Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 1.6e-166 589.3 294 100.0
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 1.1e-95 354.0 282 62.8
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 7.5e-92 341.3 281 63.3
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 8.3e-91 337.8 285 60.7
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 1.1e-90 337.4 260 65.0
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 3.5e-89 332.4 281 59.1
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 3.0e-88 329.3 282 59.2
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 5.0e-88 328.6 303 56.8
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 6.6e-88 328.2 282 59.2
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 1.5e-87 327.0 282 58.2
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 2.5e-87 326.2 288 57.6
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 3.3e-87 325.9 281 58.0
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 5.6e-87 325.1 285 57.2
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 7.3e-87 324.7 288 57.6
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 9.5e-87 324.3 289 56.1
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 2.8e-86 322.8 283 58.7
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 2.8e-86 322.8 285 57.2
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 3.6e-86 322.4 287 55.7
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 4.7e-86 322.0 278 60.4
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 4.7e-86 322.0 278 59.7
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 6.2e-86 321.6 282 58.2
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 6.2e-86 321.6 282 59.6
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 8.1e-86 321.2 285 57.5
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.1e-85 320.9 292 57.2
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 1.1e-85 320.9 278 59.4
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 2.3e-85 319.7 282 57.4
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 3.1e-85 319.3 281 58.7
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 5.2e-85 318.5 287 57.5
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 6.8e-85 318.2 288 55.6
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 8.9e-85 317.8 279 58.1
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 2.6e-84 316.2 286 56.3
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 7.5e-84 314.7 287 56.1
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 7.5e-84 314.7 282 57.8
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 1.3e-83 313.9 283 54.4
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 1.7e-83 313.5 292 55.1
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 4.9e-83 312.0 282 56.7
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 8.3e-83 311.2 283 56.5
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 8.3e-83 311.2 282 57.1
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 8.3e-83 311.2 287 54.7
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 1.9e-82 310.1 278 56.8
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 1.9e-82 310.1 278 57.2
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 3.2e-82 309.3 254 63.8
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 3.2e-82 309.3 295 54.9
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 4.1e-82 308.9 278 56.8
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 4.1e-82 308.9 312 52.6
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 7.1e-82 308.1 282 56.4
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 2.1e-81 306.6 278 56.5
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 2.7e-81 306.2 292 55.5
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 2.7e-81 306.2 291 53.3
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 3.5e-81 305.8 281 55.9
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 1.3e-80 303.9 278 56.8
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 1.3e-80 303.9 253 57.3
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 2.3e-80 303.1 265 58.5
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 5.1e-80 302.0 278 55.4
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.5e-79 300.4 282 53.5
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 2.5e-79 299.7 282 53.9
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 2.5e-79 299.7 282 53.5
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 3.3e-79 299.3 286 54.5
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 3.3e-79 299.3 288 54.9
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 4.3e-79 298.9 289 53.6
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 7.3e-79 298.1 295 52.2
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 1.2e-78 297.4 241 59.8
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 1.2e-78 297.4 224 64.3
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 2.1e-78 296.6 290 54.8
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 4.7e-78 295.4 281 53.7
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 8.1e-78 294.7 282 55.0
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 1.1e-77 294.3 225 63.1
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 1.4e-77 293.9 216 64.4
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.8e-77 293.5 272 54.8
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 3.1e-77 292.7 275 54.9
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 3.1e-77 292.7 217 65.4
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 3.1e-77 292.7 224 61.6
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 4.0e-77 292.4 288 53.1
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.6e-76 289.7 250 59.2
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 2.6e-76 289.7 258 57.4
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 4.4e-76 288.9 217 63.6
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 5.8e-76 288.5 298 51.7
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 1.3e-75 287.3 309 50.8
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 1.7e-75 287.0 253 56.5
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 4.9e-75 285.4 298 51.7
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 6.4e-75 285.0 282 53.2
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.4e-74 283.9 250 58.0
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 1.9e-74 283.5 338 47.6
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 3.2e-74 282.7 254 55.9
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 4.1e-74 282.3 280 53.2
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 2.7e-73 279.6 286 52.4
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 7.8e-73 278.1 290 50.7
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 5.1e-72 275.4 325 48.3
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 6.6e-72 275.0 229 61.1
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 6.6e-72 275.0 229 58.5
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 1.1e-71 274.2 227 58.1
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 9.6e-71 271.2 252 55.6
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.8e-70 269.6 334 46.4
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 3.6e-70 269.2 265 52.8
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 6.2e-70 268.5 222 60.4
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 3.4e-68 262.7 265 52.8
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 5.8e-68 261.9 287 50.5
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 7.6e-68 261.5 241 54.8
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 7.6e-68 261.5 241 54.8
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 2.9e-67 259.6 241 53.9
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 2.9e-67 259.6 241 53.9
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 8.4e-67 258.1 239 55.6
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.7e-65 253.1 250 54.0
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 3.5e-65 252.7 169 70.4
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 6.0e-65 251.9 257 54.1
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 8.7e-64 248.1 184 65.8
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 3.3e-63 246.1 223 57.8
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 2.7e-57 226.5 175 61.1
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 5.1e-56 222.2 166 65.7
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 2.5e-55 219.9 272 45.2
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 3.8e-51 206.1 166 57.8
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 1.1e-50 204.5 230 46.1
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 3.5e-49 199.5 236 44.1
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 3.3e-47 193.0 244 42.2
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 5.3e-45 185.7 141 61.0
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 2.0e-44 183.7 295 34.9
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 7.6e-44 181.8 251 43.0
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 1.6e-41 174.1 198 43.9
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 2.1e-41 173.7 134 62.7
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 2.0e-36 157.1 153 55.6
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 1.4e-34 151.0 107 68.2
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 1.3e-32 144.4 133 57.1
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 2.4e-29 133.7 105 61.9
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 1.9e-26 124.0 174 37.9
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 5.3e-21 105.9 92 56.5
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 2.6e-20 103.6 92 56.5
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 5.9e-20 102.4 182 32.4
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 6.5e-19 99.0 81 55.6
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 3.2e-18 96.7 70 62.9
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.0e-16 91.7 134 42.5
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 8.2e-14 82.0 122 41.0
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 1.2e-12 78.2 83 48.2
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 1.1e-10 71.6 83 42.2
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 1.2e-07 61.6 52 50.0
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 2.0e-07 60.8 45 62.2


User provided reference genes

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