Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018011 Daucus carota HOM05D001889 ORTHO05D001853 1.3e-48 196.4 126 100.0
Dinv37513 Davidia involucrata HOM05D001889 ORTHO05D001853 6.4e-16 87.8 106 66.0
Rhsim02G0246500 Rhododendron simsii HOM05D001889 ORTHO05D001853 1.2e-14 83.6 113 61.1
Lj2A163G58 Lonicera japonica HOM05D001889 ORTHO05D001853 2.1e-14 82.8 115 58.3
MD14G1131000 Malus domestica HOM05D001889 ORTHO05D001853 4.6e-14 81.6 111 45.9
HanXRQChr17g0534971 Helianthus annuus HOM05D001889 ORTHO05D001853 1.7e-13 79.7 110 50.0
MD06G1110000 Malus domestica HOM05D001889 ORTHO05D001853 1.7e-13 79.7 111 43.2
TAR375G1146 Trochodendron aralioides HOM05D001889 ORTHO05D001853 3.0e-13 79.0 106 56.6
HanXRQChr10g0313221 Helianthus annuus HOM05D001889 ORTHO05D001853 3.9e-13 78.6 109 47.7
A03p29220 Brassica napus HOM05D001889 ORTHO05D001853 8.7e-13 77.4 103 56.3
BraA03t12117Z Brassica rapa HOM05D001889 ORTHO05D001853 8.7e-13 77.4 103 56.3
CSS0033415 Camellia sinensis var. sinensis HOM05D001889 ORTHO05D001853 8.7e-13 77.4 108 56.5
HPP92_027159 Vanilla planifolia HOM05D001889 ORTHO05D001853 1.5e-12 76.6 109 52.3
C03p35280 Brassica napus HOM05D001889 ORTHO05D001853 1.9e-12 76.3 103 49.5
Eucgr.E00884 Eucalyptus grandis HOM05D001889 ORTHO05D001853 1.9e-12 76.3 106 54.7
GSVIVG01019561001 Vitis vinifera HOM05D001889 ORTHO05D001853 1.9e-12 76.3 106 42.5
Prupe.5G122900 Prunus persica HOM05D001889 ORTHO05D001853 2.5e-12 75.9 106 50.9
Actinidia22175 Actinidia chinensis HOM05D001889 ORTHO05D001853 3.3e-12 75.5 106 58.5
AT4G10920 Arabidopsis thaliana HOM05D001889 ORTHO05D001853 3.3e-12 75.5 108 42.6
Nitab4.5_0000798g0110 Nicotiana tabacum HOM05D001889 ORTHO05D001853 3.3e-12 75.5 107 55.1
Nn3g18977 Nelumbo nucifera HOM05D001889 ORTHO05D001853 4.3e-12 75.1 109 59.6
Aa31LG9G11200 Aethionema arabicum HOM05D001889 ORTHO05D001853 5.6e-12 74.7 106 52.8
FAN18G0531 Fragaria x ananassa HOM05D001889 ORTHO05D001853 5.6e-12 74.7 109 36.7
RcHm_v2.0_Chr7g0194131 Rosa chinensis HOM05D001889 ORTHO05D001853 5.6e-12 74.7 109 48.6
ClCG07G011480 Citrullus lanatus HOM05D001889 ORTHO05D001853 7.4e-12 74.3 106 40.6
Hma1.2p1_0440F.1_g153470 Hydrangea macrophylla HOM05D001889 ORTHO05D001853 7.4e-12 74.3 111 59.5
PGR042G3002 Punica granatum HOM05D001889 ORTHO05D001853 7.4e-12 74.3 112 49.1
SalBow1G7974 Salvia bowleyana HOM05D001889 ORTHO05D001853 7.4e-12 74.3 103 56.3
BcaC01g04652 Brassica carinata HOM05D001889 ORTHO05D001853 9.6e-12 73.9 103 51.5
BolC3t15839H Brassica oleracea HOM05D001889 ORTHO05D001853 9.6e-12 73.9 103 51.5
Carub.0006s2966 Capsella rubella HOM05D001889 ORTHO05D001853 9.6e-12 73.9 106 56.6
MELO3C016275.2 Cucumis melo HOM05D001889 ORTHO05D001853 9.6e-12 73.9 107 43.0
Manes.02G008100 Manihot esculenta HOM05D001889 ORTHO05D001853 9.6e-12 73.9 103 40.8
FvH4_5g04940 Fragaria vesca HOM05D001889 ORTHO05D001853 1.3e-11 73.6 109 35.8
Nitab4.5_0008496g0020 Nicotiana tabacum HOM05D001889 ORTHO05D001853 1.3e-11 73.6 107 54.2
Cfa011982 Carpinus fangiana HOM05D001889 ORTHO05D001853 1.6e-11 73.2 106 54.7
Haze_09091 Corylus avellana HOM05D001889 ORTHO05D001853 1.6e-11 73.2 106 55.7
Glyma.05G218100 Glycine max HOM05D001889 ORTHO05D001853 1.6e-11 73.2 103 61.2
Potri.001G089400 Populus trichocarpa HOM05D001889 ORTHO05D001853 1.6e-11 73.2 103 39.8
Sabra01G0065500 Salix brachista HOM05D001889 ORTHO05D001853 1.6e-11 73.2 103 39.8
TAR629G1262 Trochodendron aralioides HOM05D001889 ORTHO05D001853 1.6e-11 73.2 106 40.6
Atru.chr9.1927 Acer truncatum HOM05D001889 ORTHO05D009239 2.1e-11 72.8 103 51.5
CDE10G1213 Ceratophyllum demersum HOM05D001889 ORTHO05D001853 2.1e-11 72.8 107 46.7
BcaB01g02728 Brassica carinata HOM05D001889 ORTHO05D001853 2.8e-11 72.4 103 48.5
Glyma.08G024200 Glycine max HOM05D001889 ORTHO05D001853 2.8e-11 72.4 115 56.5
Sopen08g030830 Solanum pennellii HOM05D001889 ORTHO05D001853 2.8e-11 72.4 103 47.6
Zm00001eb361130 Zea mays HOM05D001889 ORTHO05D001853 2.8e-11 72.4 117 50.4
Sp6g06580 Schrenkiella parvula HOM05D001889 ORTHO05D001853 3.6e-11 72.0 106 50.9
Solyc08g082580.3 Solanum lycopersicum HOM05D001889 ORTHO05D001853 3.6e-11 72.0 104 49.0
vmacro11337 Vaccinium macrocarpon HOM05D001889 ORTHO05D001853 4.8e-11 71.6 96 59.4
CARHR255690 Cardamine hirsuta HOM05D001889 ORTHO05D001853 6.2e-11 71.2 108 42.6
FAN13G2042 Fragaria x ananassa HOM05D001889 ORTHO05D001853 6.2e-11 71.2 109 37.6
Lalb_Chr09g0332241 Lupinus albus HOM05D001889 ORTHO05D001853 6.2e-11 71.2 112 46.4
PGSC0003DMG400012264 Solanum tuberosum HOM05D001889 ORTHO05D001853 6.2e-11 71.2 107 43.9
Cpa.g.sc634.3 Carica papaya HOM05D001889 ORTHO05D001853 8.1e-11 70.9 106 59.4
Phvul.002G300000 Phaseolus vulgaris HOM05D001889 ORTHO05D001853 8.1e-11 70.9 109 52.3
Cc08_g16290 Coffea canephora HOM05D001889 ORTHO05D001853 1.1e-10 70.5 116 56.0
Lsat_1_v5_gn_3_11280 Lactuca sativa HOM05D001889 ORTHO05D001853 1.1e-10 70.5 108 52.8
Oeu038552.2 Olea europaea HOM05D001889 ORTHO05D001853 1.1e-10 70.5 104 53.8
CAN.G567.15 Capsicum annuum HOM05D001889 ORTHO05D001853 1.4e-10 70.1 107 52.3
Migut.A00620 Erythranthe guttata HOM05D001889 ORTHO05D001853 1.4e-10 70.1 103 54.4
unitig_748.g7694 Utricularia gibba HOM05D001889 ORTHO05D001853 1.4e-10 70.1 106 50.0
AL6G45010 Arabidopsis lyrata HOM05D001889 ORTHO05D001853 1.8e-10 69.7 106 45.3
TWI81G0658 Tripterygium wilfordii HOM05D001889 ORTHO05D001853 1.8e-10 69.7 112 47.3
arahy.Tifrunner.gnm1.ann1.VRDQ1B Arachis hypogaea HOM05D001889 ORTHO05D001853 5.3e-10 68.2 106 38.7
Thhalv10029021m.g Eutrema salsugineum HOM05D001889 ORTHO05D001853 5.3e-10 68.2 109 49.5
FAN18G4029 Fragaria x ananassa HOM05D001889 ORTHO05D001853 5.3e-10 68.2 109 37.6
PSO135G1027 Papaver somniferum HOM05D001889 ORTHO05D001853 5.3e-10 68.2 104 51.9
Peaxi162Scf00074g00634 Petunia axillaris HOM05D001889 ORTHO05D001853 6.9e-10 67.8 103 63.1
Ah.12g052720 Amaranthus hybridus HOM05D001889 ORTHO05D001853 9.0e-10 67.4 108 52.8
EL10Ac5g12940 Beta vulgaris HOM05D001889 ORTHO05D001853 9.0e-10 67.4 109 56.9
arahy.Tifrunner.gnm1.ann1.18SJMB Arachis hypogaea HOM05D001889 ORTHO05D001853 1.2e-09 67.0 106 38.7
SGA_v2.0_scaffold305G47995 Striga asiatica HOM05D001889 ORTHO05D001853 1.2e-09 67.0 103 46.6
VMungo0251G0223 Vigna mungo HOM05D001889 ORTHO05D001853 1.2e-09 67.0 112 48.2
FAN04G1520 Fragaria x ananassa HOM05D001889 ORTHO05D001853 1.5e-09 66.6 109 35.8
CiPaw.11G119000 Carya illinoinensis HOM05D001889 ORTHO05D001853 2.0e-09 66.2 106 47.2
Os01g0706000 Oryza sativa ssp. japonica HOM05D001889 ORTHO05D001853 2.0e-09 66.2 116 53.4
PSO384G4805 Papaver somniferum HOM05D001889 ORTHO05D001853 2.0e-09 66.2 113 53.1
Ca_17466_v3 Cicer arietinum L. HOM05D001889 ORTHO05D001853 3.4e-09 65.5 102 51.0
CsaV3_4G006740 Cucumis sativus L. HOM05D001889 ORTHO05D001853 3.4e-09 65.5 106 49.1
Sc22g0004890 Simmondsia chinensis HOM05D001889 ORTHO05D001853 4.5e-09 65.1 106 54.7
Aqoxy7G00073 Aquilegia oxysepala HOM05D001889 ORTHO05D001853 5.8e-09 64.7 107 49.5
Ciclev10023952m.g Citrus clementina HOM05D001889 ORTHO05D001853 5.8e-09 64.7 111 48.6
Sed0020938 Sechium edule HOM05D001889 ORTHO05D001853 5.8e-09 64.7 106 50.0
VMungo0540G2283 Vigna mungo HOM05D001889 ORTHO05D001853 5.8e-09 64.7 115 40.9
CANSAT21G0525 Cannabis sativa HOM05D001889 ORTHO05D001853 7.6e-09 64.3 106 51.9
QL02p030019 Quercus lobata HOM05D001889 ORTHO05D001853 7.6e-09 64.3 55 60.0
Psat7g024960 Pisum sativum HOM05D001889 ORTHO05D001853 9.9e-09 63.9 105 47.6
ATR0602G135 Amborella trichopoda HOM05D001889 ORTHO05D001853 1.3e-08 63.5 106 38.7
THA.LOC104806442 Tarenaya hassleriana HOM05D001889 ORTHO05D001853 2.2e-08 62.8 113 40.7
Atru.chr5.680 Acer truncatum HOM05D001889 ORTHO05D001853 2.9e-08 62.4 56 53.6
Medtr8g099650 Medicago truncatula HOM05D001889 ORTHO05D001853 2.9e-08 62.4 102 50.0
MSTRG.26916 Avicennia marina HOM05D001889 ORTHO05D001853 3.8e-08 62.0 51 62.7
Duzib068G1189 Durio zibethinus HOM05D001889 ORTHO05D001853 3.8e-08 62.0 106 41.5
Psat7g024920 Pisum sativum HOM05D001889 ORTHO05D001853 3.8e-08 62.0 105 47.6
Lj4g0003743 Lotus japonicus HOM05D001889 ORTHO05D001853 4.9e-08 61.6 103 43.7
Oeu055033.2 Olea europaea HOM05D001889 ORTHO05D001853 4.9e-08 61.6 55 52.7
CSS0024595 Camellia sinensis var. sinensis HOM05D001889 ORTHO05D001853 8.4e-08 60.8 65 49.2
Ciclev10020119m.g Citrus clementina HOM05D001889 ORTHO05D001853 1.1e-07 60.5 109 33.0
Potri.002G171900 Populus trichocarpa HOM05D001889 ORTHO05D001853 1.1e-07 60.5 64 46.9
CAN.G567.16 Capsicum annuum HOM05D001889 ORTHO05D001853 9.3e-07 57.4 104 50.0
CsaV3_3G007990 Cucumis sativus L. HOM05D001889 ORTHO05D001853 9.3e-07 57.4 106 34.0
Manes.05G022100 Manihot esculenta HOM05D001889 ORTHO05D001853 1.2e-06 57.0 106 32.1
Sabra02G0140800 Salix brachista HOM05D001889 ORTHO05D001853 1.2e-06 57.0 64 42.2
TPR.G3382 Trifolium pratense HOM05D001889 ORTHO05D001853 1.2e-06 57.0 103 44.7
ECA246G2653 Erigeron canadensis HOM05D001889 ORTHO05D001853 2.1e-06 56.2 90 48.9
RcHm_v2.0_Chr1g0359981 Rosa chinensis HOM05D001889 ORTHO05D001853 2.1e-06 56.2 54 53.7
FvH4_7g16761 Fragaria vesca HOM05D001889 ORTHO05D001853 3.5e-06 55.5 53 52.8
MELO3C006017.2 Cucumis melo HOM05D001889 ORTHO05D001853 4.6e-06 55.1 106 32.1
Gohir.D03G084300 Gossypium hirsutum HOM05D001889 ORTHO05D001853 4.6e-06 55.1 55 47.3
Gorai.003G078300 Gossypium raimondii HOM05D001889 ORTHO05D001853 4.6e-06 55.1 55 47.3
FAN10G4194 Fragaria x ananassa HOM05D001889 ORTHO05D001853 6.0e-06 54.7 51 52.9


User provided reference genes

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