Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 3.9e-97 358.2 195 100.0
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 3.9e-36 155.6 194 47.9
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 6.6e-36 154.8 189 55.0
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 1.6e-34 150.2 185 51.4
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.6e-34 150.2 195 51.3
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 1.1e-33 147.5 193 49.2
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.8e-33 146.7 196 49.0
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 3.1e-33 146.0 187 48.1
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 4.0e-33 145.6 195 48.2
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 4.0e-33 145.6 194 48.5
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 5.2e-33 145.2 196 46.4
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 5.2e-33 145.2 210 45.2
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 5.2e-33 145.2 192 47.4
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 1.2e-32 144.1 181 49.7
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 1.2e-32 144.1 187 46.5
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 1.5e-32 143.7 194 47.9
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 2.6e-32 142.9 190 49.5
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 3.4e-32 142.5 190 47.4
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 3.4e-32 142.5 185 50.3
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 1.3e-31 140.6 193 46.6
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.3e-31 140.6 191 47.6
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 2.2e-31 139.8 183 49.2
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 3.8e-31 139.0 195 47.7
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 3.8e-31 139.0 195 47.7
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 8.4e-31 137.9 187 49.2
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 1.1e-30 137.5 195 45.1
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 1.4e-30 137.1 194 47.4
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 5.4e-30 135.2 190 43.2
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 7.1e-30 134.8 198 46.0
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 7.1e-30 134.8 189 50.3
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 6.0e-29 131.7 194 47.4
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 7.8e-29 131.3 178 50.0
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 1.0e-28 131.0 187 46.0
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 1.0e-28 131.0 187 47.6
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 2.3e-28 129.8 194 45.9
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 2.3e-28 129.8 188 45.7
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 2.3e-28 129.8 187 42.8
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 5.1e-28 128.6 194 45.4
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 1.5e-27 127.1 190 47.4
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 1.5e-27 127.1 187 44.9
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 1.9e-27 126.7 185 44.9
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 4.3e-27 125.6 190 44.2
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 5.6e-27 125.2 195 43.6
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 5.6e-27 125.2 197 48.7
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 7.3e-27 124.8 187 45.5
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 1.3e-26 124.0 189 43.9
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 1.6e-26 123.6 188 43.6
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 2.8e-26 122.9 187 43.9
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 3.6e-26 122.5 187 43.9
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 3.6e-26 122.5 195 43.1
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 4.8e-26 122.1 193 44.6
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 8.1e-26 121.3 193 41.5
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 8.1e-26 121.3 190 42.1
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 4.0e-25 119.0 193 42.0
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 4.0e-25 119.0 194 41.2
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 5.3e-25 118.6 187 42.8
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 6.9e-25 118.2 167 49.1
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 9.0e-25 117.9 188 44.1
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 9.0e-25 117.9 191 44.0
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.2e-24 117.5 194 40.7
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 2.0e-24 116.7 190 44.2
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 2.6e-24 116.3 192 40.6
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 4.5e-24 115.5 186 42.5
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.7e-23 113.6 187 44.9
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.7e-23 113.6 192 42.7
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 2.2e-23 113.2 183 42.1
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 2.9e-23 112.8 186 41.9
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.9e-23 112.8 197 42.6
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 8.4e-23 111.3 191 43.5
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 8.4e-23 111.3 186 43.0
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 1.1e-22 110.9 165 45.5
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 1.4e-22 110.5 182 42.9
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 1.4e-22 110.5 188 43.6
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 1.9e-22 110.2 190 42.6
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 1.9e-22 110.2 191 44.0
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 3.2e-22 109.4 190 40.0
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 3.2e-22 109.4 190 40.0
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 3.2e-22 109.4 190 40.0
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 3.2e-22 109.4 187 41.2
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 4.2e-22 109.0 190 39.5
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 5.4e-22 108.6 166 44.6
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 7.1e-22 108.2 165 46.1
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 9.3e-22 107.8 190 42.1
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 9.3e-22 107.8 190 40.0
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 9.3e-22 107.8 190 40.0
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 9.3e-22 107.8 192 39.6
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 9.3e-22 107.8 190 39.5
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 9.3e-22 107.8 179 40.8
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 1.2e-21 107.5 189 38.6
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 2.1e-21 106.7 187 39.6
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 1.3e-20 104.0 174 42.5
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 2.3e-20 103.2 190 40.0
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 3.9e-20 102.4 190 37.4
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 3.9e-20 102.4 190 37.4
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 3.9e-20 102.4 163 45.4
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 5.1e-20 102.1 151 46.4
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 6.7e-20 101.7 191 36.6
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.1e-19 100.9 193 37.3
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 1.5e-19 100.5 190 37.4
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 1.5e-19 100.5 190 37.4
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 3.3e-19 99.4 190 39.5
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 4.3e-19 99.0 167 43.1
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 4.3e-19 99.0 191 36.6
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 9.6e-19 97.8 190 38.9
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 9.6e-19 97.8 192 35.9
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 9.6e-19 97.8 185 42.2
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 1.3e-18 97.4 192 35.9
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 1.3e-18 97.4 192 35.9
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 2.1e-18 96.7 188 38.8
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 6.2e-18 95.1 165 42.4
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 6.2e-18 95.1 194 37.1
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 6.2e-18 95.1 194 37.1
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 1.8e-17 93.6 192 36.5
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 9.0e-17 91.3 165 41.2
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 3.4e-16 89.4 197 37.1
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 2.9e-15 86.3 192 33.3
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 3.8e-15 85.9 169 37.9
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 4.9e-15 85.5 180 37.2
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 6.4e-15 85.1 169 37.3
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 8.4e-15 84.7 191 36.1
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 3.2e-14 82.8 79 54.4
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 7.1e-14 81.6 182 34.1
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 2.1e-13 80.1 191 34.0
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 2.1e-13 80.1 191 34.0
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 4.6e-13 79.0 188 35.6
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 7.9e-13 78.2 191 33.0
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 1.0e-12 77.8 191 33.0
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 1.0e-12 77.8 191 33.0
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 1.0e-12 77.8 182 36.3
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 2.5e-11 73.2 185 33.5
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 2.5e-11 73.2 94 48.9
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 9.6e-11 71.2 188 31.4
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 1.6e-10 70.5 184 32.1
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 3.7e-10 69.3 179 33.0
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 8.2e-10 68.2 189 32.8
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 8.2e-10 68.2 185 32.4
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 2.4e-09 66.6 193 31.6
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 4.0e-09 65.9 182 33.0
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 6.9e-09 65.1 80 46.2
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 6.9e-09 65.1 194 32.5
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 6.9e-09 65.1 194 32.0
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 1.2e-08 64.3 184 33.7
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 3.4e-08 62.8 44 65.9
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 2.9e-07 59.7 206 29.1
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 4.9e-07 58.9 149 34.9
unitig_37.g12687 Utricularia gibba HOM05D004507 ORTHO05D004874 1.4e-06 57.4 70 42.9
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 5.5e-06 55.5 197 28.4
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 5.5e-06 55.5 157 32.5


User provided reference genes

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