Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 1.0e-165 586.6 289 100.0
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 4.6e-118 428.3 248 88.3
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 6.4e-112 407.9 240 84.2
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 1.4e-111 406.8 240 83.8
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 2.4e-111 406.0 239 84.1
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 3.2e-111 405.6 240 83.3
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 1.2e-110 403.7 240 82.9
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 2.7e-110 402.5 240 82.5
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 3.5e-110 402.1 240 82.5
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 4.6e-110 401.7 240 82.5
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 7.9e-110 401.0 240 82.1
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 1.3e-109 400.2 240 82.5
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 1.3e-109 400.2 239 82.4
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 2.3e-109 399.4 239 82.4
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 3.0e-109 399.1 244 79.5
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 3.0e-109 399.1 241 81.3
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 3.9e-109 398.7 241 80.5
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 5.1e-109 398.3 240 82.1
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 5.1e-109 398.3 240 80.8
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 5.1e-109 398.3 240 81.2
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 5.1e-109 398.3 240 80.8
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 5.1e-109 398.3 240 81.7
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 8.7e-109 397.5 240 82.1
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 8.7e-109 397.5 240 80.8
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 1.1e-108 397.1 240 81.2
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 1.1e-108 397.1 240 80.4
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.1e-108 397.1 240 81.2
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 1.5e-108 396.7 240 81.2
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 1.5e-108 396.7 240 81.2
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 1.9e-108 396.4 240 81.7
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 2.5e-108 396.0 240 80.8
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.5e-108 396.0 240 80.8
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 2.5e-108 396.0 240 81.7
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 4.3e-108 395.2 240 80.0
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 7.4e-108 394.4 240 81.2
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 9.6e-108 394.0 240 81.2
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 9.6e-108 394.0 240 80.4
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 1.3e-107 393.7 240 80.4
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 1.3e-107 393.7 240 80.4
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 1.6e-107 393.3 240 80.8
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 1.6e-107 393.3 240 81.2
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 1.6e-107 393.3 240 80.4
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.6e-107 393.3 240 80.4
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 2.1e-107 392.9 240 80.4
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 2.1e-107 392.9 242 78.9
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 2.1e-107 392.9 242 79.8
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 2.8e-107 392.5 245 80.0
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.8e-107 392.5 240 80.4
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 2.8e-107 392.5 240 80.4
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.8e-107 392.5 240 80.4
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 3.7e-107 392.1 240 80.8
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 4.8e-107 391.7 240 80.4
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 6.2e-107 391.3 240 80.0
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 6.2e-107 391.3 240 80.0
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 8.1e-107 391.0 244 79.1
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 1.4e-106 390.2 237 80.6
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 1.4e-106 390.2 240 80.4
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.4e-106 390.2 240 80.0
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 1.8e-106 389.8 240 80.4
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 2.4e-106 389.4 240 79.6
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 2.4e-106 389.4 240 79.6
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 3.1e-106 389.0 240 80.0
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 4.0e-106 388.7 240 79.2
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 4.0e-106 388.7 240 79.2
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 4.0e-106 388.7 240 79.6
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 4.0e-106 388.7 239 79.5
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 6.9e-106 387.9 240 80.0
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 6.9e-106 387.9 240 80.0
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 6.9e-106 387.9 240 79.6
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 6.9e-106 387.9 240 78.8
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 9.0e-106 387.5 240 80.0
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.2e-105 387.1 240 80.0
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 1.2e-105 387.1 240 79.2
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 1.2e-105 387.1 243 79.0
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 1.2e-105 387.1 264 74.6
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.5e-105 386.7 240 78.8
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.5e-105 386.7 240 78.8
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 1.5e-105 386.7 240 79.2
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 2.0e-105 386.3 240 79.6
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 2.0e-105 386.3 240 79.6
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.0e-105 386.3 240 79.6
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 2.0e-105 386.3 234 81.2
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 2.0e-105 386.3 240 79.6
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 2.0e-105 386.3 240 79.6
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.6e-105 386.0 240 78.8
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 2.6e-105 386.0 240 78.8
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 4.5e-105 385.2 240 78.8
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 4.5e-105 385.2 240 78.8
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 4.5e-105 385.2 249 77.5
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.8e-105 384.8 240 79.2
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 5.8e-105 384.8 240 79.6
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 9.9e-105 384.0 240 78.3
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 1.3e-104 383.6 248 77.8
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 1.7e-104 383.3 240 79.6
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.7e-104 383.3 240 78.8
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.7e-104 383.3 240 78.3
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 2.9e-104 382.5 240 78.8
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 3.8e-104 382.1 240 78.8
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 4.9e-104 381.7 240 78.3
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 4.9e-104 381.7 240 80.0
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 8.4e-104 380.9 240 77.9
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 1.1e-103 380.6 240 77.5
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 4.2e-103 378.6 240 77.5
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 5.5e-103 378.3 239 77.8
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 5.5e-103 378.3 239 77.8
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 9.3e-103 377.5 240 77.5
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 9.3e-103 377.5 240 77.5
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 1.2e-102 377.1 240 77.1
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 1.6e-102 376.7 240 77.1
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.6e-102 376.7 240 77.9
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 2.1e-102 376.3 240 76.2
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 4.6e-102 375.2 239 77.4
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 6.0e-102 374.8 240 75.0
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 6.0e-102 374.8 238 77.7
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 6.0e-102 374.8 238 77.7
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 6.0e-102 374.8 240 77.1
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 7.9e-102 374.4 240 77.1
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 7.9e-102 374.4 240 77.1
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.8e-101 373.2 235 78.7
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 1.8e-101 373.2 240 75.4
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 1.8e-101 373.2 240 74.6
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 2.3e-101 372.9 240 77.1
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 2.3e-101 372.9 239 78.2
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 2.3e-101 372.9 240 77.1
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 3.9e-101 372.1 240 77.1
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 1.1e-100 370.5 240 77.1
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 1.1e-100 370.5 240 74.6
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 1.1e-100 370.5 240 76.7
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 1.9e-100 369.8 240 75.8
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 3.3e-100 369.0 240 76.7
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 5.6e-100 368.2 240 73.8
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 1.3e-96 357.1 255 71.8
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 2.9e-96 355.9 240 74.2
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 2.5e-95 352.8 222 77.9
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 5.5e-95 351.7 242 72.7
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 2.1e-94 349.7 240 72.9
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.8e-93 346.7 345 55.7
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 1.1e-92 344.0 240 71.7
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 1.1e-92 344.0 240 71.7
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 9.7e-92 340.9 240 67.9
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 3.7e-91 339.0 176 91.5
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 6.3e-91 338.2 176 90.9
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 2.4e-90 336.3 240 69.6
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 2.2e-88 329.7 178 88.2
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 2.2e-88 329.7 240 67.9
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.2e-87 325.9 185 85.4
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 2.1e-86 323.2 174 85.6
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.7e-86 322.8 240 70.0
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 4.6e-86 322.0 240 69.2
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.7e-83 313.5 255 65.5
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.4e-82 310.5 290 61.0
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 2.4e-82 309.7 240 67.9
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 2.1e-70 270.0 240 54.6
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 1.5e-68 263.8 140 90.0
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 5.9e-57 225.3 213 56.8
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 3.4e-52 209.5 140 72.9
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 7.2e-47 191.8 97 90.7
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 1.0e-45 188.0 142 67.6
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 1.8e-45 187.2 143 67.1
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.3e-43 181.0 135 68.9
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 3.7e-43 179.5 92 90.2
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 1.9e-39 167.2 95 86.3
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 4.3e-39 166.0 103 77.7
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 4.3e-39 166.0 96 83.3
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 2.1e-38 163.7 135 63.0
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 3.4e-36 156.4 94 81.9
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 4.3e-31 139.4 92 78.3
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 2.0e-28 130.6 81 79.0
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 3.5e-25 119.8 111 59.5
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 3.9e-24 116.3 174 42.0
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 5.1e-24 115.9 240 38.3
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 1.6e-22 110.9 100 59.0
DCAR_018299 Daucus carota HOM05D002371 ORTHO05D002397 8.9e-21 105.1 48 97.9
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 1.2e-14 84.7 81 56.8
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 8.4e-11 72.0 48 72.9
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 7.1e-10 68.9 59 57.6
DCAR_008878 Daucus carota HOM05D000053 ORTHO05D000035 1.0e-08 65.1 49 65.3
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 1.0e-08 65.1 37 75.7


User provided reference genes

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