Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_017864 Daucus carota HOM05D003561 ORTHO05D004351 3.3e-40 167.9 85 100.0
DCAR_001664 Daucus carota HOM05D003561 ORTHO05D004351 6.7e-17 90.5 46 93.5
SalBow6G0742 Salvia bowleyana HOM05D003561 ORTHO05D004351 7.4e-16 87.0 46 89.1
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 7.4e-16 87.0 46 89.1
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 9.7e-16 86.7 46 89.1
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 1.6e-15 85.9 46 87.0
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 1.6e-15 85.9 46 87.0
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 2.2e-15 85.5 46 84.8
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 2.8e-15 85.1 46 84.8
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 2.8e-15 85.1 46 84.8
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 2.8e-15 85.1 46 84.8
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 2.8e-15 85.1 46 84.8
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 3.7e-15 84.7 46 87.0
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 3.7e-15 84.7 46 84.8
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 3.7e-15 84.7 46 87.0
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 4.8e-15 84.3 46 84.8
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 4.8e-15 84.3 46 84.8
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 6.3e-15 84.0 46 84.8
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 6.3e-15 84.0 46 84.8
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 6.3e-15 84.0 46 84.8
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 6.3e-15 84.0 46 84.8
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 6.3e-15 84.0 51 76.5
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 6.3e-15 84.0 46 84.8
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 8.2e-15 83.6 46 82.6
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 8.2e-15 83.6 46 82.6
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 8.2e-15 83.6 46 84.8
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 8.2e-15 83.6 46 84.8
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 8.2e-15 83.6 46 84.8
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 8.2e-15 83.6 46 84.8
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 8.2e-15 83.6 46 84.8
CSS0037584 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.1e-14 83.2 45 86.7
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 1.1e-14 83.2 46 84.8
RcHm_v2.0_Chr6g0254291 Rosa chinensis HOM05D003561 ORTHO05D004351 1.1e-14 83.2 45 86.7
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 1.4e-14 82.8 51 76.5
Lj5A216G104 Lonicera japonica HOM05D003561 ORTHO05D004351 1.4e-14 82.8 70 62.9
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 1.4e-14 82.8 46 82.6
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 1.4e-14 82.8 46 82.6
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 1.8e-14 82.4 46 82.6
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 1.8e-14 82.4 46 82.6
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 1.8e-14 82.4 46 82.6
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 2.4e-14 82.0 46 80.4
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 2.4e-14 82.0 46 80.4
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 2.4e-14 82.0 46 80.4
Haze_10212 Corylus avellana HOM05D003561 ORTHO05D004351 2.4e-14 82.0 45 84.4
FAN20G0240 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.4e-14 82.0 46 82.6
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 3.1e-14 81.6 46 82.6
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 4.1e-14 81.3 46 78.3
Cpa.g.sc292.9 Carica papaya HOM05D003561 ORTHO05D004351 5.3e-14 80.9 46 78.3
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 5.3e-14 80.9 46 82.6
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 5.3e-14 80.9 46 80.4
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 5.3e-14 80.9 46 80.4
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 5.3e-14 80.9 46 80.4
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 6.9e-14 80.5 46 78.3
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 9.0e-14 80.1 46 80.4
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 9.0e-14 80.1 46 80.4
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 9.0e-14 80.1 46 80.4
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 1.5e-13 79.3 46 80.4
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 1.5e-13 79.3 45 84.4
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 1.5e-13 79.3 46 78.3
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 1.5e-13 79.3 45 80.0
RcHm_v2.0_Chr6g0254371 Rosa chinensis HOM05D003561 ORTHO05D004351 1.5e-13 79.3 46 82.6
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 2.0e-13 79.0 51 72.5
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 2.0e-13 79.0 46 78.3
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 3.4e-13 78.2 46 78.3
Rhsim05G0089000 Rhododendron simsii HOM05D003561 ORTHO05D000355 3.4e-13 78.2 46 76.1
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 3.4e-13 78.2 46 73.9
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 3.4e-13 78.2 46 78.3
Manes.13G115200 Manihot esculenta HOM05D003561 ORTHO05D004351 4.5e-13 77.8 71 56.3
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 5.9e-13 77.4 46 71.7
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 5.9e-13 77.4 46 71.7
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 7.7e-13 77.0 46 78.3
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 1.0e-12 76.6 46 78.3
Ah.09g232050 Amaranthus hybridus HOM05D003561 ORTHO05D004351 1.3e-12 76.3 46 73.9
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 1.3e-12 76.3 51 68.6
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.3e-12 76.3 46 73.9
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.3e-12 76.3 46 73.9
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 1.3e-12 76.3 46 73.9
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.7e-12 75.9 45 75.6
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 1.7e-12 75.9 46 73.9
vmacro19460 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 2.2e-12 75.5 46 76.1
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 3.8e-12 74.7 72 51.4
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 3.8e-12 74.7 46 69.6
vmacro05379 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 5.0e-12 74.3 52 63.5
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 6.5e-12 73.9 46 71.7
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 8.5e-12 73.6 51 64.7
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 8.5e-12 73.6 46 71.7
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.1e-11 73.2 63 57.1
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 1.4e-11 72.8 46 71.7
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 1.4e-11 72.8 46 73.9
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 1.9e-11 72.4 46 71.7
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 1.9e-11 72.4 46 76.1
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 2.5e-11 72.0 46 67.4
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 2.5e-11 72.0 46 67.4
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 3.2e-11 71.6 51 60.8
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 3.2e-11 71.6 46 71.7
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 3.2e-11 71.6 46 71.7
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 3.2e-11 71.6 46 67.4
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 3.2e-11 71.6 46 67.4
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 4.2e-11 71.2 46 71.7
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 4.2e-11 71.2 46 71.7
Atru.chr3.215 Acer truncatum HOM05D003561 ORTHO05D004351 5.5e-11 70.9 51 64.7
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 5.5e-11 70.9 51 64.7
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 5.5e-11 70.9 52 67.3
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 5.5e-11 70.9 52 63.5
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 7.2e-11 70.5 46 67.4
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 7.2e-11 70.5 46 67.4
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 9.4e-11 70.1 46 69.6
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 9.4e-11 70.1 84 46.4
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 9.4e-11 70.1 46 63.0
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 9.4e-11 70.1 51 62.7
AagrBONN_evm.TU.Sc2ySwM_111.1 Anthoceros agrestis HOM05D003561 ORTHO05D004351 1.2e-10 69.7 78 48.7
AagrBONN_evm.TU.Sc2ySwM_340.381 Anthoceros agrestis HOM05D003561 ORTHO05D004351 1.2e-10 69.7 78 48.7
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 1.2e-10 69.7 46 69.6
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 1.6e-10 69.3 46 67.4
Duzib147G0573 Durio zibethinus HOM05D003561 ORTHO05D004351 1.6e-10 69.3 51 60.8
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 1.6e-10 69.3 51 62.7
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.6e-10 69.3 51 62.7
FAN26G2049 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.6e-10 69.3 51 62.7
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 2.1e-10 68.9 46 65.2
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 2.1e-10 68.9 46 65.2
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 2.1e-10 68.9 44 72.7
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 2.7e-10 68.6 40 80.0
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 2.7e-10 68.6 46 67.4
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 3.6e-10 68.2 46 65.2
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 3.6e-10 68.2 46 65.2
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 3.6e-10 68.2 46 65.2
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 3.6e-10 68.2 46 65.2
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 3.6e-10 68.2 46 63.0
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 4.6e-10 67.8 63 52.4
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 4.6e-10 67.8 63 52.4
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 1.0e-09 66.6 46 65.2
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 1.0e-09 66.6 51 62.7
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.4e-09 66.2 46 63.0
BcaNung04160 Brassica carinata HOM05D003561 ORTHO05D004351 1.8e-09 65.9 46 65.2
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 1.8e-09 65.9 51 54.9
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 1.8e-09 65.9 51 54.9
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 1.8e-09 65.9 46 63.0
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 2.3e-09 65.5 46 60.9
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 2.3e-09 65.5 46 60.9
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 5.1e-09 64.3 46 58.7
PGSC0003DMG400013016 Solanum tuberosum HOM05D003561 ORTHO05D004351 1.1e-08 63.2 46 60.9
SGA_v2.0_scaffold143G35782 Striga asiatica HOM05D003561 ORTHO05D004351 1.5e-08 62.8 51 54.9
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 1.9e-08 62.4 46 65.2
Peaxi162Scf00449g00016 Petunia axillaris HOM05D003561 ORTHO05D004351 1.9e-08 62.4 46 58.7
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 3.3e-08 61.6 65 47.7
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 3.3e-08 61.6 65 47.7
CAN.G1482.2 Capsicum annuum HOM05D003561 ORTHO05D004351 4.3e-08 61.2 46 58.7
Nitab4.5_0000604g0020 Nicotiana tabacum HOM05D003561 ORTHO05D004351 5.7e-08 60.8 46 58.7
Solyc02g064800.3 Solanum lycopersicum HOM05D003561 ORTHO05D004351 5.7e-08 60.8 46 58.7
Sopen02g014910 Solanum pennellii HOM05D003561 ORTHO05D004351 5.7e-08 60.8 46 58.7
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 2.2e-07 58.9 69 40.6
Nitab4.5_0000284g0010 Nicotiana tabacum HOM05D003561 ORTHO05D004351 8.2e-07 57.0 46 54.3
SalBow1G5992 Salvia bowleyana HOM05D003561 ORTHO05D004351 2.4e-06 55.5 52 53.8
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 9.1e-06 53.5 46 47.8


User provided reference genes

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