Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_017824 Daucus carota HOM05D000536 ORTHO05D001213 1.1e-86 323.6 195 100.0
DCAR_017825 Daucus carota HOM05D000536 ORTHO05D001213 1.1e-86 323.6 195 100.0
Lj7A631G23 Lonicera japonica HOM05D000536 ORTHO05D001213 1.4e-22 110.5 179 45.3
HanXRQChr06g0180261 Helianthus annuus HOM05D000536 ORTHO05D001213 1.0e-20 104.4 170 40.0
Cc06_g08740 Coffea canephora HOM05D000536 ORTHO05D001213 6.7e-20 101.7 171 40.4
ECA240G2050 Erigeron canadensis HOM05D000536 ORTHO05D001213 1.3e-18 97.4 181 38.1
Lsat_1_v5_gn_8_58960 Lactuca sativa HOM05D000536 ORTHO05D001213 1.3e-18 97.4 176 40.3
Dinv36543 Davidia involucrata HOM05D000536 ORTHO05D001213 4.8e-18 95.5 178 43.3
Nitab4.5_0007260g0010 Nicotiana tabacum HOM05D000536 ORTHO05D001213 4.8e-18 95.5 166 50.6
Peaxi162Scf00984g00117 Petunia axillaris HOM05D000536 ORTHO05D001213 1.1e-17 94.4 173 48.0
CSS0018342 Camellia sinensis var. sinensis HOM05D000536 ORTHO05D001213 1.5e-16 90.5 167 55.1
Rhsim01G0076300 Rhododendron simsii HOM05D000536 ORTHO05D001213 1.5e-16 90.5 176 36.9
Nitab4.5_0003558g0010 Nicotiana tabacum HOM05D000536 ORTHO05D001213 2.0e-16 90.1 174 48.9
CSS0043910 Camellia sinensis var. sinensis HOM05D000536 ORTHO05D001213 2.6e-16 89.7 166 53.0
Migut.K00474 Erythranthe guttata HOM05D000536 ORTHO05D001213 4.5e-16 89.0 172 38.4
Rhsim01G0076200 Rhododendron simsii HOM05D000536 ORTHO05D001213 5.8e-16 88.6 173 37.0
PGSC0003DMG400020679 Solanum tuberosum HOM05D000536 ORTHO05D001213 2.2e-15 86.7 184 35.9
Oeu034111.1 Olea europaea HOM05D000536 ORTHO05D001213 3.8e-15 85.9 153 52.9
vmacro20599 Vaccinium macrocarpon HOM05D000536 ORTHO05D001213 3.8e-15 85.9 172 40.1
FvH4_1g03560 Fragaria vesca HOM05D000536 ORTHO05D001213 4.9e-15 85.5 178 37.1
FAN19G2088 Fragaria x ananassa HOM05D000536 ORTHO05D001213 4.9e-15 85.5 176 35.2
FAN26G0898 Fragaria x ananassa HOM05D000536 ORTHO05D001213 4.9e-15 85.5 178 37.1
FAN28G0052 Fragaria x ananassa HOM05D000536 ORTHO05D001213 4.9e-15 85.5 178 37.1
CiPaw.03G242400 Carya illinoinensis HOM05D000536 ORTHO05D001213 6.4e-15 85.1 174 39.7
Cfa003351 Carpinus fangiana HOM05D000536 ORTHO05D001213 8.4e-15 84.7 170 37.1
Solyc12g006630.2 Solanum lycopersicum HOM05D000536 ORTHO05D001213 8.4e-15 84.7 178 35.4
FAN23G0966 Fragaria x ananassa HOM05D000536 ORTHO05D001213 1.1e-14 84.3 178 36.5
Sopen12g002580 Solanum pennellii HOM05D000536 ORTHO05D001213 1.4e-14 84.0 178 34.8
RcHm_v2.0_Chr2g0089081 Rosa chinensis HOM05D000536 ORTHO05D001213 3.2e-14 82.8 172 34.9
Lsat_1_v5_gn_7_45721 Lactuca sativa HOM05D000536 ORTHO05D001213 4.2e-14 82.4 190 35.8
Hma1.2p1_0018F.1_g012620 Hydrangea macrophylla HOM05D000536 ORTHO05D001213 5.5e-14 82.0 55 67.3
QL02p087871 Quercus lobata HOM05D000536 ORTHO05D001213 7.1e-14 81.6 177 34.5
TWI34G0627 Tripterygium wilfordii HOM05D000536 ORTHO05D001213 9.3e-14 81.3 172 34.9
HanXRQChr09g0242341 Helianthus annuus HOM05D000536 ORTHO05D001213 4.6e-13 79.0 202 38.6
TAR383G0639 Trochodendron aralioides HOM05D000536 ORTHO05D001213 4.6e-13 79.0 169 36.7
GSVIVG01015506001 Vitis vinifera HOM05D000536 ORTHO05D001213 1.3e-12 77.4 54 63.0
CAN.G377.8 Capsicum annuum HOM05D000536 ORTHO05D001213 1.8e-12 77.0 55 61.8
Duzib150G1540 Durio zibethinus HOM05D000536 ORTHO05D001213 2.3e-12 76.6 177 33.9
HanXRQChr03g0062531 Helianthus annuus HOM05D000536 ORTHO05D001213 2.3e-12 76.6 180 37.2
COL.COLO4_05775 Corchorus olitorius HOM05D000536 ORTHO05D001213 3.0e-12 76.3 51 62.7
Duzib168G1357 Durio zibethinus HOM05D000536 ORTHO05D001213 3.0e-12 76.3 188 31.9
Hma1.2p1_0665F.1_g199100 Hydrangea macrophylla HOM05D000536 ORTHO05D001213 3.0e-12 76.3 54 63.0
Thecc.09G123600 Theobroma cacao HOM05D000536 ORTHO05D001213 3.9e-12 75.9 54 61.1
TAR626G0923 Trochodendron aralioides HOM05D000536 ORTHO05D001213 3.9e-12 75.9 54 63.0
ATR1156G077 Amborella trichopoda HOM05D000536 ORTHO05D001213 5.1e-12 75.5 55 61.8
CSS0008171 Camellia sinensis var. sinensis HOM05D000536 ORTHO05D001213 6.7e-12 75.1 178 36.0
PGR102G3259 Punica granatum HOM05D000536 ORTHO05D001213 6.7e-12 75.1 173 35.8
Atru.chr7.1210 Acer truncatum HOM05D000536 ORTHO05D001213 8.7e-12 74.7 171 35.7
Eucgr.C04183 Eucalyptus grandis HOM05D000536 ORTHO05D001213 8.7e-12 74.7 54 59.3
TAR625G1232 Trochodendron aralioides HOM05D000536 ORTHO05D001213 1.1e-11 74.3 54 59.3
CANSAT11G2354 Cannabis sativa HOM05D000536 ORTHO05D001213 3.3e-11 72.8 54 57.4
THA.LOC104815103 Tarenaya hassleriana HOM05D000536 ORTHO05D001213 3.3e-11 72.8 117 38.5
Gohir.D05G018400 Gossypium hirsutum HOM05D000536 ORTHO05D001213 4.3e-11 72.4 54 57.4
Gorai.009G018800 Gossypium raimondii HOM05D000536 ORTHO05D001213 4.3e-11 72.4 54 57.4
Manes.14G130800 Manihot esculenta HOM05D000536 ORTHO05D001213 5.6e-11 72.0 54 61.1
Gohir.A05G017500 Gossypium hirsutum HOM05D000536 ORTHO05D001213 7.4e-11 71.6 54 57.4
MD02G1034900 Malus domestica HOM05D000536 ORTHO05D001213 7.4e-11 71.6 174 34.5
Aqoxy7G02114 Aquilegia oxysepala HOM05D000536 ORTHO05D001213 9.6e-11 71.2 144 32.6
MD00G1106900 Malus domestica HOM05D000536 ORTHO05D001213 9.6e-11 71.2 54 57.4
Prupe.7G240100 Prunus persica HOM05D000536 ORTHO05D001213 9.6e-11 71.2 54 59.3
SalBow1G6056 Salvia bowleyana HOM05D000536 ORTHO05D001213 9.6e-11 71.2 168 32.7
Nn2g11972 Nelumbo nucifera HOM05D000536 ORTHO05D001213 1.3e-10 70.9 58 58.6
PSO170G1145 Papaver somniferum HOM05D000536 ORTHO05D001213 1.3e-10 70.9 50 62.0
PSO455G0146 Papaver somniferum HOM05D000536 ORTHO05D001213 1.3e-10 70.9 50 62.0
Hund26491 Selenicereus undatus HOM05D000536 ORTHO05D001213 1.3e-10 70.9 53 62.3
Glyma.13G168300 Glycine max HOM05D000536 ORTHO05D001213 1.6e-10 70.5 51 58.8
Nn8g39397 Nelumbo nucifera HOM05D000536 ORTHO05D001213 1.6e-10 70.5 54 57.4
MBI04_g07633_MAGBIO Magnolia biondii HOM05D000536 ORTHO05D001213 2.1e-10 70.1 54 57.4
Sc18g0000670 Simmondsia chinensis HOM05D000536 ORTHO05D001213 2.8e-10 69.7 200 32.0
Lalb_Chr12g0197831 Lupinus albus HOM05D000536 ORTHO05D001213 3.7e-10 69.3 46 65.2
Medtr4g114060 Medicago truncatula HOM05D000536 ORTHO05D001213 4.8e-10 68.9 46 65.2
Cpa.g.sc75.54 Carica papaya HOM05D000536 ORTHO05D001213 6.2e-10 68.6 54 57.4
Ciclev10009401m.g Citrus clementina HOM05D000536 ORTHO05D001213 6.2e-10 68.6 54 55.6
Haze_25610 Corylus avellana HOM05D000536 ORTHO05D001213 6.2e-10 68.6 164 34.8
Glyma.17G116000 Glycine max HOM05D000536 ORTHO05D001213 6.2e-10 68.6 201 31.3
Lj4g0020082 Lotus japonicus HOM05D000536 ORTHO05D001213 8.2e-10 68.2 51 56.9
Sed0016505 Sechium edule HOM05D000536 ORTHO05D001213 1.8e-09 67.0 54 53.7
Psat4g040840 Pisum sativum HOM05D000536 ORTHO05D001213 2.4e-09 66.6 46 63.0
Sed0020428 Sechium edule HOM05D000536 ORTHO05D001213 2.4e-09 66.6 54 53.7
arahy.Tifrunner.gnm1.ann1.VNPM5I Arachis hypogaea HOM05D000536 ORTHO05D001213 3.1e-09 66.2 53 52.8
arahy.Tifrunner.gnm1.ann1.62CDNH Arachis hypogaea HOM05D000536 ORTHO05D001213 4.0e-09 65.9 53 52.8
Lalb_Chr07g0178841 Lupinus albus HOM05D000536 ORTHO05D001213 4.0e-09 65.9 202 33.7
EL10Ac8g18621 Beta vulgaris HOM05D000536 ORTHO05D001213 5.3e-09 65.5 46 60.9
AT5G20110 Arabidopsis thaliana HOM05D000536 ORTHO05D001213 6.9e-09 65.1 56 51.8
AL6G31660 Arabidopsis lyrata HOM05D000536 ORTHO05D001213 1.5e-08 63.9 53 52.8
Carub.0006s1849 Capsella rubella HOM05D000536 ORTHO05D001213 3.4e-08 62.8 56 50.0
CARHR192720 Cardamine hirsuta HOM05D000536 ORTHO05D001213 3.4e-08 62.8 53 52.8
TPR.G10718 Trifolium pratense HOM05D000536 ORTHO05D001213 3.4e-08 62.8 214 29.4
Thhalv10014655m.g Eutrema salsugineum HOM05D000536 ORTHO05D001213 4.5e-08 62.4 56 50.0
AUR62033482 Chenopodium quinoa HOM05D000536 ORTHO05D001213 5.8e-08 62.0 46 58.7
Aa31sc461G10 Aethionema arabicum HOM05D000536 ORTHO05D001213 7.6e-08 61.6 53 52.8
BcaC03g13731 Brassica carinata HOM05D003058 ORTHO05D003464 7.6e-08 61.6 77 40.3
Zm00001eb342300 Zea mays HOM05D000536 ORTHO05D001213 7.6e-08 61.6 55 47.3
BcaB01g04803 Brassica carinata HOM05D000536 ORTHO05D001213 1.0e-07 61.2 53 50.9
A03p09830 Brassica napus HOM05D000536 ORTHO05D001213 1.0e-07 61.2 53 50.9
BNapus_Darmor_BZH_scaffold_38p01800 Brassica napus HOM05D000536 ORTHO05D001213 1.0e-07 61.2 53 50.9
BolC2t07014H Brassica oleracea HOM05D000536 ORTHO05D001213 1.0e-07 61.2 53 50.9
BolC3t13615H Brassica oleracea HOM05D000536 ORTHO05D001213 1.0e-07 61.2 53 50.9
BraA02t05555Z Brassica rapa HOM05D000536 ORTHO05D001213 1.0e-07 61.2 53 50.9
BraA03t10298Z Brassica rapa HOM05D000536 ORTHO05D001213 1.0e-07 61.2 189 29.6
AUR62011093 Chenopodium quinoa HOM05D000536 ORTHO05D001213 1.0e-07 61.2 53 56.6
ClCG11G002920 Citrullus lanatus HOM05D000536 ORTHO05D001213 1.0e-07 61.2 54 50.0
MELO3C004518.2 Cucumis melo HOM05D000536 ORTHO05D001213 1.0e-07 61.2 54 50.0
CsaV3_2G002750 Cucumis sativus L. HOM05D000536 ORTHO05D001213 1.0e-07 61.2 54 50.0
Sp6g24300 Schrenkiella parvula HOM05D000536 ORTHO05D001213 1.0e-07 61.2 53 50.9
C03p11410 Brassica napus HOM05D000536 ORTHO05D001213 1.3e-07 60.8 189 28.6
Sabra15G0092700 Salix brachista HOM05D000536 ORTHO05D001213 2.2e-07 60.1 44 56.8
Ciclev10021550m.g Citrus clementina HOM05D000536 ORTHO05D001213 2.9e-07 59.7 58 51.7
GSVIVG01008092001 Vitis vinifera HOM05D000536 ORTHO05D001213 2.9e-07 59.7 53 54.7
A02p06040 Brassica napus HOM05D000536 ORTHO05D001213 6.5e-07 58.5 46 54.3
Potri.015G067800 Populus trichocarpa HOM05D000536 ORTHO05D001213 6.5e-07 58.5 44 56.8
SGA_v2.0_scaffold56G20077 Striga asiatica HOM05D000536 ORTHO05D001213 8.4e-07 58.2 53 52.8
CSS0038761 Camellia sinensis var. sinensis HOM05D000536 ORTHO05D001213 1.1e-06 57.8 43 60.5
Duzib084G0493 Durio zibethinus HOM05D000536 ORTHO05D001213 1.1e-06 57.8 58 48.3
Hma1.2p1_1617F.1_g293790 Hydrangea macrophylla HOM05D000536 ORTHO05D001213 1.1e-06 57.8 43 62.8
Manes.02G197600 Manihot esculenta HOM05D000536 ORTHO05D001213 1.4e-06 57.4 154 29.9
MSTRG.11412 Avicennia marina HOM05D000536 ORTHO05D001213 1.9e-06 57.0 53 50.9
Duzib205G1168 Durio zibethinus HOM05D000536 ORTHO05D001213 1.9e-06 57.0 58 48.3
ECA232G3014 Erigeron canadensis HOM05D000536 ORTHO05D001213 1.9e-06 57.0 53 54.7
Thecc.K0000600 Theobroma cacao HOM05D000536 ORTHO05D001213 1.9e-06 57.0 58 48.3
vmacro16577 Vaccinium macrocarpon HOM05D000536 ORTHO05D001213 1.9e-06 57.0 53 52.8
Dinv41528 Davidia involucrata HOM05D000536 ORTHO05D029247 2.5e-06 56.6 33 75.8
TWI60G1120 Tripterygium wilfordii HOM05D000536 ORTHO05D001213 2.5e-06 56.6 58 51.7
MSTRG.23068 Avicennia marina HOM05D000536 ORTHO05D001213 3.2e-06 56.2 43 55.8
CAN.G628.56 Capsicum annuum HOM05D000536 ORTHO05D001213 3.2e-06 56.2 43 55.8
COL.COLO4_21257 Corchorus olitorius HOM05D000536 ORTHO05D001213 3.2e-06 56.2 43 55.8
MD14G1190400 Malus domestica HOM05D000536 ORTHO05D001213 3.2e-06 56.2 43 55.8
Peaxi162Scf00689g00547 Petunia axillaris HOM05D000536 ORTHO05D001213 3.2e-06 56.2 43 55.8
FvH4_5g15920 Fragaria vesca HOM05D000536 ORTHO05D001213 4.2e-06 55.8 43 58.1
FAN04G2468 Fragaria x ananassa HOM05D000536 ORTHO05D001213 4.2e-06 55.8 43 58.1
FAN08G1897 Fragaria x ananassa HOM05D000536 ORTHO05D001213 4.2e-06 55.8 43 58.1
MD06G1184500 Malus domestica HOM05D000536 ORTHO05D001213 4.2e-06 55.8 43 53.5
RcHm_v2.0_Chr7g0180131 Rosa chinensis HOM05D000536 ORTHO05D001213 4.2e-06 55.8 43 58.1
SalBow5G0983 Salvia bowleyana HOM05D000536 ORTHO05D001213 4.2e-06 55.8 53 50.9
Solyc06g071180.3 Solanum lycopersicum HOM05D000536 ORTHO05D001213 4.2e-06 55.8 43 58.1
CiPaw.11G034900 Carya illinoinensis HOM05D000536 ORTHO05D001213 5.5e-06 55.5 58 46.6
CDE04G2147 Ceratophyllum demersum HOM05D001564 ORTHO05D001439 5.5e-06 55.5 61 41.0
Migut.I00101 Erythranthe guttata HOM05D000536 ORTHO05D001213 5.5e-06 55.5 53 49.1
Sopen06g027490 Solanum pennellii HOM05D000536 ORTHO05D001213 5.5e-06 55.5 43 55.8
Ca_21866_v3 Cicer arietinum L. HOM05D000536 ORTHO05D001213 7.1e-06 55.1 44 52.3
Medtr4g107350 Medicago truncatula HOM05D000536 ORTHO05D001213 7.1e-06 55.1 44 52.3
Nn4g22985 Nelumbo nucifera HOM05D000536 ORTHO05D001213 7.1e-06 55.1 53 52.8
Os01g0555600 Oryza sativa ssp. japonica HOM05D000536 ORTHO05D001213 7.1e-06 55.1 46 50.0
Rhsim12G0160400 Rhododendron simsii HOM05D000536 ORTHO05D001213 7.1e-06 55.1 43 55.8
TPR.G38458 Trifolium pratense HOM05D000536 ORTHO05D001213 7.1e-06 55.1 44 52.3
TAR371G0401 Trochodendron aralioides HOM05D000536 ORTHO05D001213 7.1e-06 55.1 41 53.7
Cc04_g16020 Coffea canephora HOM05D000536 ORTHO05D001213 9.3e-06 54.7 43 55.8
Duzib068G1309 Durio zibethinus HOM05D000536 ORTHO05D001213 9.3e-06 54.7 40 57.5
Sc12g0005930 Simmondsia chinensis HOM05D000536 ORTHO05D001213 9.3e-06 54.7 44 54.5


User provided reference genes

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