Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_017499 Daucus carota HOM05D007073 ORTHO05D008855 2.4e-75 285.4 146 100.0
CSS0049768 Camellia sinensis var. sinensis HOM05D007073 ORTHO05D008855 1.5e-21 106.7 64 84.4
TWI56G0686 Tripterygium wilfordii HOM05D007073 ORTHO05D008855 4.5e-21 105.1 67 82.1
Atru.chr13.338 Acer truncatum HOM05D007073 ORTHO05D008855 7.7e-21 104.4 64 84.4
Dinv31819 Davidia involucrata HOM05D007073 ORTHO05D008855 7.7e-21 104.4 64 85.9
TAR628G0116 Trochodendron aralioides HOM05D007073 ORTHO05D008855 1.0e-20 104.0 64 84.4
RhsimUnG0148500 Rhododendron simsii HOM05D007073 ORTHO05D008855 1.3e-20 103.6 64 82.8
unitig_32.g11146 Utricularia gibba HOM05D007073 ORTHO05D008855 2.2e-20 102.8 62 83.9
RcHm_v2.0_Chr6g0272121 Rosa chinensis HOM05D007073 ORTHO05D008855 6.5e-20 101.3 64 82.8
GSVIVG01009840001 Vitis vinifera HOM05D007073 ORTHO05D008855 6.5e-20 101.3 64 81.2
Eucgr.H01040 Eucalyptus grandis HOM05D007073 ORTHO05D008855 8.5e-20 100.9 64 79.7
Eucgr.L01253 Eucalyptus grandis HOM05D007073 ORTHO05D008855 8.5e-20 100.9 64 79.7
QL02p010904 Quercus lobata HOM05D007073 ORTHO05D008855 8.5e-20 100.9 63 79.4
FvH4_5g30190 Fragaria vesca HOM05D007073 ORTHO05D008855 1.1e-19 100.5 64 81.2
Eucgr.H01037 Eucalyptus grandis HOM05D007073 ORTHO05D008855 1.9e-19 99.8 64 78.1
COL.COLO4_26179 Corchorus olitorius HOM05D007073 ORTHO05D008855 2.5e-19 99.4 64 78.1
Hma1.2p1_0773F.1_g216240 Hydrangea macrophylla HOM05D007073 ORTHO05D008855 2.5e-19 99.4 64 81.2
Medtr8g085700 Medicago truncatula HOM05D007073 ORTHO05D008855 2.5e-19 99.4 64 79.7
Sed0011824 Sechium edule HOM05D007073 ORTHO05D008855 2.5e-19 99.4 64 81.2
Duzib093G1738 Durio zibethinus HOM05D007073 ORTHO05D008855 3.2e-19 99.0 64 78.1
HanXRQChr02g0044001 Helianthus annuus HOM05D007073 ORTHO05D008855 3.2e-19 99.0 64 81.2
CANSAT25G0010 Cannabis sativa HOM05D007073 ORTHO05D008855 4.2e-19 98.6 58 87.9
Haze_22602 Corylus avellana HOM05D000624 ORTHO05D000495 4.2e-19 98.6 59 86.4
Migut.C00802 Erythranthe guttata HOM05D007073 ORTHO05D008855 4.2e-19 98.6 64 76.6
CsaV3_2G029360 Cucumis sativus L. HOM05D007073 ORTHO05D008855 5.5e-19 98.2 64 79.7
SGA_v2.0_scaffold92G28274 Striga asiatica HOM05D007073 ORTHO05D008855 5.5e-19 98.2 64 75.0
ClCG08G014440 Citrullus lanatus HOM05D007073 ORTHO05D008855 7.2e-19 97.8 64 79.7
Oeu054729.1 Olea europaea HOM05D007073 ORTHO05D008855 7.2e-19 97.8 61 80.3
Zm00001eb001980 Zea mays HOM05D007073 ORTHO05D008855 7.2e-19 97.8 64 78.1
AUR62019145 Chenopodium quinoa HOM05D007073 ORTHO05D008855 9.4e-19 97.4 64 79.7
Cc02_g29940 Coffea canephora HOM05D007073 ORTHO05D008855 9.4e-19 97.4 64 76.6
SGA_v2.0_scaffold92G28275 Striga asiatica HOM05D007073 ORTHO05D008855 9.4e-19 97.4 61 77.0
Psat7g072280 Pisum sativum HOM05D007073 ORTHO05D008855 1.2e-18 97.1 64 75.0
Solyc04g081160.3 Solanum lycopersicum HOM05D007073 ORTHO05D008855 1.2e-18 97.1 64 78.1
Sopen04g034780 Solanum pennellii HOM05D007073 ORTHO05D008855 1.2e-18 97.1 64 78.1
PGSC0003DMG400003718 Solanum tuberosum HOM05D007073 ORTHO05D008855 1.2e-18 97.1 64 78.1
Cc04_g14740 Coffea canephora HOM05D007073 ORTHO05D008855 1.6e-18 96.7 64 76.6
Potri.005G235800 Populus trichocarpa HOM05D007073 ORTHO05D008855 1.6e-18 96.7 63 77.8
Sabra05G0182000 Salix brachista HOM05D007073 ORTHO05D008855 1.6e-18 96.7 63 77.8
THA.LOC104810648 Tarenaya hassleriana HOM05D007073 ORTHO05D008855 1.6e-18 96.7 64 76.6
TPR.G24371 Trifolium pratense HOM05D007073 ORTHO05D008855 1.6e-18 96.7 64 75.0
vmacro21707 Vaccinium macrocarpon HOM05D007073 ORTHO05D008855 1.6e-18 96.7 64 78.1
MD08G1016500 Malus domestica HOM05D007073 ORTHO05D008855 2.1e-18 96.3 64 79.7
Nn5g29254 Nelumbo nucifera HOM05D007073 ORTHO05D008855 2.1e-18 96.3 64 78.1
Glyma.08G113800 Glycine max HOM05D007073 ORTHO05D008855 2.7e-18 95.9 64 75.0
PSO541G6379 Papaver somniferum HOM05D007073 ORTHO05D008855 2.7e-18 95.9 64 76.6
PSO675G5408 Papaver somniferum HOM05D007073 ORTHO05D008855 2.7e-18 95.9 64 76.6
PGR031G0624 Punica granatum HOM05D007073 ORTHO05D008855 2.7e-18 95.9 64 78.1
EL10Ac1g00450 Beta vulgaris HOM05D007073 ORTHO05D008855 3.6e-18 95.5 64 76.6
Lsat_1_v5_gn_1_16141 Lactuca sativa HOM05D007073 ORTHO05D008855 3.6e-18 95.5 64 78.1
Peaxi162Scf00287g01620 Petunia axillaris HOM05D007073 ORTHO05D008855 3.6e-18 95.5 64 75.0
Carub.0001s2918 Capsella rubella HOM05D007073 ORTHO05D008855 8.0e-18 94.4 64 75.0
CAN.G1271.5 Capsicum annuum HOM05D007073 ORTHO05D008855 8.0e-18 94.4 64 76.6
Lj4g0003370 Lotus japonicus HOM05D007073 ORTHO05D008855 8.0e-18 94.4 64 73.4
Manes.18G016450 Manihot esculenta HOM05D007073 ORTHO05D008855 1.0e-17 94.0 64 75.0
SalBow7G2056 Salvia bowleyana HOM05D007073 ORTHO05D008855 1.0e-17 94.0 64 71.9
Sc26g0003150 Simmondsia chinensis HOM05D007073 ORTHO05D008855 1.0e-17 94.0 64 76.6
MSTRG.1215 Avicennia marina HOM05D007073 ORTHO05D008855 1.4e-17 93.6 64 73.4
Zm00001eb403590 Zea mays HOM05D007073 ORTHO05D008855 1.4e-17 93.6 64 75.0
AT1G30845 Arabidopsis thaliana HOM05D007073 ORTHO05D008855 1.8e-17 93.2 64 73.4
Aa31LG6G9870 Aethionema arabicum HOM05D007073 ORTHO05D008855 2.3e-17 92.8 64 73.4
CARHR030330 Cardamine hirsuta HOM05D007073 ORTHO05D008855 2.3e-17 92.8 64 73.4
VMungo0251G2135 Vigna mungo HOM05D007073 ORTHO05D008855 2.3e-17 92.8 64 71.9
ECA247G1834 Erigeron canadensis HOM05D007073 ORTHO05D008855 3.0e-17 92.4 64 75.0
MD13G1087600 Malus domestica HOM05D007073 ORTHO05D008855 3.0e-17 92.4 71 73.2
RcHm_v2.0_Chr6g0302381 Rosa chinensis HOM05D007073 ORTHO05D008855 3.0e-17 92.4 64 78.1
Phvul.002G236200 Phaseolus vulgaris HOM05D007073 ORTHO05D008855 3.9e-17 92.0 64 71.9
AL1G45120 Arabidopsis lyrata HOM05D007073 ORTHO05D008855 5.2e-17 91.7 59 76.3
arahy.Tifrunner.gnm1.ann1.0LW32C Arachis hypogaea HOM05D007073 ORTHO05D008855 6.7e-17 91.3 64 70.3
arahy.Tifrunner.gnm1.ann1.F1G2D9 Arachis hypogaea HOM05D007073 ORTHO05D008855 6.7e-17 91.3 64 70.3
Ca_17949_v3 Cicer arietinum L. HOM05D007073 ORTHO05D008855 6.7e-17 91.3 64 70.3
Thhalv10009135m.g Eutrema salsugineum HOM05D007073 ORTHO05D008855 6.7e-17 91.3 64 70.3
Sp1g26740 Schrenkiella parvula HOM05D007073 ORTHO05D008855 6.7e-17 91.3 64 70.3
BcaC05g27117 Brassica carinata HOM05D007073 ORTHO05D008855 1.1e-16 90.5 64 70.3
BcaC05g27119 Brassica carinata HOM05D007073 ORTHO05D008855 1.1e-16 90.5 64 70.3
A09p35370 Brassica napus HOM05D007073 ORTHO05D008855 1.1e-16 90.5 64 70.3
C05p29970 Brassica napus HOM05D007073 ORTHO05D008855 1.1e-16 90.5 64 70.3
BolC5t31732H Brassica oleracea HOM05D007073 ORTHO05D008855 1.1e-16 90.5 64 70.3
BolC5t31736H Brassica oleracea HOM05D007073 ORTHO05D008855 1.1e-16 90.5 64 70.3
CANSAT11G0546 Cannabis sativa HOM05D007073 ORTHO05D008855 2.6e-16 89.4 56 82.1
Glyma.05G155900 Glycine max HOM05D007073 ORTHO05D008855 2.6e-16 89.4 59 74.6
Lalb_Chr12g0205331 Lupinus albus HOM05D007073 ORTHO05D008855 3.3e-16 89.0 64 70.3
MD15G1015600 Malus domestica HOM05D007073 ORTHO05D008855 3.3e-16 89.0 64 73.4
CDE08G0828 Ceratophyllum demersum HOM05D007073 ORTHO05D008855 5.7e-16 88.2 64 70.3
Actinidia37317 Actinidia chinensis HOM05D007073 ORTHO05D008855 7.4e-16 87.8 60 76.7
HPP92_025607 Vanilla planifolia HOM05D007073 ORTHO05D008855 7.4e-16 87.8 64 71.9
BcaB07g32745 Brassica carinata HOM05D007073 ORTHO05D008855 1.7e-15 86.7 59 72.9
CANSAT11G2499 Cannabis sativa HOM05D007073 ORTHO05D008855 2.8e-15 85.9 56 78.6
Rhsim06G0025500 Rhododendron simsii HOM05D000624 ORTHO05D000495 1.8e-14 83.2 51 84.3
ATR0945G003 Amborella trichopoda HOM05D007073 ORTHO05D008855 3.5e-13 79.0 58 69.0
SEGI_10735 Sequoiadendron giganteum HOM05D007073 ORTHO05D008855 5.9e-13 78.2 59 67.8
Actinidia26593 Actinidia chinensis HOM05D007073 ORTHO05D008855 3.8e-12 75.5 44 86.4
C05p29960 Brassica napus HOM05D007073 ORTHO05D008855 5.5e-11 71.6 48 72.9
DCAR_001380 Daucus carota HOM05D053474 ORTHO05D177113 8.0e-10 67.8 69 49.3
Mapoly0121s0038 Marchantia polymorpha HOM05D007073 ORTHO05D008855 2.3e-09 66.2 57 57.9
Gohir.A01G112900 Gossypium hirsutum HOM05D007073 ORTHO05D008855 4.0e-09 65.5 36 94.4
Gohir.D01G101000 Gossypium hirsutum HOM05D007073 ORTHO05D008855 4.0e-09 65.5 36 94.4
Pp3c8_14860 Physcomitrium patens HOM05D007073 ORTHO05D008855 5.2e-09 65.1 56 58.9
C05p30020 Brassica napus HOM05D007073 ORTHO05D008855 6.7e-09 64.7 59 55.9
BolC5t31739H Brassica oleracea HOM05D007073 ORTHO05D008855 6.7e-09 64.7 59 55.9
Cfa013916 Carpinus fangiana HOM05D007073 ORTHO05D008855 6.7e-09 64.7 36 91.7
CiPaw.07G153100 Carya illinoinensis HOM05D007073 ORTHO05D008855 8.8e-09 64.3 36 91.7
Prupe.1G369500 Prunus persica HOM05D007073 ORTHO05D008855 2.6e-08 62.8 59 59.3
Actinidia04603 Actinidia chinensis HOM05D007073 ORTHO05D008855 4.4e-08 62.0 67 59.7
FAN13G2867 Fragaria x ananassa HOM05D007073 ORTHO05D008855 5.7e-08 61.6 40 80.0
FAN04G0335 Fragaria x ananassa HOM05D007403 ORTHO05D009306 7.5e-08 61.2 61 55.7
AagrBONN_evm.TU.Sc2ySwM_344.4448 Anthoceros agrestis HOM05D007073 ORTHO05D008855 9.7e-08 60.8 52 59.6
Aqoxy6G02335_Aqoxy6G02336 Aquilegia oxysepala HOM05D000558 ORTHO05D001857 1.7e-07 60.1 42 78.6
Ciclev10002853m.g Citrus clementina HOM05D007073 ORTHO05D008855 1.7e-07 60.1 39 76.9
MELO3C010995.2 Cucumis melo HOM05D007073 ORTHO05D008855 1.7e-07 60.1 37 83.8
FAN18G2174 Fragaria x ananassa HOM05D007403 ORTHO05D009306 1.7e-07 60.1 36 83.3
Thecc.08G038900 Theobroma cacao HOM05D007073 ORTHO05D008855 2.2e-07 59.7 36 86.1
DCAR_010073 Daucus carota HOM05D053474 ORTHO05D178428 2.8e-07 59.3 78 47.4
AUR62014408 Chenopodium quinoa HOM05D007073 ORTHO05D008855 1.1e-06 57.4 36 83.3
Os03g0127000 Oryza sativa ssp. japonica HOM05D007073 ORTHO05D008855 1.4e-06 57.0 36 80.6
Nitab4.5_0005185g0010 Nicotiana tabacum HOM05D007073 ORTHO05D008855 5.3e-06 55.1 36 77.8


User provided reference genes

Program Settings