Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_017361 Daucus carota HOM05D000667 ORTHO05D004096 1.7e-105 386.0 188 100.0
DCAR_004822 Daucus carota HOM05D000667 ORTHO05D004096 7.4e-101 370.5 188 95.7
CSS0050416 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D004096 1.2e-50 203.8 397 35.5
Dinv32241 Davidia involucrata HOM05D000667 ORTHO05D004096 5.9e-50 201.4 403 34.0
CSS0039480 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D004096 2.3e-49 199.5 408 34.6
Hma1.2p1_0020F.1_g014030 Hydrangea macrophylla HOM05D000667 ORTHO05D004096 2.1e-47 193.0 406 32.3
QL05p057661 Quercus lobata HOM05D000667 ORTHO05D004096 2.1e-47 193.0 401 32.9
Lalb_Chr18g0055381 Lupinus albus HOM05D000667 ORTHO05D004096 1.8e-46 189.9 406 32.5
Peaxi162Scf00307g00074 Petunia axillaris HOM05D000667 ORTHO05D004096 4.0e-46 188.7 406 32.3
Rhsim13G0114300 Rhododendron simsii HOM05D000667 ORTHO05D004096 4.0e-46 188.7 406 32.8
TWI73G0887 Tripterygium wilfordii HOM05D000667 ORTHO05D004096 5.2e-46 188.3 406 32.0
RcHm_v2.0_Chr5g0014291 Rosa chinensis HOM05D000667 ORTHO05D004096 2.0e-45 186.4 406 32.8
Manes.17G071100 Manihot esculenta HOM05D000667 ORTHO05D004096 2.6e-45 186.0 406 32.0
Atru.chr10.1214 Acer truncatum HOM05D000667 ORTHO05D004096 3.4e-45 185.7 406 32.5
CANSAT35G0944 Cannabis sativa HOM05D000667 ORTHO05D004096 4.4e-45 185.3 406 32.0
Lj2P303T17 Lonicera japonica HOM05D000667 ORTHO05D004096 7.5e-45 184.5 406 33.3
Psat1g188160 Pisum sativum HOM05D000667 ORTHO05D004096 1.7e-44 183.3 406 31.3
Nitab4.5_0004527g0010 Nicotiana tabacum HOM05D000667 ORTHO05D004096 4.9e-44 181.8 406 31.8
PGR042G2716 Punica granatum HOM05D000667 ORTHO05D004096 4.9e-44 181.8 406 30.8
Prupe.4G081700 Prunus persica HOM05D000667 ORTHO05D004096 6.4e-44 181.4 406 31.8
Thecc.06G149500 Theobroma cacao HOM05D000667 ORTHO05D004096 6.4e-44 181.4 406 31.8
TAR629G0334 Trochodendron aralioides HOM05D000667 ORTHO05D004096 6.4e-44 181.4 406 31.5
COL.COLO4_31061 Corchorus olitorius HOM05D000667 ORTHO05D004096 1.1e-43 180.6 406 31.0
MELO3C002742.2 Cucumis melo HOM05D000667 ORTHO05D004096 2.4e-43 179.5 406 31.5
Manes.15G122200 Manihot esculenta HOM05D000667 ORTHO05D004096 4.1e-43 178.7 406 31.0
ClCG03G006780 Citrullus lanatus HOM05D000667 ORTHO05D004096 1.6e-42 176.8 406 31.3
HanXRQChr01g0003361 Helianthus annuus HOM05D000667 ORTHO05D004096 1.6e-42 176.8 406 32.8
CsaV3_1G032360 Cucumis sativus L. HOM05D000667 ORTHO05D004096 2.0e-42 176.4 406 31.3
Duzib160G0105 Durio zibethinus HOM05D000667 ORTHO05D004096 2.0e-42 176.4 406 31.0
Cc00_g01110 Coffea canephora HOM05D000667 ORTHO05D004096 2.7e-42 176.0 406 31.5
Gohir.D09G077366 Gossypium hirsutum HOM05D000667 ORTHO05D004096 2.7e-42 176.0 406 30.8
Gohir.D09G077500 Gossypium hirsutum HOM05D000667 ORTHO05D004096 2.7e-42 176.0 406 30.8
Gorai.006G092600 Gossypium raimondii HOM05D000667 ORTHO05D004096 2.7e-42 176.0 406 30.8
TPR.G26252 Trifolium pratense HOM05D000667 ORTHO05D004096 2.7e-42 176.0 387 31.8
Actinidia16706 Actinidia chinensis HOM05D000667 ORTHO05D004096 6.0e-42 174.9 402 31.3
FvH4_3g05461 Fragaria vesca HOM05D000667 ORTHO05D004096 6.0e-42 174.9 406 31.5
CSS0002746 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D004096 1.3e-41 173.7 406 31.3
CSS0004812 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D004096 1.3e-41 173.7 406 31.3
Duzib235G0040 Durio zibethinus HOM05D000667 ORTHO05D004096 1.3e-41 173.7 406 30.3
HanXRQChr11g0341261 Helianthus annuus HOM05D000667 ORTHO05D004096 1.7e-41 173.3 406 32.5
MD05G1283000 Malus domestica HOM05D000667 ORTHO05D004096 1.7e-41 173.3 406 30.5
Ciclev10015483m.g Citrus clementina HOM05D000667 ORTHO05D004096 2.3e-41 172.9 406 31.3
VMungo0540G0780 Vigna mungo HOM05D000667 ORTHO05D004096 3.0e-41 172.6 406 30.5
Sed0013854 Sechium edule HOM05D000667 ORTHO05D004096 3.9e-41 172.2 406 30.8
Oeu034141.1 Olea europaea HOM05D000667 ORTHO05D004096 5.0e-41 171.8 406 31.3
Phvul.006G165500 Phaseolus vulgaris HOM05D000667 ORTHO05D004096 5.0e-41 171.8 406 30.3
Medtr2g019230 Medicago truncatula HOM05D000667 ORTHO05D004096 8.6e-41 171.0 406 30.3
MD10G1261300 Malus domestica HOM05D000667 ORTHO05D004096 1.1e-40 170.6 406 30.8
arahy.Tifrunner.gnm1.ann1.BT8YZU Arachis hypogaea HOM05D000667 ORTHO05D004096 1.5e-40 170.2 406 30.5
arahy.Tifrunner.gnm1.ann1.MZ7XDG Arachis hypogaea HOM05D000667 ORTHO05D004096 1.5e-40 170.2 406 30.5
Gohir.A09G077500 Gossypium hirsutum HOM05D000667 ORTHO05D004096 3.3e-40 169.1 401 29.9
Nn3g20642 Nelumbo nucifera HOM05D000667 ORTHO05D004096 3.3e-40 169.1 407 31.0
PGSC0003DMG400003174 Solanum tuberosum HOM05D000667 ORTHO05D004096 4.3e-40 168.7 406 30.8
Potri.006G193800 Populus trichocarpa HOM05D000667 ORTHO05D004096 7.3e-40 167.9 406 30.0
Migut.H01358 Erythranthe guttata HOM05D000667 ORTHO05D004096 9.5e-40 167.5 409 30.1
MBI02_g36351_MAGBIO Magnolia biondii HOM05D000667 ORTHO05D004096 1.2e-39 167.2 407 30.2
Sed0011115 Sechium edule HOM05D000667 ORTHO05D004096 1.2e-39 167.2 406 30.3
Sopen02g006160 Solanum pennellii HOM05D000667 ORTHO05D004096 2.8e-39 166.0 406 30.0
MSTRG.16248 Avicennia marina HOM05D000667 ORTHO05D004096 3.6e-39 165.6 406 30.3
Sabra06G0148800 Salix brachista HOM05D000667 ORTHO05D004096 4.7e-39 165.2 406 29.8
Solyc02g021600.1 Solanum lycopersicum HOM05D000667 ORTHO05D004096 4.7e-39 165.2 406 30.0
Ah.14g088850 Amaranthus hybridus HOM05D000667 ORTHO05D004096 6.2e-39 164.9 402 29.6
AUR62014707 Chenopodium quinoa HOM05D000667 ORTHO05D004096 8.1e-39 164.5 407 30.0
EL10Ac8g20542 Beta vulgaris HOM05D000667 ORTHO05D004096 1.8e-38 163.3 404 29.5
AUR62012488 Chenopodium quinoa HOM05D000667 ORTHO05D004096 4.0e-38 162.2 362 32.0
Glyma.15G093300 Glycine max HOM05D000667 ORTHO05D004096 4.0e-38 162.2 406 30.0
Lj6g0000657 Lotus japonicus HOM05D000667 ORTHO05D004096 5.2e-38 161.8 406 30.5
Sc24g0001650 Simmondsia chinensis HOM05D000667 ORTHO05D004096 8.9e-38 161.0 406 29.8
MSTRG.14777 Avicennia marina HOM05D000667 ORTHO05D004096 4.4e-37 158.7 406 28.6
Sp1g25950 Schrenkiella parvula HOM05D000667 ORTHO05D004096 1.4e-35 153.7 407 29.2
CAN.G641.46 Capsicum annuum HOM05D000667 ORTHO05D004096 1.9e-35 153.3 407 29.5
Hund21282 Selenicereus undatus HOM05D000667 ORTHO05D004096 2.4e-35 152.9 403 28.8
Aqoxy1G01694 Aquilegia oxysepala HOM05D000667 ORTHO05D004096 4.1e-35 152.1 407 27.8
Ca_00536_v3 Cicer arietinum L. HOM05D000667 ORTHO05D004096 1.2e-34 150.6 406 28.8
Lsat_1_v5_gn_1_116980 Lactuca sativa HOM05D000667 ORTHO05D004096 1.6e-34 150.2 406 29.1
Nitab4.5_0000501g0040 Nicotiana tabacum HOM05D000667 ORTHO05D004096 4.6e-34 148.7 386 28.5
PSO675G5528 Papaver somniferum HOM05D000667 ORTHO05D004096 7.8e-34 147.9 407 29.7
Thhalv10007818m.g Eutrema salsugineum HOM05D000667 ORTHO05D004096 1.7e-33 146.7 407 28.0
BcaB07g32610 Brassica carinata HOM05D000667 ORTHO05D004096 3.0e-33 146.0 407 28.7
Oeu031276.1 Olea europaea HOM05D000667 ORTHO05D004096 3.0e-33 146.0 406 28.6
BcaC05g27027 Brassica carinata HOM05D000667 ORTHO05D004096 3.9e-33 145.6 407 28.5
A09p36430 Brassica napus HOM05D000667 ORTHO05D004096 3.9e-33 145.6 407 28.5
C05p28890 Brassica napus HOM05D000667 ORTHO05D004096 3.9e-33 145.6 407 28.5
BolC5t31609H Brassica oleracea HOM05D000667 ORTHO05D004096 3.9e-33 145.6 407 28.5
BraA09t39166Z Brassica rapa HOM05D000667 ORTHO05D004096 3.9e-33 145.6 407 28.5
CARHR029320 Cardamine hirsuta HOM05D000667 ORTHO05D004096 1.1e-32 144.1 407 28.5
TAR627G1045 Trochodendron aralioides HOM05D000667 ORTHO05D004096 4.3e-32 142.1 103 65.0
Aa31LG6G5580 Aethionema arabicum HOM05D000667 ORTHO05D004096 9.5e-32 141.0 407 27.8
CiPaw.09G122700 Carya illinoinensis HOM05D000667 ORTHO05D004096 1.6e-31 140.2 101 62.4
Glyma.13G218800 Glycine max HOM05D000667 ORTHO05D004096 8.1e-31 137.9 103 61.2
PSO541G1865 Papaver somniferum HOM05D000667 ORTHO05D004096 1.8e-30 136.7 401 28.4
AT1G30090 Arabidopsis thaliana HOM05D000667 ORTHO05D004096 2.4e-30 136.3 113 65.5
THA.LOC104820652 Tarenaya hassleriana HOM05D000667 ORTHO05D004096 5.2e-30 135.2 407 28.7
Migut.H01356 Erythranthe guttata HOM05D000667 ORTHO05D004096 1.5e-29 133.7 91 69.2
AL1G43990 Arabidopsis lyrata HOM05D000667 ORTHO05D004096 3.4e-29 132.5 113 63.7
Cpa.g.sc246.7 Carica papaya HOM05D000667 ORTHO05D004096 5.8e-29 131.7 91 68.1
Carub.0001s2831 Capsella rubella HOM05D000667 ORTHO05D004096 9.9e-29 131.0 113 62.8
Oeu006650.1 Olea europaea HOM05D000667 ORTHO05D004096 1.7e-28 130.2 103 60.2
Lsat_1_v5_gn_4_29341 Lactuca sativa HOM05D000667 ORTHO05D004096 2.9e-28 129.4 100 63.0
Gohir.A10G041600 Gossypium hirsutum HOM05D000667 ORTHO05D004096 4.9e-28 128.6 98 58.2
Os07g0153400 Oryza sativa ssp. japonica HOM05D000667 ORTHO05D004096 6.4e-28 128.3 408 26.0
Gorai.011G045000 Gossypium raimondii HOM05D000667 ORTHO05D004096 1.4e-27 127.1 98 56.1
Gohir.D10G042500 Gossypium hirsutum HOM05D000667 ORTHO05D004096 1.9e-27 126.7 98 56.1
Aqoxy5G03132 Aquilegia oxysepala HOM05D000667 ORTHO05D004096 4.1e-27 125.6 103 52.4
ATR1098G029 Amborella trichopoda HOM05D000667 ORTHO05D004096 9.2e-27 124.4 417 26.9
ECA234G3936 Erigeron canadensis HOM05D000667 ORTHO05D004096 1.6e-26 123.6 103 58.3
Nitab4.5_0002744g0050 Nicotiana tabacum HOM05D000667 ORTHO05D004096 7.8e-26 121.3 104 53.8
unitig_8.g4886 Utricularia gibba HOM05D000667 ORTHO05D004096 1.3e-25 120.6 407 26.0
Zm00001eb300170 Zea mays HOM05D000667 ORTHO05D004096 1.3e-25 120.6 413 26.4
HanXRQChr16g0525601 Helianthus annuus HOM05D000667 ORTHO05D004096 3.9e-25 119.0 104 56.7
SGA_v2.0_scaffold106G30656 Striga asiatica HOM05D000667 ORTHO05D004096 2.8e-23 112.8 406 25.4
Aqoxy1G01690 Aquilegia oxysepala HOM05D000667 ORTHO05D004096 3.6e-23 112.5 113 46.9
Nitab4.5_0000869g0010 Nicotiana tabacum HOM05D000667 ORTHO05D004096 1.3e-20 104.0 70 68.6
unitig_578.g16129 Utricularia gibba HOM05D000667 ORTHO05D004096 1.3e-20 104.0 91 54.9
Aqoxy5G03131 Aquilegia oxysepala HOM05D000667 ORTHO05D004096 2.7e-18 96.3 72 66.7
GSVIVG01021505001 Vitis vinifera HOM05D000667 ORTHO05D004096 6.6e-17 91.7 58 70.7
Nitab4.5_0002744g0040 Nicotiana tabacum HOM05D000667 ORTHO05D004096 1.5e-16 90.5 131 36.6
Haze_05613 Corylus avellana HOM05D000667 ORTHO05D004096 7.3e-16 88.2 181 33.7
ATR0580G133 Amborella trichopoda HOM05D000667 ORTHO05D004096 2.1e-15 86.7 103 40.8
AagrBONN_evm.TU.Sc2ySwM_369.512 Anthoceros agrestis HOM05D000667 ORTHO05D004096 2.8e-15 86.3 105 42.9
MBI14_g22131_MAGBIO Magnolia biondii HOM05D000667 ORTHO05D004096 4.8e-15 85.5 104 42.3
Atru.chr7.2649 Acer truncatum HOM05D000667 ORTHO05D004096 3.1e-14 82.8 104 44.2
SEGI_00935 Sequoiadendron giganteum HOM05D000667 ORTHO05D004096 1.5e-13 80.5 90 42.2
Manes.15G098200 Manihot esculenta HOM05D000667 ORTHO05D004096 2.0e-13 80.1 105 40.0
Sabra18G0014800 Salix brachista HOM05D000667 ORTHO05D004096 2.0e-13 80.1 105 41.9
TAR625G0547 Trochodendron aralioides HOM05D000667 ORTHO05D004096 2.0e-13 80.1 105 39.0
CiPaw.07G212200 Carya illinoinensis HOM05D000667 ORTHO05D004096 2.6e-13 79.7 105 39.0
SMO174G0059 Selaginella moellendorffii HOM05D000667 ORTHO05D004096 2.6e-13 79.7 100 38.0
GSVIVG01035518001 Vitis vinifera HOM05D000667 ORTHO05D004096 2.6e-13 79.7 96 41.7
Aqoxy7G03123 Aquilegia oxysepala HOM05D000667 ORTHO05D004096 3.4e-13 79.3 105 39.0
Duzib187G0973 Durio zibethinus HOM05D000667 ORTHO05D004096 7.6e-13 78.2 105 40.0
Nn2g12659 Nelumbo nucifera HOM05D000667 ORTHO05D004096 7.6e-13 78.2 105 39.0
CiPaw.07G212000 Carya illinoinensis HOM05D000667 ORTHO05D004096 9.9e-13 77.8 105 38.1
Thecc.09G007600 Theobroma cacao HOM05D000667 ORTHO05D004096 9.9e-13 77.8 105 40.0
Potri.018G007100 Populus trichocarpa HOM05D000667 ORTHO05D004096 1.3e-12 77.4 105 40.0
FAN20G2017 Fragaria x ananassa HOM05D000667 ORTHO05D004096 6.4e-12 75.1 105 39.0
FAN27G0657 Fragaria x ananassa HOM05D000667 ORTHO05D004096 6.4e-12 75.1 105 39.0
Ciclev10008681m.g Citrus clementina HOM05D000667 ORTHO05D004096 8.4e-12 74.7 101 39.6
Cpa.g.sc23.19 Carica papaya HOM05D000667 ORTHO05D004096 1.1e-11 74.3 105 40.0
Actinidia27057 Actinidia chinensis HOM05D000667 ORTHO05D004096 1.9e-11 73.6 46 67.4
Haze_21754 Corylus avellana HOM05D000667 ORTHO05D004096 1.9e-11 73.6 99 38.4
RcHm_v2.0_Chr6g0305031 Rosa chinensis HOM05D000667 ORTHO05D004096 2.4e-11 73.2 105 37.1
Cfa013278 Carpinus fangiana HOM05D002778 ORTHO05D003112 3.2e-11 72.8 150 32.0
FvH4_2g36671 Fragaria vesca HOM05D000667 ORTHO05D004096 3.2e-11 72.8 105 38.1
COL.COLO4_19029 Corchorus olitorius HOM05D000667 ORTHO05D004096 4.2e-11 72.4 105 37.1
Gohir.A05G064100 Gossypium hirsutum HOM05D000667 ORTHO05D004096 4.2e-11 72.4 107 41.1
TWI34G0704 Tripterygium wilfordii HOM05D000667 ORTHO05D004096 5.4e-11 72.0 105 38.1
Glyma.04G075700 Glycine max HOM05D000667 ORTHO05D004096 1.6e-10 70.5 101 36.6
CANSAT25G0354 Cannabis sativa HOM05D000667 ORTHO05D004096 2.7e-10 69.7 105 37.1
MD08G1127900 Malus domestica HOM05D000667 ORTHO05D004096 2.7e-10 69.7 105 39.0
PGR044G0476 Punica granatum HOM05D000667 ORTHO05D004096 6.0e-10 68.6 106 39.6
Glyma.06G076900 Glycine max HOM05D000667 ORTHO05D004096 7.9e-10 68.2 101 38.6
CDE05G0359 Ceratophyllum demersum HOM05D000667 ORTHO05D004096 1.8e-09 67.0 99 34.3
VMungo1309G0228 Vigna mungo HOM05D000667 ORTHO05D004096 3.9e-09 65.9 104 37.5
TWI75G0786 Tripterygium wilfordii HOM05D000667 ORTHO05D004096 5.1e-09 65.5 93 37.6
Zm00001eb389480 Zea mays HOM05D000667 ORTHO05D004096 5.1e-09 65.5 123 35.8
Lj1g0003153 Lotus japonicus HOM05D000667 ORTHO05D004096 1.1e-08 64.3 114 35.1
Psat0s1809g0080 Pisum sativum HOM05D000667 ORTHO05D004096 1.1e-08 64.3 95 35.8
Os06g0655500 Oryza sativa ssp. japonica HOM05D000667 ORTHO05D004096 1.5e-08 63.9 122 34.4
Prupe.1G459700 Prunus persica HOM05D000667 ORTHO05D004096 9.6e-08 61.2 105 36.2
Zm00001eb389500 Zea mays HOM05D000667 ORTHO05D004096 1.3e-07 60.8 122 34.4
Eucgr.E00142 Eucalyptus grandis HOM05D000667 ORTHO05D009057 1.6e-07 60.5 122 33.6
Eucgr.E00146 Eucalyptus grandis HOM05D000667 ORTHO05D009057 2.1e-07 60.1 122 32.8
Ca_15665_v3 Cicer arietinum L. HOM05D000667 ORTHO05D004096 2.8e-07 59.7 95 34.7
Peaxi162Scf00020g00236 Petunia axillaris HOM05D000667 ORTHO05D009057 3.7e-07 59.3 82 41.5
MD15G1107400 Malus domestica HOM05D000667 ORTHO05D004096 6.2e-07 58.5 105 34.3
Solyc01g094520.3 Solanum lycopersicum HOM05D000667 ORTHO05D009057 1.4e-06 57.4 82 37.8
GSVIVG01026912001 Vitis vinifera HOM05D000667 ORTHO05D009057 1.4e-06 57.4 127 30.7
FvH4_7g14191 Fragaria vesca HOM05D000667 ORTHO05D009057 3.1e-06 56.2 78 37.2
Sopen01g038330 Solanum pennellii HOM05D000667 ORTHO05D009057 3.1e-06 56.2 78 38.5
PGSC0003DMG400000165 Solanum tuberosum HOM05D000667 ORTHO05D009057 3.1e-06 56.2 82 37.8
QL12p025198 Quercus lobata HOM05D000667 ORTHO05D004096 4.0e-06 55.8 104 32.7
SGA_v2.0_scaffold95G28840 Striga asiatica HOM05D000667 ORTHO05D009057 4.0e-06 55.8 73 42.5
MSTRG.17261 Avicennia marina HOM05D000667 ORTHO05D009057 5.3e-06 55.5 80 36.2
FAN10G3555 Fragaria x ananassa HOM05D000667 ORTHO05D009057 6.9e-06 55.1 56 46.4
Thecc.01G360100 Theobroma cacao HOM05D000667 ORTHO05D009057 6.9e-06 55.1 53 52.8
Nitab4.5_0009646g0070 Nicotiana tabacum HOM05D005561 ORTHO05D006834 9.0e-06 54.7 121 26.4


User provided reference genes

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