Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 0.0e+00 1508.0 818 100.0
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.4e-265 919.1 825 62.4
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 1.6e-264 916.4 870 59.5
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 4.5e-251 871.7 823 58.8
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 5.4e-249 864.8 776 59.0
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 1.6e-248 863.2 829 60.3
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 8.4e-242 840.9 817 58.8
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 4.6e-240 835.1 840 56.2
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 1.6e-229 800.0 762 57.3
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 3.1e-228 795.8 781 57.9
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 3.1e-228 795.8 778 58.9
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 6.9e-228 794.7 617 67.1
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 3.8e-226 788.9 831 54.2
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 5.5e-225 785.0 816 56.4
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 3.6e-224 782.3 807 54.2
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 1.0e-223 780.8 781 56.1
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 6.7e-223 778.1 809 54.4
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 3.3e-222 775.8 845 52.8
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 3.3e-222 775.8 841 52.2
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 1.6e-221 773.5 830 52.9
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 4.8e-221 771.9 718 58.2
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 6.3e-221 771.5 832 54.7
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 1.4e-220 770.4 808 53.0
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 2.6e-219 766.1 825 51.9
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 6.5e-218 761.5 723 56.4
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 8.5e-218 761.1 721 57.0
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 2.5e-217 759.6 853 52.4
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 9.4e-217 757.7 792 52.9
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 3.6e-216 755.7 818 51.6
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 1.4e-215 753.8 719 57.2
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 9.7e-214 747.7 817 52.6
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 1.3e-213 747.3 774 54.3
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 1.7e-213 746.9 817 52.8
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 1.1e-212 744.2 732 56.0
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 5.3e-212 741.9 800 54.9
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 1.5e-211 740.3 849 50.4
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 3.4e-211 739.2 813 52.5
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 4.5e-211 738.8 770 56.0
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 2.9e-210 736.1 701 58.2
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 3.6e-208 729.2 762 52.5
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 6.3e-205 718.4 776 54.0
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 7.0e-204 714.9 819 51.6
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 3.5e-203 712.6 841 50.1
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 1.1e-201 707.6 758 50.8
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 1.5e-201 707.2 824 50.5
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 2.5e-201 706.4 834 50.6
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 4.2e-201 705.7 828 50.6
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 7.2e-201 704.9 755 52.5
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 3.6e-200 702.6 790 49.9
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 1.4e-199 700.7 814 51.6
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 1.5e-198 697.2 829 50.1
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 5.7e-198 695.3 807 48.9
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 2.2e-197 693.3 811 48.7
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 4.1e-196 689.1 821 49.1
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 3.5e-195 686.0 848 49.9
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 7.7e-195 684.9 722 51.4
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 1.7e-194 683.7 837 49.3
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 9.4e-193 677.9 842 47.6
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 9.4e-193 677.9 819 47.0
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 1.2e-192 677.6 779 48.8
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 1.2e-192 677.6 779 48.8
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 1.2e-192 677.6 802 48.5
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 6.8e-191 671.8 822 47.3
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 8.8e-191 671.4 841 47.4
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 5.7e-190 668.7 715 50.2
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 7.5e-190 668.3 850 47.6
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 9.8e-190 667.9 809 49.2
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 6.3e-189 665.2 850 47.5
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 1.4e-188 664.1 721 50.5
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 7.0e-188 661.8 726 51.1
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 1.2e-187 661.0 811 46.9
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 2.0e-187 660.2 763 48.9
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 7.7e-187 658.3 855 46.8
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 1.0e-186 657.9 838 49.0
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 3.8e-186 656.0 805 49.7
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 1.1e-185 654.4 831 45.8
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 6.1e-184 648.7 832 45.9
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 4.4e-182 642.5 830 46.1
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 6.3e-181 638.6 825 47.2
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 3.2e-172 609.8 700 49.7
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 3.0e-162 576.6 781 43.0
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 2.0e-150 537.3 361 77.0
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 5.1e-146 522.7 799 41.3
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 3.9e-130 469.9 804 38.4
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 4.3e-121 439.9 772 37.4
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 7.6e-110 402.5 775 34.7
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 8.8e-106 389.0 722 37.1
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 1.7e-101 374.8 791 33.1
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.2e-93 347.8 446 43.0
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 1.0e-85 322.4 732 31.3
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 3.8e-85 320.5 417 42.7
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 4.4e-81 307.0 514 36.6
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 1.4e-79 302.0 180 81.1
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 4.1e-79 300.4 719 29.1
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 1.3e-69 268.9 825 29.0
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 2.4e-63 248.1 723 28.2
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 3.6e-59 234.2 756 27.9
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 5.4e-47 193.7 246 45.5
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 8.1e-35 153.3 89 85.4
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 5.8e-33 147.1 90 77.8
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.7e-32 145.6 196 41.3
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 8.4e-32 143.3 317 33.1
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 2.1e-30 138.7 432 28.7
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 1.2e-27 129.4 193 52.8
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 1.5e-25 122.5 784 22.8
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 4.3e-20 104.4 111 51.4
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 2.0e-17 95.5 89 57.3
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 1.3e-13 82.8 151 36.4
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 8.1e-11 73.6 103 38.8
RcHm_v2.0_Chr2g0166391 Rosa chinensis HOM05D003845 ORTHO05D004161 3.4e-09 68.2 69 53.6
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 5.8e-09 67.4 210 26.7
Actinidia15876 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.9e-07 62.4 60 50.0


User provided reference genes

Program Settings