Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_017190 Daucus carota HOM05D006950 ORTHO05D008798 2.5e-175 618.6 298 100.0
Lj4A191T50 Lonicera japonica HOM05D006950 ORTHO05D008798 1.2e-113 413.7 341 62.5
Dinv33949 Davidia involucrata HOM05D006950 ORTHO05D008798 1.1e-109 400.6 344 60.2
Actinidia36323 Actinidia chinensis HOM05D006950 ORTHO05D008798 1.5e-108 396.7 340 60.0
vmacro05553 Vaccinium macrocarpon HOM05D006950 ORTHO05D008798 9.9e-108 394.0 344 60.8
Nitab4.5_0000659g0020 Nicotiana tabacum HOM05D006950 ORTHO05D008798 5.4e-106 388.3 335 59.7
Nitab4.5_0000912g0220 Nicotiana tabacum HOM05D006950 ORTHO05D008798 9.3e-106 387.5 328 59.8
PGSC0003DMG400026406 Solanum tuberosum HOM05D006950 ORTHO05D008798 1.2e-105 387.1 328 60.1
Cc07_g08790 Coffea canephora HOM05D006950 ORTHO05D008798 2.7e-105 386.0 336 59.2
Peaxi162Scf00394g00061 Petunia axillaris HOM05D006950 ORTHO05D008798 1.3e-104 383.6 345 58.3
CAN.G625.25 Capsicum annuum HOM05D006950 ORTHO05D008798 5.1e-104 381.7 322 59.3
Hma1.2p1_0136F.1_g062250 Hydrangea macrophylla HOM05D006950 ORTHO05D008798 9.6e-103 377.5 339 58.7
TAR629G2916 Trochodendron aralioides HOM05D006950 ORTHO05D008798 3.6e-102 375.6 326 59.8
Oeu007452.1 Olea europaea HOM05D006950 ORTHO05D008798 1.4e-101 373.6 340 57.9
Potri.004G099300 Populus trichocarpa HOM05D006950 ORTHO05D008798 6.9e-101 371.3 329 58.4
MSTRG.15296 Avicennia marina HOM05D006950 ORTHO05D008798 9.0e-101 370.9 343 57.1
Sopen02g030760 Solanum pennellii HOM05D006950 ORTHO05D008798 1.5e-100 370.2 328 57.6
Ciclev10012146m.g Citrus clementina HOM05D006950 ORTHO05D008798 5.8e-100 368.2 336 56.8
GSVIVG01031019001 Vitis vinifera HOM05D006950 ORTHO05D008798 5.8e-100 368.2 312 61.5
Manes.02G068900 Manihot esculenta HOM05D006950 ORTHO05D008798 1.7e-99 366.7 326 58.0
Prupe.3G142000 Prunus persica HOM05D006950 ORTHO05D008798 1.7e-99 366.7 332 56.3
Atru.chr1.1690 Acer truncatum HOM05D006950 ORTHO05D008798 3.8e-99 365.5 328 57.0
CANSAT78G2296 Cannabis sativa HOM05D006950 ORTHO05D008798 6.4e-99 364.8 343 56.0
Cpa.g.sc282.6 Carica papaya HOM05D006950 ORTHO05D008798 6.4e-99 364.8 317 60.3
Haze_14155 Corylus avellana HOM05D006950 ORTHO05D008798 6.4e-99 364.8 332 57.5
Migut.L00319 Erythranthe guttata HOM05D006950 ORTHO05D008798 2.4e-98 362.8 346 56.1
Gorai.007G181600 Gossypium raimondii HOM05D006950 ORTHO05D008798 3.2e-98 362.5 335 56.4
Gohir.A11G163600 Gossypium hirsutum HOM05D006950 ORTHO05D008798 4.2e-98 362.1 335 56.1
MD17G1244700 Malus domestica HOM05D006950 ORTHO05D008798 5.5e-98 361.7 333 56.2
Gohir.D11G169900 Gossypium hirsutum HOM05D006950 ORTHO05D008798 9.3e-98 360.9 335 55.8
CiPaw.04G042300 Carya illinoinensis HOM05D006950 ORTHO05D008798 1.2e-97 360.5 329 57.1
Thecc.04G133400 Theobroma cacao HOM05D006950 ORTHO05D008798 1.2e-97 360.5 327 57.8
TWI53G1811 Tripterygium wilfordii HOM05D006950 ORTHO05D008798 1.2e-97 360.5 322 58.7
PGR142G3639 Punica granatum HOM05D006950 ORTHO05D008798 3.9e-96 355.5 318 57.9
HanXRQChr15g0471491 Helianthus annuus HOM05D006950 ORTHO05D008798 4.3e-95 352.1 331 55.9
Aqoxy3G00267 Aquilegia oxysepala HOM05D006950 ORTHO05D008798 5.6e-95 351.7 320 55.9
Glyma.18G296400 Glycine max HOM05D006950 ORTHO05D008798 1.8e-93 346.7 335 54.9
Lj1g0016691 Lotus japonicus HOM05D006950 ORTHO05D008798 2.4e-93 346.3 312 58.0
VMungo1383G3190 Vigna mungo HOM05D006950 ORTHO05D008798 4.0e-93 345.5 339 54.3
Nn3g17879 Nelumbo nucifera HOM05D006950 ORTHO05D008798 5.3e-93 345.1 321 56.1
PSO017G6790 Papaver somniferum HOM05D006950 ORTHO05D008798 1.5e-92 343.6 319 55.5
ECA246G0391 Erigeron canadensis HOM05D006950 ORTHO05D008798 2.0e-92 343.2 325 55.1
Medtr7g007310 Medicago truncatula HOM05D006950 ORTHO05D008798 3.4e-92 342.4 328 54.0
arahy.Tifrunner.gnm1.ann1.J0JTFL Arachis hypogaea HOM05D006950 ORTHO05D008798 1.0e-91 340.9 332 53.3
arahy.Tifrunner.gnm1.ann1.QXSY6T Arachis hypogaea HOM05D006950 ORTHO05D008798 1.0e-91 340.9 332 53.3
EL10Ac2g04564 Beta vulgaris HOM05D006950 ORTHO05D008798 1.3e-91 340.5 338 54.4
AL7G52280 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 1.7e-91 340.1 322 55.6
AL7G52430 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 1.7e-91 340.1 322 55.6
MBI16_g34414_MAGBIO Magnolia biondii HOM05D006950 ORTHO05D008798 1.7e-91 340.1 331 53.8
Phvul.008G006100 Phaseolus vulgaris HOM05D006950 ORTHO05D008798 2.2e-91 339.7 338 53.3
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 3.8e-91 339.0 325 54.8
AL7G52300 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 6.5e-91 338.2 324 54.9
Aa31LG9G17120 Aethionema arabicum HOM05D006950 ORTHO05D008798 8.4e-91 337.8 332 53.3
CsaV3_1G032300 Cucumis sativus L. HOM05D006950 ORTHO05D008798 1.4e-90 337.0 320 54.4
A07p19680 Brassica napus HOM05D006950 ORTHO05D008798 1.9e-90 336.7 327 54.1
THA.LOC104805569 Tarenaya hassleriana HOM05D006950 ORTHO05D008798 1.9e-90 336.7 326 54.6
BolC6t37017H Brassica oleracea HOM05D006950 ORTHO05D008798 2.5e-90 336.3 329 53.8
Lsat_1_v5_gn_3_79740 Lactuca sativa HOM05D006950 ORTHO05D008798 2.5e-90 336.3 345 54.8
BraA07t29668Z Brassica rapa HOM05D006950 ORTHO05D008798 3.2e-90 335.9 327 53.8
Thhalv10027821m.g Eutrema salsugineum HOM05D006950 ORTHO05D008798 3.2e-90 335.9 324 54.9
Lalb_Chr17g0335791 Lupinus albus HOM05D006950 ORTHO05D008798 3.2e-90 335.9 315 55.6
TPR.G9714 Trifolium pratense HOM05D006950 ORTHO05D008798 3.2e-90 335.9 319 55.2
Hund13713 Selenicereus undatus HOM05D006950 ORTHO05D008798 5.5e-90 335.1 336 53.9
PSO478G4580 Papaver somniferum HOM05D006950 ORTHO05D008798 7.1e-90 334.7 318 55.3
Sed0021084 Sechium edule HOM05D006950 ORTHO05D008798 1.6e-89 333.6 320 53.8
C06p18110 Brassica napus HOM05D006950 ORTHO05D008798 2.7e-89 332.8 327 52.9
ClCG03G006740 Citrullus lanatus HOM05D006950 ORTHO05D008798 2.7e-89 332.8 345 51.3
Eucgr.G03073 Eucalyptus grandis HOM05D006950 ORTHO05D008798 7.9e-89 331.3 312 55.4
Eucgr.G03074 Eucalyptus grandis HOM05D006950 ORTHO05D008798 1.8e-88 330.1 312 53.8
BcaC08g44377 Brassica carinata HOM05D006950 ORTHO05D008798 2.3e-88 329.7 327 52.3
ATR1125G044 Amborella trichopoda HOM05D006950 ORTHO05D008798 4.8e-86 322.0 326 53.1
CDE06G1236 Ceratophyllum demersum HOM05D006950 ORTHO05D008798 1.8e-85 320.1 315 52.1
AUR62023300 Chenopodium quinoa HOM05D006950 ORTHO05D008798 3.2e-82 309.3 312 52.6
Carub.0007s3770 Capsella rubella HOM05D006950 ORTHO05D008798 2.5e-79 299.7 270 56.3
Sc11g0008340 Simmondsia chinensis HOM05D006950 ORTHO05D008798 4.3e-79 298.9 327 50.5
Duzib138G1034 Durio zibethinus HOM05D006950 ORTHO05D008798 9.7e-79 297.7 282 57.1
Sp7g03690 Schrenkiella parvula HOM05D006950 ORTHO05D008798 3.7e-78 295.8 286 54.9
Psat3g205440 Pisum sativum HOM05D006950 ORTHO05D008798 4.8e-78 295.4 315 50.8
BcaB02g08012 Brassica carinata HOM05D006950 ORTHO05D008798 5.9e-76 288.5 288 53.1
Cfa007922 Carpinus fangiana HOM05D006950 ORTHO05D008798 5.0e-75 285.4 362 45.9
CSS0013921 Camellia sinensis var. sinensis HOM05D006950 ORTHO05D008798 9.4e-74 281.2 200 69.0
AL686U10010 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 2.7e-73 279.6 275 54.2
MELO3C002748.2 Cucumis melo HOM05D006950 ORTHO05D008798 9.1e-69 264.6 274 51.8
QL02p051313 Quercus lobata HOM05D006950 ORTHO05D008798 1.5e-68 263.8 186 67.7
Rhsim10G0067400 Rhododendron simsii HOM05D006950 ORTHO05D008798 5.9e-68 261.9 328 47.6
Sabra04G0080700 Salix brachista HOM05D006950 ORTHO05D008798 9.4e-66 254.6 187 66.8
Pp3c2_1510 Physcomitrium patens HOM05D006950 ORTHO05D008798 2.2e-62 243.4 301 42.5
COL.COLO4_09336 Corchorus olitorius HOM05D006950 ORTHO05D008798 4.8e-62 242.3 311 45.7
Mapoly0010s0040 Marchantia polymorpha HOM05D006950 ORTHO05D008798 4.8e-62 242.3 319 40.4
Nn3g17880 Nelumbo nucifera HOM05D006950 ORTHO05D008798 9.1e-61 238.0 188 60.6
SMO232G0122 Selaginella moellendorffii HOM05D006950 ORTHO05D008798 8.5e-59 231.5 306 42.5
AL7G52400 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 1.2e-57 227.6 289 46.4
AT5G38360 Arabidopsis thaliana HOM05D006950 ORTHO05D008798 5.2e-56 222.2 181 59.7
Ca_04046_v3 Cicer arietinum L. HOM05D006950 ORTHO05D008798 6.7e-56 221.9 227 51.5
CBR_g51039 Chara braunii HOM05D006950 ORTHO05D008798 2.1e-49 200.3 356 33.7
AUR62009002 Chenopodium quinoa HOM05D006950 ORTHO05D008798 5.2e-48 195.7 322 40.1
CARHR214230 Cardamine hirsuta HOM05D006950 ORTHO05D008798 3.4e-47 193.0 208 51.0
Cre04.g213100 Chlamydomonas reinhardtii HOM05D006950 ORTHO05D008798 2.7e-44 183.3 337 33.8
CDE12G0582 Ceratophyllum demersum HOM05D006950 ORTHO05D008798 4.9e-38 162.5 269 39.4
MCO15G495 Micromonas commoda HOM05D006950 ORTHO05D008798 4.9e-38 162.5 260 34.2
AagrBONN_evm.TU.Sc2ySwM_362.1440 Anthoceros agrestis HOM05D006950 ORTHO05D008798 2.4e-37 160.2 144 56.9
CSS0023207 Camellia sinensis var. sinensis HOM05D006950 ORTHO05D008798 5.0e-35 152.5 117 63.2
AL7G52260 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 4.3e-34 149.4 114 62.3
arahy.Tifrunner.gnm1.ann1.J8JPII Arachis hypogaea HOM05D006950 ORTHO05D008798 2.3e-32 143.7 169 46.2
Ca_04053_v3 Cicer arietinum L. HOM05D006950 ORTHO05D008798 1.8e-29 134.0 89 70.8
QL02p051310 Quercus lobata HOM05D006950 ORTHO05D008798 1.6e-28 131.0 88 72.7
Glyma.08G365850 Glycine max HOM05D006950 ORTHO05D008798 3.9e-27 126.3 94 64.9
Os04g0381400 Oryza sativa ssp. japonica HOM05D006950 ORTHO05D008798 6.2e-25 119.0 117 53.0
Solyc02g086080.4 Solanum lycopersicum HOM05D006950 ORTHO05D008798 1.8e-24 117.5 81 65.4
arahy.Tifrunner.gnm1.ann1.5L16AK Arachis hypogaea HOM05D006950 ORTHO05D008798 1.3e-22 111.3 162 38.3
arahy.Tifrunner.gnm1.ann1.IRCK44 Arachis hypogaea HOM05D006950 ORTHO05D008798 1.3e-22 111.3 172 39.0
AagrBONN_evm.TU.Sc2ySwM_368.701 Anthoceros agrestis HOM05D006950 ORTHO05D008798 4.0e-16 89.7 274 25.9
PRCOL_00005525 Prasinoderma coloniale HOM05D006950 ORTHO05D008798 3.4e-15 86.7 178 36.5
arahy.Tifrunner.gnm1.ann1.BFZE3W Arachis hypogaea HOM05D006950 ORTHO05D008798 2.7e-12 77.0 58 65.5
Potri.017G115350 Populus trichocarpa HOM05D006950 ORTHO05D008798 2.0e-07 60.8 52 57.7
Haze_01682 Corylus avellana HOM05D006950 ORTHO05D043621 7.6e-07 58.9 30 76.7
AUR62017447 Chenopodium quinoa HOM05D000916 ORTHO05D007921 1.3e-06 58.2 138 34.1
arahy.Tifrunner.gnm1.ann1.G72GGE Arachis hypogaea HOM05D000916 ORTHO05D007921 2.9e-06 57.0 105 33.3
Cc08_g11570 Coffea canephora HOM05D000916 ORTHO05D007921 2.9e-06 57.0 118 34.7
MBI03_g28954_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D007921 3.8e-06 56.6 140 34.3
AUR62032516 Chenopodium quinoa HOM05D000916 ORTHO05D007921 4.9e-06 56.2 84 41.7
MSTRG.25473 Avicennia marina HOM05D000916 ORTHO05D007921 6.4e-06 55.8 111 36.0
HanXRQChr09g0266951 Helianthus annuus HOM05D000916 ORTHO05D007921 6.4e-06 55.8 106 34.9
Eucgr.F04110 Eucalyptus grandis HOM05D000916 ORTHO05D007921 8.4e-06 55.5 108 38.0
Medtr1g076920 Medicago truncatula HOM05D000916 ORTHO05D007921 8.4e-06 55.5 85 40.0


User provided reference genes

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