Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 4.4e-192 674.5 346 100.0
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 7.4e-115 417.9 330 66.1
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 2.8e-114 416.0 329 66.3
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 1.2e-112 410.6 319 65.8
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 4.5e-112 408.7 344 61.6
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 4.5e-112 408.7 302 66.2
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 1.7e-111 406.8 328 64.9
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 2.9e-111 406.0 329 65.3
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 8.5e-111 404.4 321 65.1
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 1.9e-110 403.3 334 63.5
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 3.2e-110 402.5 320 64.7
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 7.2e-110 401.4 331 64.0
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 9.4e-110 401.0 335 63.9
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 9.4e-110 401.0 331 64.0
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 3.6e-109 399.1 326 64.1
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 4.7e-109 398.7 336 61.9
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 8.0e-109 397.9 332 63.9
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 1.0e-108 397.5 333 61.9
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 1.4e-108 397.1 329 63.2
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 1.8e-108 396.7 335 63.3
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 1.8e-108 396.7 309 65.4
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 2.3e-108 396.4 331 63.7
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 4.0e-108 395.6 337 62.3
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 4.0e-108 395.6 327 63.3
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 5.2e-108 395.2 337 62.0
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 6.7e-108 394.8 347 62.2
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 8.8e-108 394.4 331 64.4
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 8.8e-108 394.4 315 64.8
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 8.8e-108 394.4 323 63.2
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 1.5e-107 393.7 331 64.4
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 5.7e-107 391.7 313 66.8
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 7.5e-107 391.3 342 60.2
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 1.3e-106 390.6 315 64.4
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 1.3e-106 390.6 330 62.1
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 1.3e-106 390.6 330 61.8
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 2.2e-106 389.8 337 61.4
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 2.2e-106 389.8 337 61.4
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 2.8e-106 389.4 344 61.0
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 4.8e-106 388.7 360 58.6
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 6.3e-106 388.3 333 60.4
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 1.1e-105 387.5 332 60.8
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 1.4e-105 387.1 331 63.1
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 1.8e-105 386.7 331 61.6
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 1.0e-103 380.9 327 60.9
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 1.3e-103 380.6 318 61.9
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 3.8e-103 379.0 326 62.0
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 5.0e-103 378.6 342 59.9
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 6.5e-103 378.3 317 62.1
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 6.5e-103 378.3 317 61.8
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 6.5e-103 378.3 343 59.5
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 8.5e-103 377.9 317 61.8
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.1e-102 377.5 348 58.9
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 4.2e-102 375.6 324 59.9
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 7.2e-102 374.8 332 58.4
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 1.2e-101 374.0 340 59.7
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 2.1e-101 373.2 330 60.0
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 2.1e-101 373.2 340 58.2
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 4.7e-101 372.1 338 58.6
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 6.1e-101 371.7 341 59.5
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 1.0e-100 370.9 353 56.7
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 1.8e-100 370.2 341 58.7
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 1.8e-100 370.2 331 60.1
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 4.0e-100 369.0 326 60.4
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 4.0e-100 369.0 303 64.0
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 6.8e-100 368.2 342 60.2
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 2.6e-99 366.3 298 64.8
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 4.4e-99 365.5 343 57.7
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 7.5e-99 364.8 341 58.4
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 2.2e-98 363.2 323 62.5
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 2.2e-98 363.2 326 59.8
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.1e-97 360.9 347 56.8
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 1.1e-97 360.9 336 58.9
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 2.4e-97 359.8 355 55.2
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.6e-96 357.1 366 54.9
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 1.6e-96 357.1 339 57.5
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 1.6e-96 357.1 355 54.6
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 2.7e-96 356.3 341 58.1
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 2.9e-95 352.8 346 57.2
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 6.6e-95 351.7 346 57.2
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 2.0e-91 340.1 370 52.7
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 1.0e-87 327.8 297 59.3
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 3.6e-85 319.3 321 54.2
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.4e-84 317.4 332 55.7
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.8e-84 317.0 332 56.0
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 2.2e-82 310.1 264 61.4
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 8.3e-82 308.1 304 56.6
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 6.0e-80 302.0 376 48.4
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 8.6e-79 298.1 298 57.7
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 1.2e-77 294.3 269 58.0
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 2.1e-77 293.5 329 52.0
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 3.4e-75 286.2 261 59.8
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 4.4e-75 285.8 230 66.5
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 5.8e-75 285.4 250 60.0
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 7.5e-75 285.0 232 63.4
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 1.3e-74 284.3 334 50.9
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 1.9e-73 280.4 266 58.3
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 8.1e-69 265.0 234 58.5
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 3.4e-67 259.6 303 49.2
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 5.8e-67 258.8 343 44.9
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 1.7e-66 257.3 274 52.9
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 8.3e-66 255.0 383 42.8
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 1.3e-63 247.7 311 46.6
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 1.7e-63 247.3 238 57.6
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 7.1e-57 225.3 283 46.3
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 1.3e-55 221.1 334 41.9
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 2.6e-51 206.8 249 48.2
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 7.3e-46 188.7 183 55.2
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 2.4e-41 173.7 233 42.5
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 3.0e-39 166.8 161 57.1
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 5.8e-35 152.5 98 75.5
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 5.3e-28 129.4 87 69.0
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 3.4e-27 126.7 72 83.3
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 2.7e-24 117.1 86 62.8
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 1.8e-23 114.4 278 32.4
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 3.9e-23 113.2 104 58.7
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 5.7e-22 109.4 104 57.7
CDE10G0215 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.4e-17 94.7 60 75.0
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 5.5e-17 92.8 124 41.9
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 1.8e-15 87.8 160 33.8
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 2.4e-12 77.4 54 70.4
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 2.4e-12 77.4 54 70.4
TPR.G33085 Trifolium pratense HOM05D006699 ORTHO05D008399 7.2e-09 65.9 42 76.2
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 1.4e-07 61.6 75 44.0
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 5.7e-06 56.2 170 30.0


User provided reference genes

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