Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_017022 Daucus carota HOM05D023499 ORTHO05D029204 4.7e-138 494.6 262 100.0
DCAR_017023 Daucus carota HOM05D023499 ORTHO05D029204 4.7e-138 494.6 262 100.0
DCAR_019840 Daucus carota HOM05D000184 ORTHO05D000032 6.0e-24 115.5 358 32.7
CSS0017966 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 1.2e-21 107.8 380 32.1
Actinidia22023 Actinidia chinensis HOM05D000184 ORTHO05D000032 1.5e-19 100.9 300 33.3
Hma1.2p1_0183F.1_g080780 Hydrangea macrophylla HOM05D000184 ORTHO05D000032 1.3e-18 97.8 375 30.7
Oeu061764.1 Olea europaea HOM05D000184 ORTHO05D000032 2.9e-18 96.7 324 33.6
Dinv14282 Davidia involucrata HOM05D000184 ORTHO05D000032 1.1e-17 94.7 150 44.0
QL07p023341 Quercus lobata HOM05D000184 ORTHO05D000032 3.2e-17 93.2 391 29.9
CSS0005408 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 1.2e-16 91.3 345 31.9
Cc06_g16130 Coffea canephora HOM05D000184 ORTHO05D000032 2.7e-16 90.1 324 31.2
Manes.08G045400 Manihot esculenta HOM05D000184 ORTHO05D000032 1.0e-15 88.2 373 26.5
Actinidia40439 Actinidia chinensis HOM05D000184 ORTHO05D000032 2.5e-14 83.6 299 30.8
COL.COLO4_36147 Corchorus olitorius HOM05D000184 ORTHO05D000032 4.8e-13 79.3 92 59.8
Potri.006G191000 Populus trichocarpa HOM05D000184 ORTHO05D000032 6.2e-13 79.0 373 28.7
Manes.09G033500 Manihot esculenta HOM05D000184 ORTHO05D000032 2.4e-12 77.0 377 28.6
Rhsim03G0008500 Rhododendron simsii HOM05D000184 ORTHO05D000032 2.4e-12 77.0 385 27.5
TAR633G2361 Trochodendron aralioides HOM05D000184 ORTHO05D000032 6.9e-12 75.5 204 32.8
Atru.chr8.1073 Acer truncatum HOM05D000184 ORTHO05D000032 9.0e-12 75.1 370 28.6
Haze_19972 Corylus avellana HOM05D000184 ORTHO05D000032 9.0e-12 75.1 383 27.2
Sabra06G0146300 Salix brachista HOM05D000184 ORTHO05D000032 1.2e-11 74.7 373 28.7
Gorai.002G225400 Gossypium raimondii HOM05D000184 ORTHO05D000032 2.6e-11 73.6 92 58.7
Lju124A29T43 Lonicera japonica HOM05D000184 ORTHO05D000032 2.6e-11 73.6 128 38.3
Duzib093G1944 Durio zibethinus HOM05D000184 ORTHO05D000032 3.4e-11 73.2 104 50.0
Oeu007773.1 Olea europaea HOM05D000184 ORTHO05D000032 3.4e-11 73.2 305 29.5
Prupe.7G075300 Prunus persica HOM05D000184 ORTHO05D000032 3.4e-11 73.2 91 58.2
Sc13g0002190 Simmondsia chinensis HOM05D000184 ORTHO05D000032 5.8e-11 72.4 92 55.4
AUR62024316 Chenopodium quinoa HOM05D000184 ORTHO05D000032 2.2e-10 70.5 386 27.5
BcaB01g06003 Brassica carinata HOM05D000184 ORTHO05D000032 2.9e-10 70.1 92 54.3
CARHR206380 Cardamine hirsuta HOM05D000184 ORTHO05D000032 3.8e-10 69.7 92 55.4
AUR62012048 Chenopodium quinoa HOM05D000184 ORTHO05D000032 3.8e-10 69.7 386 27.5
TPR.G13233 Trifolium pratense HOM05D000184 ORTHO05D000032 4.9e-10 69.3 91 44.0
TAR623G0814 Trochodendron aralioides HOM05D000184 ORTHO05D000032 4.9e-10 69.3 311 25.1
Migut.K00047 Erythranthe guttata HOM05D000184 ORTHO05D000032 6.4e-10 68.9 83 54.2
A10p29580 Brassica napus HOM05D000184 ORTHO05D000032 8.4e-10 68.6 92 54.3
MD12G1058400 Malus domestica HOM05D000184 ORTHO05D000032 8.4e-10 68.6 385 26.5
PSO339G5823 Papaver somniferum HOM05D000184 ORTHO05D000032 8.4e-10 68.6 86 57.0
PSO384G0099 Papaver somniferum HOM05D000184 ORTHO05D000032 8.4e-10 68.6 86 57.0
Peaxi162Scf00258g00225 Petunia axillaris HOM05D000184 ORTHO05D000032 8.4e-10 68.6 309 28.2
Lj1g0007211 Lotus japonicus HOM05D000184 ORTHO05D000032 1.1e-09 68.2 85 55.3
Medtr7g093030 Medicago truncatula HOM05D000184 ORTHO05D000032 1.1e-09 68.2 89 50.6
Sed0008968 Sechium edule HOM05D000184 ORTHO05D000032 1.1e-09 68.2 94 53.2
Nitab4.5_0011083g0010 Nicotiana tabacum HOM05D000184 ORTHO05D000032 1.4e-09 67.8 297 29.0
TWI74G1379 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 1.4e-09 67.8 357 28.3
Phvul.001G141600 Phaseolus vulgaris HOM05D000184 ORTHO05D000032 1.9e-09 67.4 92 53.3
Potri.016G047900 Populus trichocarpa HOM05D000184 ORTHO05D000032 2.4e-09 67.0 330 28.2
arahy.Tifrunner.gnm1.ann1.JN4NL9 Arachis hypogaea HOM05D000184 ORTHO05D000032 3.2e-09 66.6 83 44.6
BcaB05g21644 Brassica carinata HOM05D000184 ORTHO05D000032 3.2e-09 66.6 92 53.3
C02p02850 Brassica napus HOM05D000184 ORTHO05D000032 3.2e-09 66.6 92 53.3
BraA10t45000Z Brassica rapa HOM05D000184 ORTHO05D000032 3.2e-09 66.6 92 53.3
arahy.Tifrunner.gnm1.ann1.K7A0IJ Arachis hypogaea HOM05D000184 ORTHO05D000032 4.2e-09 66.2 83 44.6
FAN14G3489 Fragaria x ananassa HOM05D000184 ORTHO05D000032 5.4e-09 65.9 100 53.0
Nitab4.5_0000105g0020 Nicotiana tabacum HOM05D000184 ORTHO05D000032 7.1e-09 65.5 266 30.1
GSVIVG01033515001 Vitis vinifera HOM05D000184 ORTHO05D000032 7.1e-09 65.5 92 51.1
Os04g0665600 Oryza sativa ssp. japonica HOM05D000184 ORTHO05D000032 9.3e-09 65.1 86 53.5
MSTRG.17521 Avicennia marina HOM05D000184 ORTHO05D000032 1.2e-08 64.7 84 53.6
FAN14G2321 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.2e-08 64.7 330 28.8
Thecc.05G169800 Theobroma cacao HOM05D000184 ORTHO05D000032 1.2e-08 64.7 92 52.2
AL6G16910 Arabidopsis lyrata HOM05D000184 ORTHO05D000032 1.6e-08 64.3 83 56.6
MSTRG.18347 Avicennia marina HOM05D000184 ORTHO05D000032 1.6e-08 64.3 84 50.0
Eucgr.A02444 Eucalyptus grandis HOM05D000184 ORTHO05D000032 1.6e-08 64.3 85 54.1
Lalb_Chr15g0078941 Lupinus albus HOM05D000184 ORTHO05D000032 1.6e-08 64.3 89 49.4
PGR004G2577 Punica granatum HOM05D000184 ORTHO05D000032 1.6e-08 64.3 86 45.3
Carub.0006s0569 Capsella rubella HOM05D000184 ORTHO05D000032 2.7e-08 63.5 92 51.1
CiPaw.09G031600 Carya illinoinensis HOM05D000184 ORTHO05D000032 2.7e-08 63.5 382 26.2
Duzib128G0138 Durio zibethinus HOM05D000184 ORTHO05D000032 2.7e-08 63.5 92 52.2
Glyma.03G143600 Glycine max HOM05D000184 ORTHO05D000032 2.7e-08 63.5 69 50.7
Lsat_1_v5_gn_5_164281 Lactuca sativa HOM05D000184 ORTHO05D000032 2.7e-08 63.5 293 31.1
Nitab4.5_0000016g0360 Nicotiana tabacum HOM05D000184 ORTHO05D000032 2.7e-08 63.5 314 27.4
Atru.chr11.2690 Acer truncatum HOM05D000184 ORTHO05D000032 3.5e-08 63.2 84 52.4
BolC2t06250H Brassica oleracea HOM05D000184 ORTHO05D000032 3.5e-08 63.2 97 50.5
BraA02t04893Z Brassica rapa HOM05D000184 ORTHO05D000032 6.0e-08 62.4 92 51.1
Ca_12088_v3 Cicer arietinum L. HOM05D000184 ORTHO05D000032 6.0e-08 62.4 91 49.5
FvH4_6g22540 Fragaria vesca HOM05D000184 ORTHO05D000032 6.0e-08 62.4 91 52.7
HanXRQChr13g0389331 Helianthus annuus HOM05D000184 ORTHO05D000032 6.0e-08 62.4 94 53.2
Nn3g19758 Nelumbo nucifera HOM05D000184 ORTHO05D000032 6.0e-08 62.4 85 49.4
TWI53G0901 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 7.8e-08 62.0 89 51.7
FAN02G2304 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.0e-07 61.6 223 32.7
Thecc.05G169600 Theobroma cacao HOM05D023499 ORTHO05D025254 1.0e-07 61.6 77 49.4
Duzib133G0839 Durio zibethinus HOM05D000184 ORTHO05D000032 1.3e-07 61.2 82 47.6
Nitab4.5_0011083g0020 Nicotiana tabacum HOM05D023499 ORTHO05D029204 1.3e-07 61.2 66 53.0
Hund24789 Selenicereus undatus HOM05D000184 ORTHO05D000032 1.3e-07 61.2 92 53.3
VMungo0720G1481 Vigna mungo HOM05D000184 ORTHO05D000032 1.3e-07 61.2 373 27.1
SalBow6G5076 Salvia bowleyana HOM05D000184 ORTHO05D000032 1.7e-07 60.8 330 27.6
SalBow6G5514 Salvia bowleyana HOM05D000184 ORTHO05D000032 1.7e-07 60.8 330 27.6
Aa31LG8G17380 Aethionema arabicum HOM05D000184 ORTHO05D000032 2.3e-07 60.5 84 45.2
Gohir.A11G246200 Gossypium hirsutum HOM05D000184 ORTHO05D000032 2.3e-07 60.5 83 49.4
Gohir.D09G123400 Gossypium hirsutum HOM05D000184 ORTHO05D000032 2.3e-07 60.5 295 29.2
vmacro07931 Vaccinium macrocarpon HOM05D000184 ORTHO05D000032 2.3e-07 60.5 134 36.6
BcaB01g06021 Brassica carinata HOM05D000184 ORTHO05D000032 3.0e-07 60.1 92 50.0
A03p02890 Brassica napus HOM05D000184 ORTHO05D000032 3.0e-07 60.1 92 50.0
C03p03330 Brassica napus HOM05D000184 ORTHO05D000032 3.0e-07 60.1 92 50.0
FAN20G2179 Fragaria x ananassa HOM05D000184 ORTHO05D000032 3.0e-07 60.1 84 50.0
Glyma.19G146600 Glycine max HOM05D000184 ORTHO05D000032 3.0e-07 60.1 91 48.4
Lalb_Chr02g0152691 Lupinus albus HOM05D000184 ORTHO05D000032 3.0e-07 60.1 83 50.6
MD14G1059400 Malus domestica HOM05D000184 ORTHO05D000032 3.0e-07 60.1 91 51.6
Hund05478 Selenicereus undatus HOM05D000184 ORTHO05D000032 3.0e-07 60.1 88 53.4
Sabra02G0196200 Salix brachista HOM05D000184 ORTHO05D000032 3.9e-07 59.7 85 48.2
unitig_749.g14157 Utricularia gibba HOM05D000184 ORTHO05D000032 3.9e-07 59.7 92 52.2
Aqoxy1G03786 Aquilegia oxysepala HOM05D000184 ORTHO05D000032 5.1e-07 59.3 83 50.6
AT5G06800 Arabidopsis thaliana HOM05D000184 ORTHO05D000032 5.1e-07 59.3 94 51.1
Dinv24086 Davidia involucrata HOM05D025704 ORTHO05D025254 5.1e-07 59.3 50 74.0
HanXRQChr08g0224011 Helianthus annuus HOM05D000184 ORTHO05D000032 5.1e-07 59.3 84 44.0
HanXRQChr11g0321991 Helianthus annuus HOM05D000184 ORTHO05D000032 5.1e-07 59.3 84 44.0
HanXRQChr11g0322001 Helianthus annuus HOM05D000184 ORTHO05D000032 5.1e-07 59.3 84 44.0
Nn7g36033 Nelumbo nucifera HOM05D000184 ORTHO05D000032 5.1e-07 59.3 386 26.4
Rhsim01G0261200 Rhododendron simsii HOM05D000184 ORTHO05D000032 6.6e-07 58.9 85 48.2
SGA_v2.0_scaffold105G30482 Striga asiatica HOM05D023499 ORTHO05D029204 6.6e-07 58.9 211 33.2
TAR365G0252 Trochodendron aralioides HOM05D000184 ORTHO05D000032 6.6e-07 58.9 85 48.2
CAN.G128.36 Capsicum annuum HOM05D000184 ORTHO05D000032 8.7e-07 58.5 132 34.8
ClCG04G002100 Citrullus lanatus HOM05D000184 ORTHO05D000032 8.7e-07 58.5 359 25.6
ECA232G3826 Erigeron canadensis HOM05D000184 ORTHO05D000032 8.7e-07 58.5 87 44.8
Glyma.02G178100 Glycine max HOM05D000184 ORTHO05D000032 8.7e-07 58.5 89 49.4
HanXRQChr01g0009621 Helianthus annuus HOM05D000184 ORTHO05D000032 8.7e-07 58.5 94 51.1
Medtr1g053835 Medicago truncatula HOM05D000184 ORTHO05D000032 8.7e-07 58.5 91 48.4
Actinidia17266 Actinidia chinensis HOM05D000184 ORTHO05D000032 1.1e-06 58.2 85 49.4
Gohir.D11G256400 Gossypium hirsutum HOM05D000184 ORTHO05D000032 1.1e-06 58.2 83 48.2
Gorai.007G274700 Gossypium raimondii HOM05D000184 ORTHO05D000032 1.1e-06 58.2 83 48.2
Lsat_1_v5_gn_0_580 Lactuca sativa HOM05D000184 ORTHO05D000032 1.1e-06 58.2 84 44.0
Lalb_Chr18g0047791 Lupinus albus HOM05D000184 ORTHO05D000032 1.1e-06 58.2 89 49.4
Cpa.g.sc85.82 Carica papaya HOM05D000184 ORTHO05D000032 1.5e-06 57.8 61 49.2
Ah.04g152380 Amaranthus hybridus HOM05D000184 ORTHO05D000032 1.9e-06 57.4 92 48.9
C07p56350 Brassica napus HOM05D000184 ORTHO05D000032 1.9e-06 57.4 82 47.6
BolC7t46114H Brassica oleracea HOM05D000184 ORTHO05D000032 1.9e-06 57.4 82 47.6
Oeu051334.3 Olea europaea HOM05D000184 ORTHO05D000032 1.9e-06 57.4 81 40.7
Prupe.7G075200 Prunus persica HOM05D025704 ORTHO05D025254 1.9e-06 57.4 51 62.7
TPR.G24148 Trifolium pratense HOM05D000184 ORTHO05D000032 1.9e-06 57.4 89 48.3
VMungo1383G2112 Vigna mungo HOM05D000184 ORTHO05D000032 1.9e-06 57.4 91 47.3
arahy.Tifrunner.gnm1.ann1.MI35X1 Arachis hypogaea HOM05D000184 ORTHO05D000032 2.5e-06 57.0 321 28.0
Oeu019118.1 Olea europaea HOM05D000184 ORTHO05D000032 2.5e-06 57.0 91 39.6
Phvul.007G258700 Phaseolus vulgaris HOM05D000184 ORTHO05D000032 2.5e-06 57.0 384 26.8
Potri.016G048000 Populus trichocarpa HOM05D000184 ORTHO05D000032 2.5e-06 57.0 87 42.5
THA.LOC104804039 Tarenaya hassleriana HOM05D000184 ORTHO05D000032 2.5e-06 57.0 81 49.4
A01p09320 Brassica napus HOM05D000184 ORTHO05D000032 3.3e-06 56.6 82 51.2
Glyma.09G113000 Glycine max HOM05D000184 ORTHO05D000032 3.3e-06 56.6 288 29.5
Sp7g26590 Schrenkiella parvula HOM05D000184 ORTHO05D000032 3.3e-06 56.6 82 51.2
AL7G23930 Arabidopsis lyrata HOM05D000184 ORTHO05D000032 4.3e-06 56.2 82 50.0
AT4G28610 Arabidopsis thaliana HOM05D000184 ORTHO05D000032 4.3e-06 56.2 82 50.0
BcaC07g38349 Brassica carinata HOM05D000184 ORTHO05D000032 4.3e-06 56.2 82 51.2
A08p19970 Brassica napus HOM05D000184 ORTHO05D000032 4.3e-06 56.2 82 51.2
C08p10980 Brassica napus HOM05D000184 ORTHO05D000032 4.3e-06 56.2 82 51.2
BolC8t48771H Brassica oleracea HOM05D000184 ORTHO05D000032 4.3e-06 56.2 82 51.2
BraA08t33955Z Brassica rapa HOM05D000184 ORTHO05D000032 4.3e-06 56.2 82 51.2
Carub.0007s1204 Capsella rubella HOM05D000184 ORTHO05D000032 4.3e-06 56.2 82 51.2
Thhalv10013850m.g Eutrema salsugineum HOM05D000184 ORTHO05D000032 4.3e-06 56.2 92 47.8
Gohir.A11G132800 Gossypium hirsutum HOM05D000184 ORTHO05D000032 4.3e-06 56.2 82 47.6
Gohir.D11G138900 Gossypium hirsutum HOM05D000184 ORTHO05D000032 4.3e-06 56.2 82 47.6
Gorai.007G149100 Gossypium raimondii HOM05D000184 ORTHO05D000032 4.3e-06 56.2 82 47.6
MD00G1060900 Malus domestica HOM05D000184 ORTHO05D000032 4.3e-06 56.2 84 47.6
Manes.13G039350 Manihot esculenta HOM05D000184 ORTHO05D000032 4.3e-06 56.2 84 47.6
Gohir.A09G127200 Gossypium hirsutum HOM05D000184 ORTHO05D000032 5.6e-06 55.8 252 31.0
Lj5g0027124 Lotus japonicus HOM05D000184 ORTHO05D000032 5.6e-06 55.8 91 46.2
RcHm_v2.0_Chr3g0480031 Rosa chinensis HOM05D000184 ORTHO05D000032 5.6e-06 55.8 91 50.5
CSS0035819 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 7.3e-06 55.5 85 48.2
HanXRQChr05g0146701 Helianthus annuus HOM05D000184 ORTHO05D000032 7.3e-06 55.5 86 51.2
Medtr1g080330 Medicago truncatula HOM05D000184 ORTHO05D000032 7.3e-06 55.5 86 46.5
Nn1g02933 Nelumbo nucifera HOM05D000184 ORTHO05D000032 7.3e-06 55.5 86 47.7
CSS0026971 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 9.6e-06 55.1 85 48.2
Thhalv10025330m.g Eutrema salsugineum HOM05D000184 ORTHO05D000032 9.6e-06 55.1 82 51.2
FAN05G3548 Fragaria x ananassa HOM05D000184 ORTHO05D000032 9.6e-06 55.1 115 43.5
MBI04_g32788_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 9.6e-06 55.1 92 46.7
Manes.09G147400 Manihot esculenta HOM05D000184 ORTHO05D000032 9.6e-06 55.1 83 45.8
Solyc10g080460.2 Solanum lycopersicum HOM05D000184 ORTHO05D000032 9.6e-06 55.1 142 33.8
TWI18G0306 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 9.6e-06 55.1 84 50.0


User provided reference genes

Program Settings