Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 3.5e-29 131.0 67 100.0
DCAR_013586 Daucus carota HOM05D004166 ORTHO05D004992 5.8e-16 87.0 65 66.2
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.1e-10 68.6 66 54.5
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 4.8e-10 67.4 62 61.3
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 6.2e-10 67.0 66 60.6
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 6.2e-10 67.0 66 60.6
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 6.2e-10 67.0 70 61.4
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 1.1e-09 66.2 62 64.5
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.8e-09 65.5 64 59.4
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.8e-09 65.5 59 59.3
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.8e-09 65.5 59 59.3
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 4.0e-09 64.3 66 56.1
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 4.0e-09 64.3 62 59.7
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 5.3e-09 63.9 59 57.6
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 6.9e-09 63.5 62 56.5
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 6.9e-09 63.5 66 57.6
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.2e-08 62.8 62 58.1
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 1.2e-08 62.8 66 54.5
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 1.2e-08 62.8 66 54.5
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.5e-08 62.4 60 61.7
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.5e-08 62.4 60 61.7
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 1.5e-08 62.4 59 57.6
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 1.5e-08 62.4 70 60.0
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.5e-08 62.4 60 58.3
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.0e-08 62.0 59 59.3
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 2.0e-08 62.0 69 56.5
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 3.4e-08 61.2 62 58.1
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 4.5e-08 60.8 59 55.9
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.8e-08 60.5 59 57.6
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.8e-08 60.5 59 57.6
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 5.8e-08 60.5 64 56.2
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 7.6e-08 60.1 62 54.8
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 7.6e-08 60.1 62 53.2
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 7.6e-08 60.1 64 53.1
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 1.0e-07 59.7 66 57.6
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 1.0e-07 59.7 62 56.5
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.0e-07 59.7 66 54.5
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 1.3e-07 59.3 64 56.2
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 1.3e-07 59.3 66 53.0
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 1.3e-07 59.3 62 54.8
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 1.7e-07 58.9 62 50.0
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 1.7e-07 58.9 62 50.0
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.7e-07 58.9 61 55.7
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 2.2e-07 58.5 62 58.1
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 2.2e-07 58.5 62 54.8
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 2.9e-07 58.2 63 54.0
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 2.9e-07 58.2 61 55.7
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 3.8e-07 57.8 64 53.1
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 3.8e-07 57.8 64 53.1
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 3.8e-07 57.8 62 53.2
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 4.9e-07 57.4 61 57.4
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 4.9e-07 57.4 61 55.7
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 4.9e-07 57.4 61 55.7
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 4.9e-07 57.4 62 54.8
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 6.5e-07 57.0 61 54.1
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 6.5e-07 57.0 61 54.1
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 8.4e-07 56.6 64 51.6
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 8.4e-07 56.6 58 55.2
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 8.4e-07 56.6 61 52.5
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.1e-06 56.2 63 50.8
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 1.1e-06 56.2 61 54.1
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 1.1e-06 56.2 62 53.2
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 1.4e-06 55.8 62 53.2
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.9e-06 55.5 61 49.2
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.9e-06 55.5 61 50.8
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 2.5e-06 55.1 62 50.0
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 2.5e-06 55.1 62 50.0
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 2.5e-06 55.1 47 57.4
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 2.5e-06 55.1 61 52.5
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.5e-06 55.1 59 54.2
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 3.2e-06 54.7 61 47.5
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.2e-06 54.7 61 52.5
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 3.2e-06 54.7 59 55.9
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 4.2e-06 54.3 70 51.4
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 4.2e-06 54.3 67 53.7
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 4.2e-06 54.3 61 49.2
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 4.2e-06 54.3 62 48.4
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 4.2e-06 54.3 59 54.2
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 4.2e-06 54.3 70 51.4
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 5.5e-06 53.9 47 59.6
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 5.5e-06 53.9 61 50.8
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 5.5e-06 53.9 61 52.5
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 5.5e-06 53.9 55 56.4
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 5.5e-06 53.9 55 56.4
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 7.1e-06 53.5 64 45.3
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 7.1e-06 53.5 43 58.1
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 7.1e-06 53.5 61 52.5
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 9.3e-06 53.1 64 50.0
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 9.3e-06 53.1 64 50.0
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 9.3e-06 53.1 61 52.5
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 9.3e-06 53.1 61 47.5
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 9.3e-06 53.1 61 47.5
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 9.3e-06 53.1 61 47.5


User provided reference genes

Program Settings