Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016993 Daucus carota HOM05D004129 ORTHO05D005039 1.4e-162 576.2 289 100.0
DCAR_026918 Daucus carota HOM05D004129 ORTHO05D005039 1.2e-97 360.5 208 88.9
Oeu013188.2 Olea europaea HOM05D004129 ORTHO05D005039 1.0e-80 304.3 207 73.9
DCAR_002561 Daucus carota HOM05D004129 ORTHO05D005039 6.1e-78 295.0 207 72.0
Dinv19144 Davidia involucrata HOM05D004129 ORTHO05D005039 1.8e-77 293.5 205 73.7
MD16G1000300 Malus domestica HOM05D004129 ORTHO05D005039 1.8e-77 293.5 205 73.2
MD13G1007800 Malus domestica HOM05D004129 ORTHO05D005039 8.8e-77 291.2 205 72.2
DCAR_023435 Daucus carota HOM05D004129 ORTHO05D005039 1.1e-76 290.8 207 72.0
Dinv12053 Davidia involucrata HOM05D004129 ORTHO05D005039 1.1e-76 290.8 207 71.5
TWI53G0870 Tripterygium wilfordii HOM05D004129 ORTHO05D005039 1.5e-76 290.4 207 70.5
COL.COLO4_27668 Corchorus olitorius HOM05D004129 ORTHO05D005039 2.0e-76 290.0 214 70.6
TAR629G3493 Trochodendron aralioides HOM05D004129 ORTHO05D005039 2.0e-76 290.0 207 70.5
Actinidia04325 Actinidia chinensis HOM05D004129 ORTHO05D005039 2.6e-76 289.7 206 71.4
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 2.6e-76 289.7 207 71.5
Manes.15G115000 Manihot esculenta HOM05D004129 ORTHO05D005039 2.6e-76 289.7 207 70.0
Lj3C852T13 Lonicera japonica HOM05D004129 ORTHO05D005039 4.4e-76 288.9 207 72.5
HanXRQChr06g0175531 Helianthus annuus HOM05D004129 ORTHO05D005039 5.7e-76 288.5 207 72.0
Lsat_1_v5_gn_0_9261 Lactuca sativa HOM05D004129 ORTHO05D005039 5.7e-76 288.5 208 70.7
Cc11_g05060 Coffea canephora HOM05D004129 ORTHO05D005039 1.7e-75 287.0 207 70.0
QL03p043536 Quercus lobata HOM05D004129 ORTHO05D005039 1.7e-75 287.0 206 69.4
SalBow2G1340 Salvia bowleyana HOM05D004129 ORTHO05D005039 1.7e-75 287.0 207 70.5
C05p44800 Brassica napus HOM05D004129 ORTHO05D005039 2.8e-75 286.2 207 69.1
Cpa.g.sc63.4 Carica papaya HOM05D004129 ORTHO05D005039 2.8e-75 286.2 207 70.0
ECA246G4798 Erigeron canadensis HOM05D004129 ORTHO05D005039 2.8e-75 286.2 205 72.2
BraA05t21812Z Brassica rapa HOM05D004129 ORTHO05D005039 3.7e-75 285.8 207 69.1
BcaC05g28401 Brassica carinata HOM05D004129 ORTHO05D005039 6.3e-75 285.0 207 68.6
A05p29290 Brassica napus HOM05D004129 ORTHO05D005039 8.2e-75 284.6 207 68.6
Nn4g24922 Nelumbo nucifera HOM05D004129 ORTHO05D005039 8.2e-75 284.6 202 71.3
BolC5t33206H Brassica oleracea HOM05D004129 ORTHO05D005039 1.4e-74 283.9 207 68.6
Manes.03G081000 Manihot esculenta HOM05D004129 ORTHO05D005039 1.4e-74 283.9 207 70.0
TAR289G0001 Trochodendron aralioides HOM05D004129 ORTHO05D005039 1.8e-74 283.5 212 68.4
Aqoxy3G04279 Aquilegia oxysepala HOM05D004129 ORTHO05D005039 2.4e-74 283.1 207 68.6
Thhalv10020191m.g Eutrema salsugineum HOM05D004129 ORTHO05D005039 4.1e-74 282.3 207 67.1
Glyma.12G028200 Glycine max HOM05D004129 ORTHO05D005039 4.1e-74 282.3 207 70.0
BcaB06g26052 Brassica carinata HOM05D004129 ORTHO05D005039 5.3e-74 282.0 207 67.6
Glyma.11G103300 Glycine max HOM05D004129 ORTHO05D005039 5.3e-74 282.0 207 70.0
AL3G33340 Arabidopsis lyrata HOM05D004129 ORTHO05D005039 7.0e-74 281.6 207 67.6
AT3G19830 Arabidopsis thaliana HOM05D004129 ORTHO05D005039 7.0e-74 281.6 207 67.6
PGR044G1594 Punica granatum HOM05D004129 ORTHO05D005039 9.1e-74 281.2 203 72.9
CARHR095340 Cardamine hirsuta HOM05D004129 ORTHO05D005039 1.2e-73 280.8 211 67.3
Sp3g17840 Schrenkiella parvula HOM05D004129 ORTHO05D005039 1.2e-73 280.8 207 67.1
Atru.chr11.1230 Acer truncatum HOM05D004129 ORTHO05D005039 1.5e-73 280.4 207 70.0
Atru.chr11.1318 Acer truncatum HOM05D004129 ORTHO05D005039 1.5e-73 280.4 207 70.0
Lsat_1_v5_gn_8_33460 Lactuca sativa HOM05D004129 ORTHO05D005039 1.5e-73 280.4 205 73.2
Carub.0003s1971 Capsella rubella HOM05D004129 ORTHO05D005039 2.0e-73 280.0 207 67.6
VMungo1127G0270 Vigna mungo HOM05D004129 ORTHO05D005039 2.0e-73 280.0 207 70.0
arahy.Tifrunner.gnm1.ann1.H8RGTW Arachis hypogaea HOM05D004129 ORTHO05D005039 2.6e-73 279.6 207 70.0
ClCG11G013250 Citrullus lanatus HOM05D004129 ORTHO05D005039 2.6e-73 279.6 205 69.3
CANSAT64G2478 Cannabis sativa HOM05D004129 ORTHO05D005039 3.5e-73 279.3 212 70.3
Prupe.1G345200 Prunus persica HOM05D004129 ORTHO05D005039 3.5e-73 279.3 190 74.2
RcHm_v2.0_Chr4g0446431 Rosa chinensis HOM05D004129 ORTHO05D005039 3.5e-73 279.3 205 70.7
CiPaw.05G166800 Carya illinoinensis HOM05D004129 ORTHO05D005039 4.5e-73 278.9 210 69.5
HanXRQChr13g0392741 Helianthus annuus HOM05D004129 ORTHO05D005039 4.5e-73 278.9 207 69.6
unitig_26.g10582 Utricularia gibba HOM05D004129 ORTHO05D005039 4.5e-73 278.9 219 65.3
Duzib251G0497 Durio zibethinus HOM05D004129 ORTHO05D005039 5.9e-73 278.5 208 70.2
Eucgr.J00849 Eucalyptus grandis HOM05D004129 ORTHO05D005039 5.9e-73 278.5 205 69.8
ECA233G0693 Erigeron canadensis HOM05D004129 ORTHO05D005039 1.0e-72 277.7 205 70.7
FAN12G0359 Fragaria x ananassa HOM05D004129 ORTHO05D005039 1.0e-72 277.7 211 68.2
FAN17G2102 Fragaria x ananassa HOM05D004129 ORTHO05D005039 1.0e-72 277.7 207 69.6
Lj3g0016150 Lotus japonicus HOM05D004129 ORTHO05D005039 1.0e-72 277.7 207 69.6
Sed0014097 Sechium edule HOM05D004129 ORTHO05D005039 1.0e-72 277.7 205 69.3
ATR0618G227 Amborella trichopoda HOM05D004129 ORTHO05D005039 1.3e-72 277.3 207 66.2
AL1G57850 Arabidopsis lyrata HOM05D004129 ORTHO05D005039 1.3e-72 277.3 207 67.1
MSTRG.2047 Avicennia marina HOM05D004129 ORTHO05D005039 1.7e-72 276.9 204 69.1
MELO3C011818.2 Cucumis melo HOM05D004129 ORTHO05D005039 2.2e-72 276.6 205 69.3
Duzib248G1331 Durio zibethinus HOM05D004129 ORTHO05D005039 2.2e-72 276.6 208 68.8
FvH4_4g36720 Fragaria vesca HOM05D004129 ORTHO05D005039 2.9e-72 276.2 207 69.1
FAN07G0638 Fragaria x ananassa HOM05D004129 ORTHO05D005039 2.9e-72 276.2 207 69.1
Peaxi162Scf00329g00816 Petunia axillaris HOM05D004129 ORTHO05D005039 2.9e-72 276.2 219 66.2
GSVIVG01010208001 Vitis vinifera HOM05D004129 ORTHO05D005039 2.9e-72 276.2 207 69.6
Phvul.011G031600 Phaseolus vulgaris HOM05D004129 ORTHO05D005039 5.0e-72 275.4 207 69.6
CARHR040320 Cardamine hirsuta HOM05D004129 ORTHO05D005039 6.5e-72 275.0 206 67.0
Oeu063830.2 Olea europaea HOM05D004129 ORTHO05D005039 6.5e-72 275.0 208 69.2
Aa31LG8G6600 Aethionema arabicum HOM05D004129 ORTHO05D005039 8.5e-72 274.6 210 66.2
CsaV3_5G029760 Cucumis sativus L. HOM05D004129 ORTHO05D005039 1.1e-71 274.2 205 68.8
Gohir.D12G158900 Gossypium hirsutum HOM05D004129 ORTHO05D005039 2.5e-71 273.1 208 68.8
Gorai.008G172000 Gossypium raimondii HOM05D004129 ORTHO05D005039 2.5e-71 273.1 208 68.8
Thecc.02G311300 Theobroma cacao HOM05D004129 ORTHO05D005039 2.5e-71 273.1 208 67.3
Potri.010G170300 Populus trichocarpa HOM05D004129 ORTHO05D005039 5.5e-71 271.9 207 68.6
Gohir.A12G155800 Gossypium hirsutum HOM05D004129 ORTHO05D005039 7.2e-71 271.6 208 68.3
Nitab4.5_0010895g0010 Nicotiana tabacum HOM05D004129 ORTHO05D005039 7.2e-71 271.6 219 65.8
Gohir.A13G026200 Gossypium hirsutum HOM05D004129 ORTHO05D005039 9.4e-71 271.2 208 68.3
Gorai.013G028000 Gossypium raimondii HOM05D004129 ORTHO05D005039 9.4e-71 271.2 208 68.3
Lalb_Chr03g0024871 Lupinus albus HOM05D004129 ORTHO05D005039 9.4e-71 271.2 203 70.0
Sc06g0007840 Simmondsia chinensis HOM05D004129 ORTHO05D005039 1.2e-70 270.8 204 66.7
Ciclev10030903m.g Citrus clementina HOM05D004129 ORTHO05D005039 1.6e-70 270.4 205 68.3
Potri.008G085000 Populus trichocarpa HOM05D004129 ORTHO05D005039 3.6e-70 269.2 207 68.1
CDE05G3231 Ceratophyllum demersum HOM05D004129 ORTHO05D005039 4.7e-70 268.9 207 68.6
Gohir.D13G024800 Gossypium hirsutum HOM05D004129 ORTHO05D005039 6.1e-70 268.5 208 67.8
Nitab4.5_0000129g0330 Nicotiana tabacum HOM05D004129 ORTHO05D005039 6.1e-70 268.5 214 66.4
MBI06_g04642_MAGBIO Magnolia biondii HOM05D004129 ORTHO05D005039 8.0e-70 268.1 192 68.8
TPR.G21557 Trifolium pratense HOM05D004129 ORTHO05D005039 8.0e-70 268.1 212 67.5
CiPaw.06G057400 Carya illinoinensis HOM05D004129 ORTHO05D005039 1.0e-69 267.7 206 66.0
Carub.0001s3937 Capsella rubella HOM05D004129 ORTHO05D005039 1.4e-69 267.3 207 63.8
Sp1g37110 Schrenkiella parvula HOM05D004129 ORTHO05D005039 1.8e-69 266.9 207 65.7
AT1G50260 Arabidopsis thaliana HOM05D004129 ORTHO05D005039 2.3e-69 266.5 207 65.7
CDE05G0311 Ceratophyllum demersum HOM05D004129 ORTHO05D005039 2.3e-69 266.5 207 67.6
Migut.E00709 Erythranthe guttata HOM05D004129 ORTHO05D005039 2.3e-69 266.5 191 71.2
MBI03_g33917_MAGBIO Magnolia biondii HOM05D004129 ORTHO05D005039 2.3e-69 266.5 205 65.9
Duzib268G0017 Durio zibethinus HOM05D004129 ORTHO05D005039 5.2e-69 265.4 209 65.1
AUR62015200 Chenopodium quinoa HOM05D004129 ORTHO05D005039 8.8e-69 264.6 205 65.9
TWI74G0501 Tripterygium wilfordii HOM05D004129 ORTHO05D005039 8.8e-69 264.6 202 67.8
unitig_22.g6366 Utricularia gibba HOM05D004129 ORTHO05D005039 1.5e-68 263.8 207 64.7
Solyc04g008620.3 Solanum lycopersicum HOM05D004129 ORTHO05D005039 2.6e-68 263.1 213 66.2
AUR62017663 Chenopodium quinoa HOM05D004129 ORTHO05D005039 5.7e-68 261.9 205 66.3
Sopen04g003780 Solanum pennellii HOM05D004129 ORTHO05D005039 1.3e-67 260.8 213 65.7
CAN.G194.12 Capsicum annuum HOM05D004129 ORTHO05D005039 1.7e-67 260.4 215 64.7
PSO017G6615 Papaver somniferum HOM05D004129 ORTHO05D005039 2.2e-67 260.0 206 66.0
PGSC0003DMG400031377 Solanum tuberosum HOM05D004129 ORTHO05D005039 2.2e-67 260.0 213 64.8
EL10Ac9g22919 Beta vulgaris HOM05D004129 ORTHO05D005039 3.7e-67 259.2 204 64.2
Lalb_Chr01g0001521 Lupinus albus HOM05D004129 ORTHO05D005039 7.0e-66 255.0 207 63.8
Rhsim09G0078200 Rhododendron simsii HOM05D004129 ORTHO05D005039 9.1e-66 254.6 222 62.2
vmacro10792 Vaccinium macrocarpon HOM05D004129 ORTHO05D005039 9.1e-66 254.6 219 62.6
Sabra10G0130000 Salix brachista HOM05D004129 ORTHO05D005039 2.0e-65 253.4 239 59.0
Psat5g196000 Pisum sativum HOM05D004129 ORTHO05D005039 7.7e-65 251.5 212 65.1
CDE04G0459 Ceratophyllum demersum HOM05D004129 ORTHO05D005039 1.0e-64 251.1 205 62.9
Ca_03034_v3 Cicer arietinum L. HOM05D004129 ORTHO05D005039 1.3e-64 250.8 202 66.3
Zm00001eb190700 Zea mays HOM05D004129 ORTHO05D005039 3.8e-64 249.2 216 62.0
Os02g0829200 Oryza sativa ssp. japonica HOM05D004129 ORTHO05D005039 2.1e-62 243.4 222 58.6
Medtr4g108040 Medicago truncatula HOM05D004129 ORTHO05D005039 6.8e-61 238.4 220 62.7
Medtr4g074370 Medicago truncatula HOM05D004129 ORTHO05D005039 1.2e-60 237.7 219 63.0
SGA_v2.0_scaffold114G31802 Striga asiatica HOM05D004129 ORTHO05D005039 1.5e-60 237.3 334 44.0
HPP92_002495 Vanilla planifolia HOM05D004129 ORTHO05D005039 2.0e-60 236.9 205 62.0
Ah.01g001650 Amaranthus hybridus HOM05D004129 ORTHO05D005039 4.1e-58 229.2 252 49.6
Psat5g190480 Pisum sativum HOM05D004129 ORTHO05D005039 4.1e-58 229.2 212 61.8
HPP92_002539 Vanilla planifolia HOM05D004129 ORTHO05D005039 2.7e-57 226.5 205 60.0
SMO358G0042 Selaginella moellendorffii HOM05D004129 ORTHO05D005039 1.5e-52 210.7 196 58.2
Lalb_Chr19g0139331 Lupinus albus HOM05D004129 ORTHO05D005039 2.0e-52 210.3 166 66.9
Mapoly0004s0137 Marchantia polymorpha HOM05D004129 ORTHO05D005039 9.5e-47 191.4 191 49.7
Pp3c2_31020 Physcomitrium patens HOM05D004129 ORTHO05D005039 4.7e-46 189.1 189 50.8
Psat5g190320 Pisum sativum HOM05D004129 ORTHO05D005039 4.0e-45 186.0 139 69.8
AagrBONN_evm.TU.Sc2ySwM_228.3305 Anthoceros agrestis HOM05D004129 ORTHO05D005039 6.8e-37 158.7 126 59.5
Psat5g177280 Pisum sativum HOM05D004129 ORTHO05D005039 1.7e-35 154.1 127 63.8
DCAR_025336 Daucus carota HOM05D004129 ORTHO05D005039 6.4e-35 152.1 80 92.5
BraA01t03575Z Brassica rapa HOM05D004129 ORTHO05D005039 1.6e-33 147.5 262 38.9
A01p34920 Brassica napus HOM05D004129 ORTHO05D005039 1.9e-31 140.6 270 37.4
BolC1t04398H Brassica oleracea HOM05D004129 ORTHO05D005039 2.5e-31 140.2 142 54.9
C01p44330 Brassica napus HOM05D004129 ORTHO05D005039 4.0e-29 132.9 142 52.8
Psat5g195720 Pisum sativum HOM05D004129 ORTHO05D005039 4.1e-26 122.9 107 59.8
Pp3c25_6480 Physcomitrium patens HOM05D004129 ORTHO05D005039 2.1e-22 110.5 221 34.8
CBR_g19924 Chara braunii HOM05D004129 ORTHO05D005039 8.1e-22 108.6 203 35.0
Pp3c16_7780 Physcomitrium patens HOM05D004129 ORTHO05D005039 8.1e-22 108.6 257 34.2
Psat5g195840 Pisum sativum HOM05D004129 ORTHO05D005039 1.4e-21 107.8 99 58.6
Psat5g177440 Pisum sativum HOM05D004129 ORTHO05D005039 5.8e-20 102.4 107 53.3
Ah.01g012960 Amaranthus hybridus HOM05D004129 ORTHO05D005039 7.6e-20 102.1 69 75.4
Mapoly0095s0004 Marchantia polymorpha HOM05D004129 ORTHO05D005039 9.9e-20 101.7 202 37.1
MSTRG.2049 Avicennia marina HOM05D004129 ORTHO05D005039 1.7e-16 90.9 67 68.7
Psat5g195800 Pisum sativum HOM05D004129 ORTHO05D005039 5.1e-16 89.4 80 63.8
HPP92_002511 Vanilla planifolia HOM05D004129 ORTHO05D005039 1.1e-15 88.2 93 52.7
SEGI_10176 Sequoiadendron giganteum HOM05D004129 ORTHO05D005039 4.3e-15 86.3 78 53.8
SEGI_01347 Sequoiadendron giganteum HOM05D004129 ORTHO05D005039 4.7e-14 82.8 67 59.7
MBI06_g28846_MAGBIO Magnolia biondii HOM05D004129 ORTHO05D005039 1.8e-13 80.9 67 62.7
Cre02.g074900 Chlamydomonas reinhardtii HOM05D004129 ORTHO05D005039 2.0e-12 77.4 155 33.5
MBI03_g24011_MAGBIO Magnolia biondii HOM05D004129 ORTHO05D005039 6.0e-09 65.9 37 78.4
PRCOL_00003667 Prasinoderma coloniale HOM05D004129 ORTHO05D005039 1.3e-08 64.7 212 26.4
COL.COLO4_26125 Corchorus olitorius HOM05D000524 ORTHO05D000381 8.1e-06 55.5 204 26.0


User provided reference genes

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