Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 9.0e-79 297.0 162 100.0
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.2e-32 142.9 87 72.4
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 3.7e-32 142.1 90 71.1
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 3.7e-32 142.1 121 57.0
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 6.3e-32 141.4 110 60.0
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 1.1e-31 140.6 92 67.4
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 1.4e-31 140.2 92 69.6
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 1.8e-31 139.8 78 78.2
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 3.1e-31 139.0 95 67.4
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 3.1e-31 139.0 73 84.9
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 5.3e-31 138.3 78 78.2
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 7.0e-31 137.9 88 71.6
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 9.1e-31 137.5 77 79.2
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 1.6e-30 136.7 73 82.2
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.6e-30 136.7 84 72.6
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 2.0e-30 136.3 82 73.2
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 2.0e-30 136.3 73 80.8
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 2.6e-30 136.0 73 82.2
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 3.5e-30 135.6 105 61.9
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 7.7e-30 134.4 73 82.2
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.0e-29 134.0 89 71.9
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 1.0e-29 134.0 73 80.8
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 1.3e-29 133.7 92 65.2
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 1.3e-29 133.7 82 73.2
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 1.7e-29 133.3 72 80.6
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 2.2e-29 132.9 72 81.9
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 2.9e-29 132.5 78 73.1
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 6.5e-29 131.3 91 65.9
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 6.5e-29 131.3 88 65.9
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 6.5e-29 131.3 73 78.1
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 8.5e-29 131.0 125 52.8
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 1.1e-28 130.6 85 69.4
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 1.5e-28 130.2 83 69.9
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.5e-28 130.2 72 76.4
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 1.9e-28 129.8 74 78.4
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.9e-28 129.8 73 76.7
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 2.5e-28 129.4 141 48.9
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 2.5e-28 129.4 88 65.9
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 2.5e-28 129.4 88 65.9
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 2.5e-28 129.4 105 58.1
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 4.2e-28 128.6 88 63.6
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 4.2e-28 128.6 88 63.6
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 4.2e-28 128.6 88 63.6
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 4.2e-28 128.6 88 63.6
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 5.5e-28 128.3 85 69.4
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 5.5e-28 128.3 73 75.3
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 7.2e-28 127.9 88 63.6
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 7.2e-28 127.9 70 78.6
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 9.4e-28 127.5 73 76.7
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 9.4e-28 127.5 73 78.1
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 9.4e-28 127.5 73 78.1
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.2e-27 127.1 71 78.9
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 1.6e-27 126.7 67 83.6
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 2.1e-27 126.3 70 80.0
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 2.1e-27 126.3 74 75.7
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 2.1e-27 126.3 85 67.1
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 2.7e-27 125.9 108 57.4
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 3.6e-27 125.6 82 69.5
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 3.6e-27 125.6 73 76.7
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 3.6e-27 125.6 87 67.8
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 4.7e-27 125.2 69 81.2
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 4.7e-27 125.2 80 72.5
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 4.7e-27 125.2 105 61.0
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 1.0e-26 124.0 69 79.7
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 1.0e-26 124.0 83 66.3
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 1.0e-26 124.0 87 63.2
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 1.0e-26 124.0 121 48.8
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.4e-26 123.6 69 81.2
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 1.8e-26 123.2 73 74.0
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 2.3e-26 122.9 79 69.6
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 2.3e-26 122.9 82 69.5
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 2.3e-26 122.9 81 69.1
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 3.0e-26 122.5 69 81.2
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 3.0e-26 122.5 69 81.2
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 3.0e-26 122.5 87 66.7
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 3.0e-26 122.5 69 78.3
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 3.0e-26 122.5 68 77.9
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 4.0e-26 122.1 71 74.6
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 4.0e-26 122.1 68 80.9
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 4.0e-26 122.1 68 76.5
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 4.0e-26 122.1 68 79.4
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 4.0e-26 122.1 73 74.0
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 4.0e-26 122.1 121 47.9
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 5.2e-26 121.7 68 80.9
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 5.2e-26 121.7 81 67.9
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 5.2e-26 121.7 82 68.3
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 6.7e-26 121.3 78 73.1
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 6.7e-26 121.3 85 65.9
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 6.7e-26 121.3 79 67.1
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 8.8e-26 120.9 68 76.5
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 1.1e-25 120.6 82 67.1
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 1.1e-25 120.6 81 70.4
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 1.1e-25 120.6 83 65.1
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 1.5e-25 120.2 69 78.3
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 2.6e-25 119.4 68 77.9
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 2.6e-25 119.4 81 66.7
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 3.3e-25 119.0 68 77.9
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 4.4e-25 118.6 71 73.2
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 5.7e-25 118.2 81 66.7
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 9.7e-25 117.5 74 74.3
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 1.7e-24 116.7 71 74.6
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 1.7e-24 116.7 70 75.7
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 4.8e-24 115.2 71 73.2
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 6.3e-24 114.8 106 53.8
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 1.8e-23 113.2 83 61.4
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 5.3e-23 111.7 68 73.5
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 1.2e-22 110.5 73 68.5
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 1.6e-22 110.2 82 56.1
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 2.0e-22 109.8 68 64.7
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 2.0e-22 109.8 71 70.4
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 2.7e-22 109.4 77 64.9
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 3.5e-22 109.0 106 52.8
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 5.9e-22 108.2 68 67.6
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 7.7e-22 107.8 68 66.2
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 7.7e-22 107.8 68 75.0
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 6.5e-21 104.8 62 74.2
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 6.1e-19 98.2 79 58.2
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 6.1e-19 98.2 79 58.2
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 3.7e-16 89.0 138 42.8
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 8.3e-16 87.8 63 60.3
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 8.3e-16 87.8 69 56.5
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 2.4e-15 86.3 50 74.0
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 3.1e-15 85.9 97 44.3
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 3.1e-15 85.9 97 44.3
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 2.0e-14 83.2 78 57.7
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 1.7e-13 80.1 110 40.9
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 2.9e-13 79.3 67 56.7
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 5.0e-13 78.6 59 59.3
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 5.0e-13 78.6 59 59.3
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 6.5e-13 78.2 44 77.3
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 1.9e-12 76.6 50 64.0
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 9.5e-12 74.3 48 62.5
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 2.8e-08 62.8 39 66.7


User provided reference genes

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