Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 1.6e-238 828.9 404 100.0
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 8.3e-158 560.8 386 70.7
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 3.0e-155 552.4 398 68.6
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 6.2e-153 544.7 384 70.8
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 5.2e-152 541.6 357 73.9
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 8.9e-152 540.8 382 69.4
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 3.7e-150 535.4 396 66.9
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 1.4e-149 533.5 383 66.6
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.9e-149 533.1 383 67.9
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 3.2e-149 532.3 388 66.2
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 1.2e-148 530.4 406 63.5
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 5.0e-147 525.0 381 65.6
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 8.6e-147 524.2 393 64.1
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 7.3e-146 521.2 371 66.6
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 7.3e-146 521.2 371 66.6
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.6e-145 520.0 371 66.3
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 2.8e-145 519.2 384 66.1
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 6.2e-145 518.1 377 67.6
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.4e-144 516.9 385 67.0
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 1.8e-144 516.5 385 64.4
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 2.3e-144 516.2 371 66.0
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 3.1e-144 515.8 400 64.2
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 1.5e-143 513.5 382 65.7
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 3.4e-143 512.3 380 63.9
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 4.4e-143 511.9 386 64.2
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 2.2e-142 509.6 385 63.1
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 2.2e-142 509.6 428 59.8
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 3.7e-142 508.8 383 62.9
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 4.9e-142 508.4 382 64.9
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 1.4e-141 506.9 380 63.4
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.9e-141 506.5 393 62.3
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 1.9e-141 506.5 354 69.8
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 1.9e-141 506.5 390 64.1
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 3.2e-141 505.8 398 62.8
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 3.2e-141 505.8 385 64.4
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 4.1e-141 505.4 343 70.8
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 4.1e-141 505.4 391 63.4
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 7.1e-141 504.6 385 64.7
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 9.2e-141 504.2 357 66.4
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 9.2e-141 504.2 378 63.5
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.2e-140 503.8 377 62.9
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.6e-140 503.4 380 63.7
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 3.5e-140 502.3 370 65.9
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 6.0e-140 501.5 395 62.3
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 7.8e-140 501.1 383 64.8
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 2.3e-139 499.6 344 68.9
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 3.0e-139 499.2 386 62.4
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 5.1e-139 498.4 350 70.3
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 5.1e-139 498.4 382 62.6
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 8.6e-139 497.7 380 62.6
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 1.1e-138 497.3 391 61.9
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 1.5e-138 496.9 375 63.2
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 1.9e-138 496.5 392 63.5
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 1.9e-138 496.5 386 63.7
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 4.3e-138 495.4 385 62.1
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 7.3e-138 494.6 384 62.8
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 9.5e-138 494.2 380 62.1
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.2e-137 493.8 386 62.2
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 1.6e-137 493.4 384 62.2
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 1.6e-137 493.4 359 65.7
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 3.6e-137 492.3 380 61.8
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 3.6e-137 492.3 398 60.3
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 4.7e-137 491.9 386 61.7
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 6.2e-137 491.5 398 61.1
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 1.4e-136 490.3 386 61.4
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 1.8e-136 490.0 394 62.4
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 1.8e-136 490.0 387 62.3
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 1.8e-136 490.0 387 62.3
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 2.4e-136 489.6 369 63.4
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 5.2e-136 488.4 400 60.8
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 1.2e-135 487.3 388 62.4
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 1.5e-135 486.9 388 61.6
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 2.0e-135 486.5 342 66.7
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 2.0e-135 486.5 382 63.6
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 2.6e-135 486.1 388 61.3
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 5.8e-135 485.0 356 65.7
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 9.9e-135 484.2 384 61.7
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 1.3e-134 483.8 382 63.1
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 1.3e-134 483.8 418 59.1
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 1.7e-134 483.4 384 62.5
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 6.4e-134 481.5 377 63.1
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 8.4e-134 481.1 381 60.6
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 2.4e-133 479.6 374 63.6
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 2.4e-133 479.6 391 62.7
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 3.2e-133 479.2 358 64.5
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 1.3e-131 473.8 385 60.0
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 3.9e-131 472.2 338 66.0
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 3.9e-131 472.2 380 62.1
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 1.1e-130 470.7 397 59.4
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 4.3e-130 468.8 412 58.3
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 1.6e-129 466.8 397 59.2
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 2.8e-129 466.1 398 58.3
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 6.2e-129 464.9 384 60.4
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 3.1e-128 462.6 392 61.2
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 4.0e-128 462.2 362 62.7
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 6.9e-128 461.5 363 61.4
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 1.5e-127 460.3 342 65.2
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 9.6e-122 441.0 433 53.1
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 1.4e-120 437.2 329 64.1
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 4.6e-116 422.2 295 67.8
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 3.3e-114 416.0 338 59.5
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 4.3e-114 415.6 377 55.7
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 2.1e-113 413.3 385 54.3
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.8e-113 412.9 338 58.9
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 4.8e-113 412.1 383 55.9
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 2.4e-112 409.8 287 67.2
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.0e-111 406.8 343 57.1
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 2.9e-110 402.9 380 56.6
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 4.9e-110 402.1 369 54.2
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.2e-108 397.5 259 73.7
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 2.3e-107 393.3 375 56.0
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 5.1e-107 392.1 286 68.5
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 4.3e-106 389.0 305 60.7
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 6.3e-97 358.6 385 49.1
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 2.1e-92 343.6 224 68.8
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 1.5e-90 337.4 275 61.5
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 2.4e-88 330.1 301 54.5
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 5.9e-87 325.5 304 52.0
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.5e-79 300.8 215 66.5
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 1.9e-77 293.9 278 52.5
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 6.1e-76 288.9 330 43.9
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 1.9e-61 240.7 168 66.1
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 2.3e-59 233.8 237 54.4
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 6.8e-59 232.3 309 42.1
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.0e-54 218.4 233 47.2
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 9.5e-53 211.8 195 52.8
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.4e-50 203.0 120 75.8
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 1.6e-47 194.5 137 61.3
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 4.5e-47 193.0 145 69.0
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 3.8e-46 189.9 187 52.4
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.4e-40 171.4 123 59.3
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 1.9e-37 161.0 140 50.7
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 5.8e-34 149.4 179 45.8
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 1.7e-33 147.9 163 53.4
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 2.4e-24 117.5 150 46.7
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 8.6e-22 109.0 130 50.0
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 4.3e-21 106.7 390 26.9
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 6.2e-20 102.8 63 69.8
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 2.7e-15 87.4 52 69.2
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 3.0e-14 84.0 58 69.0
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 8.7e-14 82.4 256 27.7
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.1e-12 77.8 54 64.8
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 2.6e-10 70.9 81 45.7
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 4.4e-10 70.1 51 64.7
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 3.2e-08 63.9 76 40.8
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 3.2e-08 63.9 76 40.8


User provided reference genes

Program Settings