Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016688 Daucus carota HOM05D001542 ORTHO05D001416 6.3e-58 227.3 117 100.0
TWI77G0473 Tripterygium wilfordii HOM05D001542 ORTHO05D001416 3.3e-22 108.6 111 55.0
Oeu032323.1 Olea europaea HOM05D001542 ORTHO05D001416 3.6e-21 105.1 113 54.0
Haze_14255 Corylus avellana HOM05D001542 ORTHO05D001416 6.2e-21 104.4 111 52.3
MD00G1116700 Malus domestica HOM05D001542 ORTHO05D001416 6.2e-21 104.4 112 55.4
TAR622G0179 Trochodendron aralioides HOM05D001542 ORTHO05D001416 1.4e-20 103.2 113 54.0
Dinv28202 Davidia involucrata HOM05D001542 ORTHO05D001416 1.8e-20 102.8 117 53.0
TAR371G1164 Trochodendron aralioides HOM05D001542 ORTHO05D001416 2.3e-20 102.4 109 56.0
Actinidia17211 Actinidia chinensis HOM05D001542 ORTHO05D001416 3.1e-20 102.1 115 51.3
Nitab4.5_0004679g0090 Nicotiana tabacum HOM05D001542 ORTHO05D001416 3.1e-20 102.1 111 53.2
Prupe.3G016400 Prunus persica HOM05D001542 ORTHO05D001416 3.4e-19 98.6 112 50.0
Nitab4.5_0007567g0010 Nicotiana tabacum HOM05D001542 ORTHO05D001416 5.8e-19 97.8 111 51.4
COL.COLO4_05991 Corchorus olitorius HOM05D001542 ORTHO05D001416 7.5e-19 97.4 114 53.5
PGSC0003DMG400014604 Solanum tuberosum HOM05D001542 ORTHO05D001416 7.5e-19 97.4 112 49.1
FvH4_1g30350 Fragaria vesca HOM05D001542 ORTHO05D001416 9.8e-19 97.1 111 48.6
FAN23G0274 Fragaria x ananassa HOM05D001542 ORTHO05D001416 9.8e-19 97.1 111 48.6
Lj4A263T81 Lonicera japonica HOM05D001542 ORTHO05D001416 9.8e-19 97.1 112 46.4
Cc07_g13440 Coffea canephora HOM05D001542 ORTHO05D001416 1.3e-18 96.7 118 48.3
Sopen05g029660 Solanum pennellii HOM05D001542 ORTHO05D001416 1.3e-18 96.7 112 47.3
FAN19G0105 Fragaria x ananassa HOM05D001542 ORTHO05D001416 2.2e-18 95.9 111 47.7
FAN26G3007 Fragaria x ananassa HOM05D001542 ORTHO05D001416 3.7e-18 95.1 108 50.9
FAN28G2484 Fragaria x ananassa HOM05D001542 ORTHO05D001416 4.9e-18 94.7 114 46.5
Nn3g18306 Nelumbo nucifera HOM05D001542 ORTHO05D001416 4.9e-18 94.7 111 50.5
CSS0003427 Camellia sinensis var. sinensis HOM05D001542 ORTHO05D001416 6.4e-18 94.4 115 52.2
Ciclev10011712m.g Citrus clementina HOM05D001542 ORTHO05D001416 8.3e-18 94.0 111 47.7
Atru.chr1.1928 Acer truncatum HOM05D001542 ORTHO05D001416 1.1e-17 93.6 108 48.1
PGR004G1750 Punica granatum HOM05D001542 ORTHO05D001416 1.1e-17 93.6 120 50.0
GSVIVG01030786001 Vitis vinifera HOM05D001542 ORTHO05D001416 1.1e-17 93.6 112 47.3
Rhsim08G0018600 Rhododendron simsii HOM05D001542 ORTHO05D001416 2.4e-17 92.4 112 50.0
Solyc05g051280.3 Solanum lycopersicum HOM05D001542 ORTHO05D001416 3.2e-17 92.0 112 46.4
Lj2A521T74 Lonicera japonica HOM05D001542 ORTHO05D001416 4.1e-17 91.7 114 45.6
CiPaw.03G072000 Carya illinoinensis HOM05D001542 ORTHO05D001416 5.4e-17 91.3 106 48.1
MELO3C020223.2 Cucumis melo HOM05D001542 ORTHO05D001416 5.4e-17 91.3 115 48.7
CANSAT64G0390 Cannabis sativa HOM05D001542 ORTHO05D001416 9.2e-17 90.5 112 47.3
Cpa.g.sc1111.2 Carica papaya HOM05D001542 ORTHO05D001416 9.2e-17 90.5 112 49.1
Hund15537 Selenicereus undatus HOM05D001542 ORTHO05D001416 9.2e-17 90.5 112 46.4
DCAR_011655 Daucus carota HOM05D001542 ORTHO05D001416 1.2e-16 90.1 117 44.4
CAN.G733.1 Capsicum annuum HOM05D001542 ORTHO05D001416 1.6e-16 89.7 112 47.3
Duzib138G0508 Durio zibethinus HOM05D001542 ORTHO05D001416 2.1e-16 89.4 112 51.8
Nitab4.5_0021050g0010 Nicotiana tabacum HOM05D001542 ORTHO05D001416 2.1e-16 89.4 115 46.1
MD09G1275900 Malus domestica HOM05D001542 ORTHO05D001416 2.7e-16 89.0 110 48.2
ATR0564G240 Amborella trichopoda HOM05D001542 ORTHO05D001416 3.5e-16 88.6 104 47.1
Lj2A523G86 Lonicera japonica HOM05D001542 ORTHO05D001416 3.5e-16 88.6 115 44.3
Sabra04G0057700 Salix brachista HOM05D001542 ORTHO05D001416 4.6e-16 88.2 111 45.0
CsaV3_3G020970 Cucumis sativus L. HOM05D001542 ORTHO05D001416 6.0e-16 87.8 117 47.0
Migut.K00902 Erythranthe guttata HOM05D001542 ORTHO05D001416 6.0e-16 87.8 115 45.2
Duzib133G0878 Durio zibethinus HOM05D001542 ORTHO05D001416 1.0e-15 87.0 111 47.7
ECA246G4243 Erigeron canadensis HOM05D000006 ORTHO05D001416 1.0e-15 87.0 122 42.6
Lj2A521G73 Lonicera japonica HOM05D001542 ORTHO05D001416 1.0e-15 87.0 115 43.5
Nitab4.5_0000201g0190 Nicotiana tabacum HOM05D001542 ORTHO05D001416 1.0e-15 87.0 113 47.8
Sed0007628 Sechium edule HOM05D001542 ORTHO05D001416 1.3e-15 86.7 109 45.0
Solyc11g011120.2 Solanum lycopersicum HOM05D001542 ORTHO05D001416 1.7e-15 86.3 113 45.1
Potri.004G086900 Populus trichocarpa HOM05D001542 ORTHO05D001416 2.3e-15 85.9 111 45.0
QL02p058158 Quercus lobata HOM05D001542 ORTHO05D001416 2.3e-15 85.9 111 47.7
Oeu012253.1 Olea europaea HOM05D001542 ORTHO05D001416 3.0e-15 85.5 113 46.0
Thecc.04G114400 Theobroma cacao HOM05D001542 ORTHO05D001416 3.0e-15 85.5 109 47.7
Eucgr.F02855 Eucalyptus grandis HOM05D001542 ORTHO05D001416 6.6e-15 84.3 116 46.6
Gohir.A07G177100 Gossypium hirsutum HOM05D001542 ORTHO05D001416 6.6e-15 84.3 112 47.3
Hma1.2p1_0158F.1_g070170 Hydrangea macrophylla HOM05D001542 ORTHO05D001416 8.6e-15 84.0 104 48.1
Ca_17102_v3 Cicer arietinum L. HOM05D001542 ORTHO05D001416 1.1e-14 83.6 111 43.2
Ca_30888_v3 Cicer arietinum L. HOM05D001542 ORTHO05D001416 1.1e-14 83.6 111 43.2
PSO478G4005 Papaver somniferum HOM05D001542 ORTHO05D001416 1.5e-14 83.2 112 45.5
Peaxi162Scf01350g00020 Petunia axillaris HOM05D001542 ORTHO05D001416 1.5e-14 83.2 95 50.5
Sopen11g005880 Solanum pennellii HOM05D001542 ORTHO05D001416 1.5e-14 83.2 113 43.4
ClCG05G011460 Citrullus lanatus HOM05D001542 ORTHO05D001416 1.9e-14 82.8 114 41.2
RcHm_v2.0_Chr3g0490261 Rosa chinensis HOM05D001542 ORTHO05D001416 1.9e-14 82.8 112 43.8
PGSC0003DMG400015670 Solanum tuberosum HOM05D001542 ORTHO05D001416 1.9e-14 82.8 113 44.2
AUR62018214 Chenopodium quinoa HOM05D001542 ORTHO05D001416 2.5e-14 82.4 109 44.0
Sp7g04350 Schrenkiella parvula HOM05D001542 ORTHO05D001416 2.5e-14 82.4 115 45.2
MSTRG.3714 Avicennia marina HOM05D001542 ORTHO05D001416 3.3e-14 82.0 108 44.4
Gorai.001G204800 Gossypium raimondii HOM05D001542 ORTHO05D001416 3.3e-14 82.0 112 46.4
Peaxi162Scf00305g00521 Petunia axillaris HOM05D001542 ORTHO05D001416 4.3e-14 81.6 112 43.8
Zm00001eb280760 Zea mays HOM05D001542 ORTHO05D001416 4.3e-14 81.6 110 43.6
Gohir.D07G182300 Gossypium hirsutum HOM05D001542 ORTHO05D001416 5.6e-14 81.3 112 46.4
AUR62038704 Chenopodium quinoa HOM05D001542 ORTHO05D001416 7.3e-14 80.9 109 44.0
Rhsim10G0177400 Rhododendron simsii HOM05D001542 ORTHO05D001416 7.3e-14 80.9 107 44.9
HPP92_024825 Vanilla planifolia HOM05D001542 ORTHO05D001416 7.3e-14 80.9 106 45.3
SGA_v2.0_scaffold45G17180 Striga asiatica HOM05D001542 ORTHO05D001416 9.5e-14 80.5 113 43.4
Sabra17G0108200 Salix brachista HOM05D001542 ORTHO05D001416 1.6e-13 79.7 111 44.1
PSO017G3668 Papaver somniferum HOM05D001542 ORTHO05D001416 2.1e-13 79.3 111 43.2
Psat5g121160 Pisum sativum HOM05D001542 ORTHO05D001416 2.1e-13 79.3 111 40.5
VMungo1383G1678 Vigna mungo HOM05D001542 ORTHO05D001416 2.1e-13 79.3 112 45.5
Actinidia35729 Actinidia chinensis HOM05D001542 ORTHO05D001416 3.6e-13 78.6 112 45.5
EL10Ac2g03174 Beta vulgaris HOM05D001542 ORTHO05D001416 3.6e-13 78.6 104 43.3
Eucgr.F02857 Eucalyptus grandis HOM05D001542 ORTHO05D001416 3.6e-13 78.6 114 45.6
vmacro07696 Vaccinium macrocarpon HOM05D001542 ORTHO05D001416 3.6e-13 78.6 107 44.9
Ah.12g060130 Amaranthus hybridus HOM05D001542 ORTHO05D001416 4.7e-13 78.2 110 40.0
Aqoxy3G04083 Aquilegia oxysepala HOM05D001542 ORTHO05D001416 8.1e-13 77.4 132 35.6
Potri.017G130000 Populus trichocarpa HOM05D001542 ORTHO05D001416 8.1e-13 77.4 111 43.2
vmacro18534 Vaccinium macrocarpon HOM05D001542 ORTHO05D001416 8.1e-13 77.4 104 45.2
CSS0046030 Camellia sinensis var. sinensis HOM05D001542 ORTHO05D001416 1.1e-12 77.0 104 51.9
BcaB06g27125 Brassica carinata HOM05D001542 ORTHO05D001416 1.4e-12 76.6 112 42.0
CAN.G222.29 Capsicum annuum HOM05D001542 ORTHO05D001416 1.4e-12 76.6 114 43.0
SalBow5G3804 Salvia bowleyana HOM05D001542 ORTHO05D001416 1.4e-12 76.6 111 41.4
SalBow5G4507 Salvia bowleyana HOM05D001542 ORTHO05D001416 1.4e-12 76.6 111 41.4
CARHR215130 Cardamine hirsuta HOM05D001542 ORTHO05D001416 1.8e-12 76.3 114 42.1
Lalb_Chr20g0116961 Lupinus albus HOM05D001542 ORTHO05D001416 2.3e-12 75.9 111 38.7
AL7G46550 Arabidopsis lyrata HOM05D001542 ORTHO05D001416 3.1e-12 75.5 112 42.0
Medtr3g065480 Medicago truncatula HOM05D001542 ORTHO05D001416 3.1e-12 75.5 111 39.6
Os06g0256300 Oryza sativa ssp. japonica HOM05D001542 ORTHO05D001416 3.1e-12 75.5 110 40.9
Eucgr.F02854 Eucalyptus grandis HOM05D001542 ORTHO05D001416 4.0e-12 75.1 116 44.0
Carub.0007s3287 Capsella rubella HOM05D001542 ORTHO05D001416 5.2e-12 74.7 114 40.4
Sc10g0004780 Simmondsia chinensis HOM05D001542 ORTHO05D001416 5.2e-12 74.7 113 39.8
Lsat_1_v5_gn_3_65121 Lactuca sativa HOM05D001542 ORTHO05D001416 6.8e-12 74.3 110 39.1
Glyma.11G216100 Glycine max HOM05D001542 ORTHO05D001416 1.2e-11 73.6 115 40.0
Sed0009141 Sechium edule HOM05D001542 ORTHO05D001416 1.2e-11 73.6 111 39.6
Eucgr.F02858 Eucalyptus grandis HOM05D001542 ORTHO05D001416 1.5e-11 73.2 116 42.2
SGA_v2.0_scaffold2G00938 Striga asiatica HOM05D001542 ORTHO05D001416 3.4e-11 72.0 102 42.2
CDE11G0892 Ceratophyllum demersum HOM05D001542 ORTHO05D001416 5.8e-11 71.2 99 45.5
Manes.02G077000 Manihot esculenta HOM05D001542 ORTHO05D001416 5.8e-11 71.2 111 38.7
A04p10890 Brassica napus HOM05D001542 ORTHO05D001416 7.5e-11 70.9 112 41.1
BraA04t16755Z Brassica rapa HOM05D001542 ORTHO05D001416 7.5e-11 70.9 112 41.1
BcaC02g09606 Brassica carinata HOM05D001542 ORTHO05D001416 1.3e-10 70.1 112 41.1
C04p44640 Brassica napus HOM05D001542 ORTHO05D001416 1.3e-10 70.1 112 41.1
BolC4t26037H Brassica oleracea HOM05D001542 ORTHO05D001416 1.3e-10 70.1 112 41.1
MBI19_g34825_MAGBIO Magnolia biondii HOM05D001542 ORTHO05D001416 1.3e-10 70.1 111 43.2
arahy.Tifrunner.gnm1.ann1.S4A3WS Arachis hypogaea HOM05D001542 ORTHO05D001416 1.7e-10 69.7 100 42.0
arahy.Tifrunner.gnm1.ann1.PWMR1T Arachis hypogaea HOM05D001542 ORTHO05D001416 2.2e-10 69.3 100 42.0
AUR62016251 Chenopodium quinoa HOM05D001542 ORTHO05D001416 2.2e-10 69.3 95 44.2
Aa31LG9G17420 Aethionema arabicum HOM05D001542 ORTHO05D001416 2.9e-10 68.9 105 41.0
Migut.H02260 Erythranthe guttata HOM05D001542 ORTHO05D001416 2.9e-10 68.9 56 62.5
Manes.01G118600 Manihot esculenta HOM05D001542 ORTHO05D001416 2.9e-10 68.9 101 42.6
HPP92_008006 Vanilla planifolia HOM05D001542 ORTHO05D001416 4.9e-10 68.2 102 42.2
HanXRQChr12g0368911 Helianthus annuus HOM05D001542 ORTHO05D001416 6.4e-10 67.8 125 36.0
CDE04G0665 Ceratophyllum demersum HOM05D001542 ORTHO05D001416 1.9e-09 66.2 101 38.6
Lj6g0018883 Lotus japonicus HOM05D001542 ORTHO05D001416 1.9e-09 66.2 98 42.9
Gohir.A12G256500 Gossypium hirsutum HOM05D001542 ORTHO05D001416 3.2e-09 65.5 102 41.2
Gohir.D12G257800 Gossypium hirsutum HOM05D001542 ORTHO05D001416 3.2e-09 65.5 102 41.2
Gorai.008G276100 Gossypium raimondii HOM05D001542 ORTHO05D001416 3.2e-09 65.5 102 41.2
Thhalv10027768m.g Eutrema salsugineum HOM05D001542 ORTHO05D001416 4.1e-09 65.1 113 38.1
Phvul.001G230100 Phaseolus vulgaris HOM05D001542 ORTHO05D001416 4.1e-09 65.1 89 42.7
Hund13107 Selenicereus undatus HOM05D001542 ORTHO05D001416 4.1e-09 65.1 117 34.2
VMungo1309G2892 Vigna mungo HOM05D001542 ORTHO05D001416 5.4e-09 64.7 112 39.3
Hund29820 Selenicereus undatus HOM05D001542 ORTHO05D001416 7.1e-09 64.3 102 39.2
SEGI_22822 Sequoiadendron giganteum HOM05D001542 ORTHO05D001416 9.2e-09 63.9 104 39.4
Lsat_1_v5_gn_8_115481 Lactuca sativa HOM05D001542 ORTHO05D001416 1.0e-07 60.5 105 41.0
Glyma.18G040500 Glycine max HOM05D001542 ORTHO05D001416 1.3e-07 60.1 113 36.3
THA.LOC104822315 Tarenaya hassleriana HOM05D001542 ORTHO05D001416 1.3e-07 60.1 102 37.3
unitig_0.g2647 Utricularia gibba HOM05D001542 ORTHO05D001416 1.7e-07 59.7 96 41.7
COL.COLO4_28050 Corchorus olitorius HOM05D001542 ORTHO05D001416 3.9e-07 58.5 102 38.2
Gohir.A09G041300 Gossypium hirsutum HOM05D001542 ORTHO05D001416 5.1e-07 58.2 102 38.2
Gohir.D09G042100 Gossypium hirsutum HOM05D001542 ORTHO05D001416 5.1e-07 58.2 102 38.2
Gorai.006G048400 Gossypium raimondii HOM05D001542 ORTHO05D001416 5.1e-07 58.2 102 38.2
SGA_v2.0_scaffold60G21064 Striga asiatica HOM05D001542 ORTHO05D001416 5.1e-07 58.2 111 36.9
Cc07_g13430 Coffea canephora HOM05D001542 ORTHO05D001416 6.6e-07 57.8 69 47.8
MSTRG.8465 Avicennia marina HOM05D001542 ORTHO05D001416 8.6e-07 57.4 102 36.3
GSVIVG01028916001 Vitis vinifera HOM05D001542 ORTHO05D001416 1.5e-06 56.6 102 36.3
CSS0016631 Camellia sinensis var. sinensis HOM05D001542 ORTHO05D001416 1.9e-06 56.2 102 35.3
Manes.06G149400 Manihot esculenta HOM05D001542 ORTHO05D001416 3.3e-06 55.5 102 36.3
Nitab4.5_0000084g0050 Nicotiana tabacum HOM05D001542 ORTHO05D001416 3.3e-06 55.5 102 37.3
Potri.012G142700 Populus trichocarpa HOM05D001542 ORTHO05D001416 3.3e-06 55.5 102 37.3
TAR375G0748 Trochodendron aralioides HOM05D001542 ORTHO05D001416 4.3e-06 55.1 102 34.3
Ah.13g068870 Amaranthus hybridus HOM05D001542 ORTHO05D001416 9.5e-06 53.9 107 38.3
CAN.G1175.6 Capsicum annuum HOM05D001542 ORTHO05D001416 9.5e-06 53.9 102 33.3
Oeu002128.1 Olea europaea HOM05D001542 ORTHO05D001416 9.5e-06 53.9 111 33.3
PGR042G0090 Punica granatum HOM05D001542 ORTHO05D001416 9.5e-06 53.9 106 35.8


User provided reference genes

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