Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 4786.1 2421 100.0
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3392.8 2435 71.4
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3355.8 2432 70.6
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3300.0 2448 70.1
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 3184.0 2436 68.1
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3161.3 2434 67.5
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 3152.5 2442 67.1
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3149.4 2434 67.4
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3136.3 2433 66.8
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 3109.3 2433 66.2
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3091.6 2425 66.1
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 3086.2 2436 65.9
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3082.4 2425 66.1
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3063.5 2546 63.7
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3061.2 2432 66.3
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3058.5 2439 65.8
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3053.1 2433 65.8
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3052.7 2436 65.6
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3051.9 2438 65.6
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3051.5 2436 65.4
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3045.0 2436 65.3
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3040.4 2437 65.6
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3037.3 2441 65.2
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3031.5 2484 64.5
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3029.6 2436 65.0
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3026.1 2474 63.7
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3026.1 2448 64.5
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3025.7 2438 64.7
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 2994.1 2428 64.7
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 2986.4 2437 64.0
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 2981.4 2431 64.7
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 2976.0 2431 64.2
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 2971.8 2430 63.5
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 2965.6 2435 64.1
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 2962.6 2447 63.7
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 2957.2 2447 63.3
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 2948.7 2439 63.4
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 2937.1 2446 63.1
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 2936.0 2441 62.3
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 2935.6 2434 63.3
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 2931.4 2441 63.0
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 2931.0 2449 62.4
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 2931.0 2441 63.0
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 2924.8 2449 64.0
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 2924.4 2442 62.7
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 2924.0 2442 62.1
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 2922.1 2434 63.0
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 2918.3 2455 62.9
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 2915.9 2448 62.3
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 2915.9 2438 62.8
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 2890.9 2434 63.2
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 2879.7 2439 62.5
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 2856.2 2446 61.2
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 2856.2 2436 62.1
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 2845.1 2440 61.4
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2813.9 2438 61.4
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 2794.6 2433 60.7
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 2786.9 2444 60.7
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 2780.7 2434 60.4
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 2775.3 2440 60.5
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 2773.4 2443 60.3
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 2771.9 2427 61.4
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 2768.4 2439 60.2
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 2761.5 2437 60.1
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 2760.7 2438 60.1
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 2760.7 2438 60.1
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 2744.1 2434 60.0
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 2728.0 2466 59.2
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 2720.7 2454 59.4
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 2689.1 2441 59.2
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 2683.3 2444 59.2
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2673.3 2029 68.8
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2612.8 2286 61.1
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2515.0 2182 60.5
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 2509.2 2198 60.3
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2423.7 2442 53.9
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2344.3 2451 52.8
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2297.7 2201 56.7
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2280.4 2501 51.5
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2275.4 2285 55.8
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2274.6 1601 74.0
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2112.0 1991 57.3
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2111.6 1702 64.8
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2036.5 1504 70.4
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2011.5 2535 46.5
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2001.9 1462 70.6
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1996.1 1810 60.6
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1927.5 1444 70.4
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1783.5 2199 47.4
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1761.5 2541 42.4
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1759.6 2553 41.7
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1638.2 2506 40.6
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1564.3 1607 53.2
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1508.8 1601 52.0
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1507.7 1005 76.2
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1298.5 1259 54.8
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1267.7 1554 48.5
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1229.9 977 65.7
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1209.9 997 63.5
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1182.2 843 71.8
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1154.0 1350 49.2
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1119.0 836 69.7
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 4.9e-306 1055.8 974 59.3
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.9e-302 1043.9 853 63.9
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 7.4e-294 1015.4 1138 53.1
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 8.2e-293 1011.9 3054 28.5
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 8.5e-266 922.2 914 53.4
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.3e-258 898.3 892 52.2
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.6e-240 838.2 756 57.4
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 3.8e-205 720.7 411 89.1
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.7e-202 711.8 441 81.6
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 2.8e-192 677.9 679 52.0
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.4e-146 526.2 641 46.3
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 9.1e-135 486.9 455 55.2
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 4.4e-129 468.0 327 72.5
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 3.1e-127 461.8 660 40.9
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 6.1e-123 447.6 270 83.0
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 5.2e-122 444.5 250 88.4
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 3.5e-118 431.8 455 53.0
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 7.3e-116 424.1 416 55.0
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 1.2e-110 406.8 423 54.8
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 1.3e-109 403.3 531 46.9
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 1.6e-107 396.4 569 44.6
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 3.1e-106 392.1 417 50.8
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 6.2e-99 367.9 302 60.9
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 4.9e-96 358.2 217 84.8
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 1.9e-92 346.3 339 58.1
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 2.4e-90 339.3 244 68.4
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 1.3e-80 307.0 574 35.7
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 4.2e-79 302.0 245 59.2
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.6e-78 300.1 308 54.9
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 8.7e-77 294.3 353 46.2
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 1.3e-72 280.4 330 49.4
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 1.5e-65 256.9 343 45.5
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 1.7e-56 226.9 337 40.4
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 2.2e-51 209.9 155 65.2
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 3.3e-44 186.0 391 32.5
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 2.8e-43 183.0 197 52.3
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 9.7e-36 157.9 118 68.6
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 1.1e-31 144.4 82 85.4
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 8.2e-27 128.3 96 68.8
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 3.1e-26 126.3 86 73.3
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.2e-25 124.4 382 27.7
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 4.5e-25 122.5 122 59.0
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 5.0e-24 119.0 111 45.0
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 8.5e-24 118.2 156 49.4
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-22 114.4 110 56.4
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 2.7e-22 113.2 103 65.0
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 6.3e-19 102.1 93 47.3
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 1.3e-16 94.4 69 69.6
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 2.6e-12 80.1 64 59.4
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 7.7e-09 68.6 45 73.3
Lsat_1_v5_gn_6_660 Lactuca sativa HOM05D003133 ORTHO05D003642 1.7e-08 67.4 58 50.0
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 2.9e-08 66.6 44 75.0
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 8.6e-08 65.1 58 56.9
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 3.6e-06 59.7 45 68.9


User provided reference genes

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