Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 1556.6 781 100.0
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 1.3e-186 657.5 821 48.0
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 5.9e-176 622.1 813 45.9
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 1.0e-151 541.6 812 41.3
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 2.9e-151 540.0 816 41.3
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 3.6e-149 533.1 795 42.0
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 4.0e-148 529.6 821 41.0
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 4.2e-142 509.6 814 41.5
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 2.3e-140 503.8 819 39.3
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 7.5e-139 498.8 817 39.5
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 7.5e-139 498.8 816 38.7
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 2.8e-138 496.9 803 39.4
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 5.9e-136 489.2 811 39.0
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 5.9e-136 489.2 806 39.5
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 1.0e-135 488.4 812 39.4
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 1.3e-135 488.0 812 39.4
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 5.0e-135 486.1 815 39.8
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 1.5e-134 484.6 811 39.1
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 9.5e-134 481.9 806 39.8
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 3.6e-133 479.9 806 38.1
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 1.8e-132 477.6 813 40.0
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 1.2e-131 474.9 799 37.7
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 2.0e-131 474.2 806 38.2
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 2.6e-131 473.8 805 39.3
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 3.4e-131 473.4 806 38.2
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 5.7e-131 472.6 816 38.4
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 1.6e-128 464.5 805 37.9
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 7.8e-128 462.2 806 37.5
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 2.3e-127 460.7 804 37.2
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 7.3e-126 455.7 812 38.3
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 2.1e-125 454.1 808 38.0
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 6.4e-122 442.6 825 37.2
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 2.7e-120 437.2 816 36.2
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 3.3e-118 430.3 815 37.2
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 3.6e-117 426.8 774 35.5
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 5.2e-116 422.9 803 36.2
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 6.8e-116 422.5 796 36.3
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.5e-115 421.4 795 36.4
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 5.8e-115 419.5 801 34.7
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 2.2e-114 417.5 808 36.1
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 6.4e-114 416.0 810 36.5
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 8.3e-114 415.6 805 35.4
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 8.3e-114 415.6 798 35.8
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 5.4e-113 412.9 804 36.2
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 2.1e-112 411.0 804 36.3
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 3.5e-112 410.2 797 37.4
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 5.1e-111 406.4 677 36.5
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 8.6e-111 405.6 809 35.0
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 4.3e-110 403.3 810 34.7
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 5.6e-110 402.9 785 34.6
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 7.3e-110 402.5 805 36.4
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 2.1e-109 401.0 821 34.8
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 3.6e-109 400.2 815 35.5
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 3.1e-108 397.1 840 35.2
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 1.7e-106 391.3 815 34.0
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 1.4e-105 388.3 811 34.4
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 5.4e-105 386.3 814 33.7
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 1.6e-104 384.8 817 33.7
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 6.0e-104 382.9 817 33.0
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 1.7e-103 381.3 777 34.4
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 1.1e-102 378.6 817 33.2
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 2.8e-101 374.0 825 33.5
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 8.1e-101 372.5 810 33.7
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 3.1e-100 370.5 818 33.6
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 4.0e-100 370.2 816 33.7
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 6.9e-100 369.4 799 34.0
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 2.0e-99 367.9 815 34.0
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 1.3e-98 365.2 823 32.9
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 2.9e-98 364.0 834 32.6
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 2.9e-98 364.0 815 32.9
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 4.6e-96 356.7 824 33.0
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 1.3e-95 355.1 815 32.9
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 3.9e-95 353.6 823 33.4
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 5.1e-95 353.2 827 32.4
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 6.6e-95 352.8 822 32.8
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 1.1e-94 352.1 825 32.1
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 1.1e-94 352.1 803 32.1
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 2.5e-94 350.9 819 32.6
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 5.6e-94 349.7 806 32.4
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 5.6e-94 349.7 829 32.3
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 5.6e-94 349.7 824 33.3
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 5.6e-94 349.7 802 31.8
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 2.1e-93 347.8 803 31.9
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 4.5e-91 340.1 810 32.6
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 5.8e-91 339.7 793 31.9
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 9.9e-91 339.0 794 31.9
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 3.9e-87 327.0 783 33.3
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 2.7e-80 304.3 895 30.6
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 2.9e-74 284.3 563 36.6
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 3.2e-73 280.8 818 29.6
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 4.2e-73 280.4 795 29.7
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 8.7e-63 246.1 455 36.7
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 7.2e-57 226.5 790 26.8
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 4.5e-51 207.2 926 24.9
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 9.7e-46 189.5 792 26.4
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 1.0e-42 179.5 687 26.2
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 5.5e-33 147.1 245 38.4
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.0e-30 138.7 604 24.7
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 5.4e-28 130.6 985 22.3
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 2.3e-15 88.6 444 22.3
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 1.3e-13 82.8 408 20.8
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 1.2e-08 66.2 49 67.3
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 2.8e-08 65.1 132 34.1
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 2.0e-06 58.9 58 56.9


User provided reference genes

Program Settings