Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 1.1e-141 506.5 250 100.0
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 1.5e-117 426.4 248 88.3
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 5.6e-112 407.9 254 81.1
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 1.2e-111 406.8 254 80.7
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 1.6e-111 406.4 254 81.1
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 6.2e-111 404.4 253 81.0
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 4.0e-110 401.7 254 78.7
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 4.0e-110 401.7 254 79.1
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 4.0e-110 401.7 254 79.9
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 4.0e-110 401.7 254 78.7
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 5.2e-110 401.4 254 78.7
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 6.8e-110 401.0 254 79.1
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 6.8e-110 401.0 254 79.1
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 6.8e-110 401.0 254 79.1
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 6.8e-110 401.0 254 79.1
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 8.9e-110 400.6 254 79.5
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 8.9e-110 400.6 254 79.5
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.2e-109 400.2 254 79.1
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 2.6e-109 399.1 249 79.9
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 3.4e-109 398.7 254 78.7
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 3.4e-109 398.7 253 79.4
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 4.4e-109 398.3 254 79.1
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 5.8e-109 397.9 254 78.0
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 5.8e-109 397.9 254 78.0
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 5.8e-109 397.9 254 79.1
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 7.5e-109 397.5 254 78.3
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 7.5e-109 397.5 254 78.3
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 9.8e-109 397.1 248 79.8
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 1.3e-108 396.7 254 78.7
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.3e-108 396.7 254 78.3
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.3e-108 396.7 254 78.3
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.3e-108 396.7 254 78.3
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 1.3e-108 396.7 253 78.7
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 2.2e-108 396.0 254 77.6
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 3.7e-108 395.2 254 78.7
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 6.4e-108 394.4 254 78.7
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 6.4e-108 394.4 254 78.7
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 6.4e-108 394.4 254 78.0
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 1.4e-107 393.3 254 78.3
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 1.4e-107 393.3 254 77.6
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 1.9e-107 392.9 254 77.2
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 1.9e-107 392.9 254 77.2
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 1.9e-107 392.9 254 77.2
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 1.9e-107 392.9 254 78.0
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 1.9e-107 392.9 254 78.0
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 1.9e-107 392.9 254 78.0
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 2.4e-107 392.5 254 77.2
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 2.4e-107 392.5 254 77.2
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 3.2e-107 392.1 254 78.0
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 3.2e-107 392.1 254 78.3
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 3.2e-107 392.1 254 77.2
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 4.1e-107 391.7 254 77.6
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 4.1e-107 391.7 254 77.6
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 4.1e-107 391.7 254 77.6
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 5.4e-107 391.3 254 77.6
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 5.4e-107 391.3 270 73.7
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 5.4e-107 391.3 254 77.2
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 5.4e-107 391.3 254 77.2
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 7.0e-107 391.0 254 77.2
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 7.0e-107 391.0 254 77.2
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 7.0e-107 391.0 254 78.0
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 9.2e-107 390.6 254 77.2
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 9.2e-107 390.6 254 77.2
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.2e-106 390.2 254 77.2
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.2e-106 390.2 254 77.2
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 1.2e-106 390.2 254 77.2
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 1.6e-106 389.8 254 77.6
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 1.6e-106 389.8 254 77.6
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 1.6e-106 389.8 253 77.5
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 2.0e-106 389.4 251 78.1
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 2.0e-106 389.4 254 77.2
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 2.0e-106 389.4 258 76.7
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 3.5e-106 388.7 254 77.2
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 3.5e-106 388.7 254 77.2
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 4.6e-106 388.3 254 76.8
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 4.6e-106 388.3 254 76.4
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 6.0e-106 387.9 254 76.4
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 6.0e-106 387.9 254 78.0
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 7.8e-106 387.5 254 76.8
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 1.0e-105 387.1 254 77.2
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 1.0e-105 387.1 254 76.8
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 1.0e-105 387.1 254 76.8
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.0e-105 387.1 254 76.8
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 1.0e-105 387.1 254 76.4
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.3e-105 386.7 254 76.8
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 1.3e-105 386.7 252 77.8
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 1.7e-105 386.3 253 76.3
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 1.7e-105 386.3 249 77.1
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 2.3e-105 386.0 254 76.0
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 3.9e-105 385.2 254 76.0
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 6.6e-105 384.4 254 75.6
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 8.6e-105 384.0 262 75.2
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 8.6e-105 384.0 253 77.5
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 1.1e-104 383.6 249 76.7
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 1.9e-104 382.9 254 75.6
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.9e-104 382.9 248 77.8
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 2.5e-104 382.5 254 76.0
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.5e-104 382.5 254 76.0
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 2.5e-104 382.5 254 75.6
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 2.5e-104 382.5 254 75.2
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 5.6e-104 381.3 248 77.4
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 5.6e-104 381.3 254 75.6
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 9.5e-104 380.6 253 75.5
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 9.5e-104 380.6 253 75.5
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 1.6e-103 379.8 254 75.2
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 1.6e-103 379.8 254 75.2
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 2.1e-103 379.4 254 74.8
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 2.1e-103 379.4 254 75.6
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 2.8e-103 379.0 254 74.8
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 4.7e-103 378.3 254 74.4
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 8.1e-103 377.5 253 75.1
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 1.1e-102 377.1 252 75.4
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 1.1e-102 377.1 252 75.4
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 1.8e-102 376.3 254 74.8
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.8e-102 376.3 254 74.8
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 1.8e-102 376.3 254 74.8
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 3.1e-102 375.6 254 75.2
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 6.8e-102 374.4 253 75.9
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 1.2e-101 373.6 254 74.8
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.2e-101 373.6 254 74.8
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.2e-101 373.6 254 74.8
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 2.0e-101 372.9 252 73.0
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 2.0e-101 372.9 252 76.2
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 2.6e-101 372.5 253 73.9
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 2.6e-101 372.5 254 74.4
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 3.4e-101 372.1 249 73.1
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 4.4e-101 371.7 243 77.4
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 5.8e-101 371.3 249 73.5
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 9.8e-101 370.5 254 74.4
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 2.9e-100 369.0 254 72.4
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 1.6e-98 363.2 261 72.0
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 1.0e-97 360.5 252 70.6
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.6e-95 352.1 337 58.2
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 4.7e-95 351.7 254 71.3
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 1.1e-94 350.5 230 77.0
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 1.4e-94 350.1 249 71.5
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.8e-94 349.7 260 68.5
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 3.8e-92 342.0 182 89.0
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 1.1e-91 340.5 182 89.0
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 5.4e-91 338.2 249 69.1
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 5.4e-91 338.2 249 69.1
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 7.1e-91 337.8 252 65.9
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 3.0e-89 332.4 176 90.3
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 5.1e-89 331.6 252 67.5
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 7.3e-88 327.8 255 65.1
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 9.6e-88 327.4 254 68.9
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.6e-87 326.6 179 86.6
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 1.4e-86 323.6 180 82.8
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 5.2e-86 321.6 249 68.3
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.2e-82 310.5 302 58.3
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 2.7e-82 309.3 263 63.9
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 4.6e-82 308.5 254 66.1
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 1.8e-70 270.0 249 53.8
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 2.6e-69 266.2 146 87.0
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 3.7e-55 219.2 219 55.7
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 5.9e-53 211.8 146 70.5
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 2.8e-47 193.0 98 89.8
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 1.2e-45 187.6 150 66.7
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 2.0e-45 186.8 151 66.2
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.0e-44 182.2 98 85.7
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 3.6e-42 176.0 143 66.4
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 4.4e-40 169.1 103 80.6
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 9.7e-40 167.9 95 87.4
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 3.7e-39 166.0 96 83.3
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 1.8e-38 163.7 135 63.0
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 2.2e-36 156.8 94 81.9
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 2.8e-31 139.8 86 81.4
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 3.5e-29 132.9 84 78.6
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 3.6e-26 122.9 242 39.3
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 4.0e-25 119.4 111 59.5
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 1.5e-24 117.5 180 41.1
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 1.8e-22 110.5 103 60.2
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 6.3e-15 85.5 88 52.3
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 3.6e-10 69.7 56 62.5
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 6.1e-10 68.9 59 57.6
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 2.0e-08 63.9 37 75.7
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 3.7e-07 59.7 41 70.7
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 1.8e-06 57.4 36 66.7
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 3.1e-06 56.6 41 68.3


User provided reference genes

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