Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 2.0e-302 1041.6 502 100.0
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 7.8e-206 720.7 518 66.4
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 2.5e-204 715.7 527 66.2
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 2.5e-204 715.7 515 66.0
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 3.3e-204 715.3 525 65.1
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 7.3e-204 714.1 523 65.4
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 8.1e-203 710.7 525 64.8
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 4.0e-202 708.4 513 66.7
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 6.8e-202 707.6 525 64.6
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.4e-199 698.0 510 66.3
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.4e-199 698.0 510 66.3
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 7.1e-199 697.6 510 66.5
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 7.1e-199 697.6 510 66.5
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.3e-197 693.3 524 63.2
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.2e-195 686.8 518 66.0
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.2e-195 686.8 510 65.1
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.8e-195 685.6 512 66.2
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 6.8e-194 681.0 523 63.9
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 6.8e-194 681.0 497 67.4
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 2.0e-193 679.5 526 62.5
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 9.9e-193 677.2 513 63.4
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 4.9e-192 674.9 547 61.4
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 4.9e-192 674.9 547 61.4
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 8.4e-192 674.1 500 64.4
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.1e-191 673.7 515 64.7
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.9e-191 672.9 512 64.3
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 7.1e-191 671.0 514 63.8
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.6e-190 669.8 503 65.2
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.0e-189 667.2 503 65.0
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 5.1e-189 664.8 504 62.9
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 1.1e-188 663.7 511 63.4
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 3.3e-188 662.1 511 63.0
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.2e-187 660.2 520 61.9
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.2e-187 660.2 520 61.9
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 1.6e-187 659.8 512 62.3
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 2.1e-187 659.4 526 59.1
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 2.1e-187 659.4 532 62.6
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 3.6e-187 658.7 508 61.8
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 4.7e-187 658.3 507 62.7
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 4.4e-185 651.7 512 62.5
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 5.8e-185 651.4 504 62.5
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 2.2e-184 649.4 502 62.7
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 2.9e-184 649.0 509 62.5
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.9e-184 649.0 509 62.3
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.9e-184 648.3 509 62.3
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 1.4e-183 646.7 509 62.1
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.4e-183 646.0 522 61.7
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 5.4e-183 644.8 519 61.7
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 9.3e-183 644.0 507 62.5
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.1e-182 642.9 515 61.4
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 6.0e-182 641.3 517 61.5
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 8.7e-181 637.5 510 62.0
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 4.3e-180 635.2 515 62.1
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 5.6e-180 634.8 499 62.9
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 5.6e-180 634.8 506 61.7
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.6e-179 633.3 505 62.0
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.4e-178 630.2 510 61.0
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 3.1e-178 629.0 504 61.5
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 5.3e-178 628.2 512 58.4
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 9.9e-177 624.0 503 61.6
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.3e-176 623.6 514 59.9
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.9e-176 622.5 514 60.1
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 3.8e-176 622.1 508 58.9
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 4.9e-176 621.7 516 61.2
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 6.4e-176 621.3 514 59.7
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.4e-175 618.2 516 60.9
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.6e-174 616.7 508 60.2
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.1e-174 616.3 535 56.3
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 2.1e-174 616.3 495 61.8
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 4.6e-174 615.1 501 59.3
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 4.6e-174 615.1 502 59.4
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 7.9e-174 614.4 532 58.1
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.0e-173 614.0 508 60.6
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.3e-173 613.6 515 59.0
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 2.3e-173 612.8 511 60.5
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 8.7e-173 610.9 518 59.3
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.1e-172 610.5 518 59.5
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 3.3e-172 609.0 517 59.0
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 7.4e-172 607.8 532 57.3
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.6e-171 606.7 537 57.9
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 6.2e-171 604.7 523 57.6
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-170 604.0 525 57.9
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 1.4e-170 603.6 511 60.5
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 2.4e-170 602.8 524 57.6
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 6.9e-170 601.3 524 57.8
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 9.0e-170 600.9 537 56.8
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.6e-169 599.4 468 63.7
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 5.8e-169 598.2 521 57.6
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.3e-168 597.0 517 58.4
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.9e-168 595.9 509 58.0
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 3.8e-168 595.5 521 57.6
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 8.4e-168 594.3 515 56.1
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.1e-167 594.0 534 57.3
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 1.9e-167 593.2 500 58.2
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 3.2e-167 592.4 530 57.2
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.6e-166 590.1 517 56.1
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.1e-164 583.9 510 56.7
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 9.6e-164 580.9 404 65.6
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 2.1e-163 579.7 519 56.3
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 3.1e-162 575.9 512 58.2
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.5e-161 573.5 487 55.9
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 3.4e-161 572.4 500 54.8
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 5.8e-161 571.6 518 56.0
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.1e-159 567.4 446 63.2
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.3e-157 560.5 456 59.0
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.3e-157 560.5 518 55.8
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 3.9e-157 558.9 453 60.7
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 1.1e-154 550.8 504 56.0
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 3.2e-151 539.3 394 65.7
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 5.5e-151 538.5 440 57.7
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 1.0e-141 507.7 311 74.6
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 2.6e-140 503.1 498 52.0
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 7.4e-140 501.5 382 61.3
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 2.0e-137 493.4 311 72.0
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 2.3e-133 479.9 424 56.6
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 3.0e-133 479.6 291 75.3
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 2.4e-130 469.9 303 71.3
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 3.2e-127 459.5 311 67.5
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 2.0e-116 423.7 518 41.5
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.7e-115 420.6 288 66.7
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 2.3e-112 410.2 510 43.3
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 5.0e-112 409.1 382 53.1
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 1.5e-108 397.5 267 70.8
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 3.8e-104 382.9 246 72.0
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 9.5e-103 378.3 391 47.3
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.7e-99 367.5 238 71.8
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 3.4e-84 316.6 521 40.5
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 9.2e-82 308.5 196 71.9
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 7.8e-81 305.4 201 69.2
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 3.0e-80 303.5 308 50.0
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 3.8e-75 286.6 339 46.9
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.1e-69 268.5 212 60.8
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 1.1e-61 241.9 270 48.9
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 6.9e-61 239.2 166 68.7
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 6.4e-51 206.1 157 65.6
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 4.2e-50 203.4 155 60.0
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 4.2e-50 203.4 155 60.0
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.0e-48 198.7 200 48.5
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 5.1e-48 196.4 124 67.7
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-47 195.3 403 32.0
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 4.9e-43 179.9 241 46.1
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-42 178.7 241 45.2
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 1.2e-41 175.3 211 46.4
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 1.8e-37 161.4 164 50.6
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.4e-37 161.0 108 71.3
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 6.9e-37 159.5 248 38.7
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 2.6e-36 157.5 106 61.3
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.9e-34 151.4 174 44.3
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 1.0e-32 145.6 255 38.0
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 8.2e-30 136.0 154 45.5
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 1.2e-28 132.1 259 34.4
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 5.0e-27 126.7 259 35.1
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 5.5e-26 123.2 85 61.2
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 5.5e-26 123.2 76 67.1
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 5.5e-26 123.2 76 67.1
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 7.2e-26 122.9 156 42.9
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.2e-25 122.1 98 63.3
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 4.7e-25 120.2 98 58.2
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 3.5e-20 104.0 95 54.7
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.1e-17 94.7 59 66.1
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 3.6e-17 94.0 72 65.3
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 8.2e-14 82.8 88 44.3
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.2e-07 62.4 215 25.6
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.7e-06 58.5 34 82.4


User provided reference genes

Program Settings