Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016610 Daucus carota HOM05D008224 ORTHO05D010083 7.9e-46 186.8 98 100.0
Lj4P218T44 Lonicera japonica HOM05D008224 ORTHO05D010083 1.0e-13 80.1 106 54.7
Nitab4.5_0006286g0060 Nicotiana tabacum HOM05D008224 ORTHO05D010083 1.4e-13 79.7 100 53.0
Solyc02g083930.1 Solanum lycopersicum HOM05D008224 ORTHO05D010083 5.2e-13 77.8 98 53.1
CiPaw.08G131800 Carya illinoinensis HOM05D008224 ORTHO05D010083 2.0e-12 75.9 77 59.7
Sopen02g028710 Solanum pennellii HOM05D008224 ORTHO05D010083 2.6e-12 75.5 98 51.0
PGSC0003DMG400003638 Solanum tuberosum HOM05D008224 ORTHO05D010083 2.6e-12 75.5 91 52.7
Atru.chr4.381 Acer truncatum HOM05D008224 ORTHO05D010083 4.4e-12 74.7 101 55.4
Potri.005G114500 Populus trichocarpa HOM05D008224 ORTHO05D010083 4.4e-12 74.7 98 54.1
Thecc.01G019300 Theobroma cacao HOM05D008224 ORTHO05D010083 5.7e-12 74.3 98 56.1
Gohir.A10G098400 Gossypium hirsutum HOM05D008224 ORTHO05D010083 7.5e-12 73.9 97 51.5
Peaxi162Scf00083g00052 Petunia axillaris HOM05D008224 ORTHO05D010083 7.5e-12 73.9 98 51.0
Nitab4.5_0003271g0030 Nicotiana tabacum HOM05D008224 ORTHO05D010083 9.8e-12 73.6 101 51.5
COL.COLO4_21914 Corchorus olitorius HOM05D008224 ORTHO05D010083 1.7e-11 72.8 98 53.1
Gorai.011G098500 Gossypium raimondii HOM05D008224 ORTHO05D010083 1.7e-11 72.8 97 50.5
Gohir.D11G183450 Gossypium hirsutum HOM05D008224 ORTHO05D010083 2.2e-11 72.4 98 51.0
Gohir.A11G175668 Gossypium hirsutum HOM05D008224 ORTHO05D010083 3.7e-11 71.6 98 51.0
Gohir.D10G089800 Gossypium hirsutum HOM05D008224 ORTHO05D010083 3.7e-11 71.6 97 50.5
TAR381G1028 Trochodendron aralioides HOM05D008224 ORTHO05D010083 4.8e-11 71.2 99 57.6
Gorai.007G195300 Gossypium raimondii HOM05D008224 ORTHO05D010083 8.3e-11 70.5 98 50.0
Aqoxy5G01777 Aquilegia oxysepala HOM05D008224 ORTHO05D010083 1.1e-10 70.1 93 50.5
Medtr5g021840 Medicago truncatula HOM05D008224 ORTHO05D010083 1.8e-10 69.3 98 52.0
Phvul.002G109500 Phaseolus vulgaris HOM05D008224 ORTHO05D010083 9.1e-10 67.0 70 58.6
Actinidia22982 Actinidia chinensis HOM05D002668 ORTHO05D003295 1.2e-09 66.6 73 57.5
Sabra05G0093700 Salix brachista HOM05D008224 ORTHO05D010083 1.2e-09 66.6 100 47.0
Actinidia28703 Actinidia chinensis HOM05D008224 ORTHO05D010083 1.6e-09 66.2 89 49.4
Ciclev10027456m.g Citrus clementina HOM05D008224 ORTHO05D010083 3.5e-09 65.1 112 47.3
Lalb_Chr09g0321801 Lupinus albus HOM05D008224 ORTHO05D010083 5.9e-09 64.3 85 50.6
Prupe.7G167900 Prunus persica HOM05D008224 ORTHO05D010083 1.0e-08 63.5 80 51.2
Ah.03g148720 Amaranthus hybridus HOM05D008224 ORTHO05D010083 1.3e-08 63.2 129 40.3
CSS0002084 Camellia sinensis var. sinensis HOM05D008224 ORTHO05D010083 1.3e-08 63.2 108 46.3
Glyma.01G166900 Glycine max HOM05D008224 ORTHO05D010083 1.3e-08 63.2 70 57.1
EL10Ac6g15476 Beta vulgaris HOM05D008224 ORTHO05D010083 2.9e-08 62.0 129 36.4
Hma1.2p1_0258F.1_g104170 Hydrangea macrophylla HOM05D008224 ORTHO05D010083 3.8e-08 61.6 77 54.5
Manes.02G104200 Manihot esculenta HOM05D008224 ORTHO05D010083 3.8e-08 61.6 79 54.4
Ca_25829_v3 Cicer arietinum L. HOM05D008224 ORTHO05D010083 6.5e-08 60.8 98 46.9
Nn5g30159 Nelumbo nucifera HOM05D008224 ORTHO05D010083 6.5e-08 60.8 67 56.7
QL06p032684 Quercus lobata HOM05D008224 ORTHO05D010083 6.5e-08 60.8 83 49.4
QL12p007153 Quercus lobata HOM05D008224 ORTHO05D010083 6.5e-08 60.8 83 50.6
Thhalv10005172m.g Eutrema salsugineum HOM05D014245 ORTHO05D010083 8.5e-08 60.5 79 48.1
Rhsim10G0212800 Rhododendron simsii HOM05D008224 ORTHO05D010083 8.5e-08 60.5 100 44.0
Nn1g05883 Nelumbo nucifera HOM05D008224 ORTHO05D010083 1.1e-07 60.1 76 53.9
Actinidia17446 Actinidia chinensis HOM05D008224 ORTHO05D010083 1.5e-07 59.7 100 48.0
ECA246G4291 Erigeron canadensis HOM05D008224 ORTHO05D010083 1.5e-07 59.7 133 38.3
Lsat_1_v5_gn_3_74461 Lactuca sativa HOM05D008224 ORTHO05D010083 1.5e-07 59.7 126 42.1
Glyma.11G076300 Glycine max HOM05D008224 ORTHO05D010083 1.9e-07 59.3 70 54.3
TPR.G18188 Trifolium pratense HOM05D008224 ORTHO05D010083 2.5e-07 58.9 66 57.6
Psat2g155040 Pisum sativum HOM05D008224 ORTHO05D010083 5.5e-07 57.8 93 45.2
TAR625G0799 Trochodendron aralioides HOM05D008224 ORTHO05D010083 5.5e-07 57.8 75 50.7
CARHR281490 Cardamine hirsuta HOM05D014245 ORTHO05D010083 9.4e-07 57.0 71 50.7
Zm00001eb027000 Zea mays HOM05D046799 ORTHO05D049938 9.4e-07 57.0 107 44.9
Haze_03767 Corylus avellana HOM05D008224 ORTHO05D010083 1.2e-06 56.6 102 46.1
FvH4_1g11880 Fragaria vesca HOM05D008224 ORTHO05D010083 2.1e-06 55.8 67 52.2
FAN19G0355 Fragaria x ananassa HOM05D008224 ORTHO05D010083 2.1e-06 55.8 67 52.2
Carub.0008s2826 Capsella rubella HOM05D014245 ORTHO05D010083 2.7e-06 55.5 77 40.3
FAN26G2375 Fragaria x ananassa HOM05D011822 ORTHO05D010083 6.1e-06 54.3 102 45.1
Cc07_g10680 Coffea canephora HOM05D008224 ORTHO05D010083 8.0e-06 53.9 82 46.3
Sp2g30460 Schrenkiella parvula HOM05D014245 ORTHO05D010083 8.0e-06 53.9 69 49.3


User provided reference genes

Program Settings