Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 4.8e-42 174.1 88 100.0
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 7.6e-24 113.6 95 61.1
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 7.6e-24 113.6 95 60.0
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.6e-21 105.9 92 59.8
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 1.0e-20 103.2 90 60.0
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.9e-19 99.0 95 53.7
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 3.3e-19 98.2 95 53.7
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 3.3e-19 98.2 87 58.6
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 7.4e-19 97.1 90 54.4
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 7.4e-19 97.1 89 53.9
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 9.7e-19 96.7 86 59.3
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 2.8e-18 95.1 88 59.1
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 8.2e-18 93.6 95 53.7
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 8.2e-18 93.6 93 54.8
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 1.8e-17 92.4 96 54.2
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 4.1e-17 91.3 95 54.7
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 4.1e-17 91.3 89 56.2
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 5.3e-17 90.9 95 54.7
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 6.9e-17 90.5 96 53.1
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 2.0e-16 89.0 92 54.3
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 1.0e-15 86.7 88 50.0
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 1.3e-15 86.3 86 53.5
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 1.3e-15 86.3 89 50.6
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 1.7e-15 85.9 94 52.1
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 1.7e-15 85.9 96 47.9
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 2.9e-15 85.1 62 69.4
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 2.9e-15 85.1 87 50.6
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 5.0e-15 84.3 93 52.7
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 6.5e-15 84.0 68 60.3
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 5.5e-14 80.9 88 54.5
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 7.2e-14 80.5 87 55.2
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 9.4e-14 80.1 92 46.7
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 3.6e-13 78.2 88 48.9
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 2.3e-12 75.5 83 49.4
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 3.9e-12 74.7 91 44.0
Glyma.05G026700 Glycine max HOM05D007096 ORTHO05D008288 5.1e-12 74.3 86 48.8
Sed0011431 Sechium edule HOM05D007096 ORTHO05D008288 6.7e-12 73.9 84 48.8
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 6.7e-12 73.9 91 47.3
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.0e-11 72.4 90 44.4
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.3e-11 71.6 85 49.4
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.3e-11 71.6 90 44.4
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 4.3e-11 71.2 96 43.8
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.3e-11 71.2 82 51.2
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 4.3e-11 71.2 82 51.2
Medtr3g037730 Medicago truncatula HOM05D007096 ORTHO05D008288 4.3e-11 71.2 86 46.5
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 5.7e-11 70.9 91 45.1
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 9.7e-11 70.1 85 45.9
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.3e-10 69.7 90 43.3
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 2.2e-10 68.9 89 47.2
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.8e-10 68.6 88 44.3
Migut.I00178 Erythranthe guttata HOM05D007096 ORTHO05D008288 3.7e-10 68.2 81 48.1
Sed0013252 Sechium edule HOM05D007096 ORTHO05D008288 3.7e-10 68.2 92 44.6
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 3.7e-10 68.2 88 44.3
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 6.3e-10 67.4 89 46.1
SalBow7G4253 Salvia bowleyana HOM05D007096 ORTHO05D008288 8.2e-10 67.0 80 53.8
Migut.D01817 Erythranthe guttata HOM05D007096 ORTHO05D008288 1.8e-09 65.9 81 48.1
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 2.4e-09 65.5 91 46.2
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 3.1e-09 65.1 93 40.9
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 3.1e-09 65.1 93 40.9
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 3.1e-09 65.1 90 42.2
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 3.1e-09 65.1 88 43.2
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 4.1e-09 64.7 90 44.4
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 5.3e-09 64.3 90 43.3
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 5.3e-09 64.3 91 41.8
Thhalv10009347m.g Eutrema salsugineum HOM05D011140 ORTHO05D013248 6.9e-09 63.9 90 45.6
MELO3C001984.2 Cucumis melo HOM05D007096 ORTHO05D008288 9.1e-09 63.5 87 42.5
Lsat_1_v5_gn_4_108521 Lactuca sativa HOM05D007096 ORTHO05D008288 9.1e-09 63.5 77 48.1
Sed0019012 Sechium edule HOM05D007096 ORTHO05D008288 9.1e-09 63.5 98 37.8
MELO3C017172.2 Cucumis melo HOM05D007096 ORTHO05D008288 1.2e-08 63.2 85 45.9
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 1.2e-08 63.2 90 44.4
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 1.2e-08 63.2 90 43.3
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 1.5e-08 62.8 90 42.2
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 1.5e-08 62.8 90 42.2
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 2.6e-08 62.0 87 42.5
CsaV3_1G002320 Cucumis sativus L. HOM05D007096 ORTHO05D008288 2.6e-08 62.0 85 45.9
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 2.6e-08 62.0 78 46.2
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 3.4e-08 61.6 79 46.8
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 3.4e-08 61.6 94 40.4
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.4e-08 61.6 91 39.6
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 4.5e-08 61.2 89 41.6
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 4.5e-08 61.2 94 40.4
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 4.5e-08 61.2 91 39.6
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 5.9e-08 60.8 79 46.8
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 1.3e-07 59.7 80 43.8
CARHR019480 Cardamine hirsuta HOM05D011140 ORTHO05D013248 2.9e-07 58.5 85 42.4
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 3.8e-07 58.2 93 39.8
COL.COLO4_23015 Corchorus olitorius HOM05D007096 ORTHO05D008288 5.0e-07 57.8 65 52.3
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 6.5e-07 57.4 85 43.5
Gohir.A11G031151 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.1e-06 56.6 86 40.7
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.1e-06 56.6 82 41.5
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.1e-06 56.6 84 42.9
Sed0016779 Sechium edule HOM05D007096 ORTHO05D008288 1.1e-06 56.6 79 43.0
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 1.4e-06 56.2 87 37.9
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 1.4e-06 56.2 98 38.8
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 1.9e-06 55.8 93 39.8
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.9e-06 55.8 84 41.7
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.9e-06 55.8 82 41.5
BcaC07g38953 Brassica carinata HOM05D011140 ORTHO05D013248 3.2e-06 55.1 87 41.4
C08p18990 Brassica napus HOM05D011140 ORTHO05D013248 3.2e-06 55.1 87 41.4
BolC8t49523H Brassica oleracea HOM05D011140 ORTHO05D013248 3.2e-06 55.1 87 41.4
Eucgr.G02504 Eucalyptus grandis HOM05D007096 ORTHO05D008288 4.2e-06 54.7 93 41.9
FvH4_5g14931 Fragaria vesca HOM05D007096 ORTHO05D008288 4.2e-06 54.7 90 43.3
BcaB03g14477 Brassica carinata HOM05D011140 ORTHO05D013248 7.2e-06 53.9 89 42.7
Gohir.D11G034500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.2e-06 53.9 89 39.3
Gohir.A03G101000 Gossypium hirsutum HOM05D007096 ORTHO05D008288 9.4e-06 53.5 80 40.0


User provided reference genes

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