Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 1.7e-213 746.1 500 100.0
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 1.2e-113 414.5 548 59.9
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.0e-109 399.4 547 62.0
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 7.5e-108 395.2 552 60.0
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 1.3e-107 394.4 553 60.4
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 1.7e-107 394.0 549 59.4
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 8.3e-107 391.7 548 60.0
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 2.4e-106 390.2 556 62.2
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 5.4e-106 389.0 548 56.9
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 7.0e-106 388.7 553 60.8
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 3.8e-104 382.9 590 57.5
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 1.1e-103 381.3 552 57.4
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 4.2e-103 379.4 555 58.2
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.2e-102 377.9 549 57.9
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 4.7e-102 375.9 548 56.2
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.7e-102 375.9 548 57.8
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.3e-101 373.6 548 57.7
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 1.3e-99 367.9 548 57.7
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 4.5e-97 359.4 547 57.2
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 4.5e-97 359.4 546 54.8
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.5e-97 359.4 556 59.0
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 7.7e-97 358.6 540 58.0
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 1.7e-96 357.5 548 54.9
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 2.3e-96 357.1 551 54.4
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.9e-96 356.7 546 59.3
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 1.1e-95 354.8 548 54.2
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 4.7e-94 349.4 556 51.8
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 4.0e-93 346.3 555 56.6
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 4.0e-93 346.3 561 52.8
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 8.9e-93 345.1 562 52.8
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.0e-92 344.0 549 59.0
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 2.0e-92 344.0 549 58.7
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 3.4e-92 343.2 558 53.8
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 4.4e-92 342.8 550 55.1
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 4.4e-92 342.8 550 55.6
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 1.7e-91 340.9 551 56.4
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.7e-91 340.9 570 51.9
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 8.3e-91 338.6 557 55.3
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 8.3e-91 338.6 550 57.6
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 8.3e-91 338.6 550 56.7
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 1.8e-90 337.4 560 54.3
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.4e-90 337.0 547 54.3
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 2.4e-90 337.0 547 53.4
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 3.2e-90 336.7 549 53.9
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 9.2e-90 335.1 544 53.3
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 3.5e-89 333.2 562 58.9
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 1.7e-88 330.9 547 54.5
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 2.3e-88 330.5 553 52.4
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 3.9e-88 329.7 578 55.2
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 5.0e-88 329.3 553 55.5
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 1.9e-87 327.4 550 57.8
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 2.5e-87 327.0 552 57.1
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 5.6e-87 325.9 551 55.0
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 9.5e-87 325.1 551 57.4
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 2.3e-85 320.5 552 54.3
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 6.8e-85 318.9 553 58.0
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 1.2e-84 318.2 551 53.5
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 1.5e-84 317.8 553 57.5
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 3.4e-84 316.6 556 51.8
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 4.4e-84 316.2 556 51.3
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 9.8e-84 315.1 550 54.0
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 1.3e-83 314.7 524 57.4
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.7e-83 314.3 548 55.3
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 3.2e-82 310.1 547 53.7
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 5.4e-82 309.3 557 51.3
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 7.0e-82 308.9 547 53.6
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 1.2e-81 308.1 553 54.4
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 2.0e-81 307.4 549 51.5
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 6.0e-81 305.8 551 54.3
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 6.0e-81 305.8 551 53.7
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 7.8e-81 305.4 550 54.9
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 3.0e-80 303.5 552 52.9
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 1.9e-79 300.8 554 54.2
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 5.6e-79 299.3 548 57.3
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 3.6e-78 296.6 463 56.4
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.8e-77 294.3 561 51.5
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 4.0e-77 293.1 553 49.2
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 5.8e-76 289.3 589 42.8
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 9.8e-76 288.5 550 55.6
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.4e-74 284.6 548 54.4
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 1.9e-74 284.3 547 51.6
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 2.4e-74 283.9 542 53.0
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 5.4e-74 282.7 552 53.6
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 9.2e-74 282.0 553 53.2
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 1.3e-72 278.1 549 51.9
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 3.0e-72 276.9 561 51.0
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.5e-71 274.6 547 52.7
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 1.5e-68 264.6 547 49.2
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 3.2e-66 256.9 555 47.0
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 3.2e-66 256.9 558 50.7
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 5.4e-66 256.1 561 44.9
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 4.6e-65 253.1 454 55.3
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 2.5e-63 247.3 553 47.6
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.1e-61 241.9 543 44.4
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 5.2e-61 239.6 558 45.7
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 8.9e-61 238.8 547 52.3
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 1.2e-60 238.4 599 44.4
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 1.5e-60 238.0 523 48.9
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 4.4e-60 236.5 483 52.4
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 4.4e-60 236.5 558 49.1
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 4.4e-60 236.5 547 50.8
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 1.3e-59 235.0 558 46.8
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 2.2e-59 234.2 552 44.4
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 2.4e-58 230.7 567 45.5
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 3.5e-57 226.9 561 46.2
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 1.0e-56 225.3 552 43.8
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 3.9e-56 223.4 558 45.5
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 5.1e-56 223.0 592 41.9
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 2.4e-53 214.2 572 44.6
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 7.6e-52 209.1 408 52.7
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 1.7e-51 208.0 557 44.9
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.2e-50 203.8 487 51.5
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 8.7e-48 195.7 440 50.0
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 7.3e-47 192.6 232 58.2
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.2e-43 181.0 226 56.2
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 3.8e-43 180.3 275 55.6
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 1.6e-41 174.9 386 38.3
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.3e-40 171.8 172 61.0
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 1.1e-39 168.7 596 39.1
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 9.6e-39 165.6 501 42.7
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 6.2e-38 162.9 616 40.9
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 8.1e-38 162.5 308 51.0
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 6.5e-35 152.9 155 59.4
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 1.6e-33 148.3 271 49.4
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.1e-31 142.1 541 31.8
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 1.9e-31 141.4 109 75.2
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 2.1e-30 137.9 171 52.0
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 3.7e-30 137.1 174 51.1
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 6.3e-30 136.3 139 61.9
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 5.9e-28 129.8 513 42.1
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 1.6e-25 121.7 143 62.2
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 2.1e-25 121.3 122 60.7
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 1.8e-24 118.2 107 68.2
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.8e-21 108.2 111 64.0
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 4.5e-20 103.6 59 93.2
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 1.0e-19 102.4 344 45.3
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.9e-19 100.9 66 80.3
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 7.9e-17 92.8 59 86.4
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.0e-16 90.9 100 56.0
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 1.3e-14 85.5 88 51.1
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 4.8e-14 83.6 59 81.4
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 1.8e-13 81.6 152 38.2
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 4.1e-13 80.5 74 70.3
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 4.1e-13 80.5 74 70.3
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 5.0e-11 73.6 111 64.9
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.2e-09 68.9 50 70.0
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 1.5e-07 62.0 77 55.8


User provided reference genes

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