Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 0.0e+00 1114.4 568 100.0
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 7.9e-255 883.6 566 77.4
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 3.8e-249 864.8 564 75.9
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 1.1e-245 853.2 565 77.0
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 2.5e-245 852.0 526 82.1
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 5.3e-243 844.3 605 71.6
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 4.5e-242 841.3 564 74.6
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 3.8e-241 838.2 536 79.3
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 4.9e-241 837.8 564 74.3
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 6.5e-241 837.4 564 74.5
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 2.1e-239 832.4 557 74.0
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 3.5e-239 831.6 562 74.0
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 4.6e-239 831.2 564 73.8
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 2.3e-238 828.9 566 73.9
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 1.9e-237 825.9 566 73.5
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 3.3e-237 825.1 565 74.3
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 3.3e-237 825.1 566 73.3
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.3e-236 823.2 564 73.0
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.4e-235 819.7 564 72.2
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 1.3e-233 813.1 564 72.2
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 1.4e-232 809.7 563 72.3
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 1.9e-232 809.3 561 73.3
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 3.6e-231 805.1 564 72.0
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 4.6e-231 804.7 564 72.2
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 1.5e-229 799.7 564 71.3
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 2.5e-229 798.9 563 71.8
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 2.5e-229 798.9 563 71.8
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 2.8e-228 795.4 564 71.8
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 1.2e-226 790.0 597 69.0
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 2.0e-226 789.3 564 70.9
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 2.6e-226 788.9 564 70.6
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 4.5e-226 788.1 564 71.8
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.5e-226 788.1 566 71.4
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 1.0e-225 786.9 561 71.1
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 3.2e-224 781.9 564 70.7
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 1.2e-223 780.0 591 67.9
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 1.6e-223 779.6 564 68.8
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 1.8e-222 776.2 561 71.3
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.7e-220 769.6 565 69.9
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 3.7e-220 768.5 564 70.7
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 6.3e-220 767.7 565 69.7
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 8.2e-220 767.3 565 68.7
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.8e-219 766.1 561 70.1
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 2.2e-217 759.2 566 69.4
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 6.5e-217 757.7 562 69.9
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 2.5e-216 755.7 546 70.9
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 2.7e-215 752.3 561 67.0
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 3.6e-215 751.9 589 65.4
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 3.6e-215 751.9 565 68.8
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 6.1e-215 751.1 561 66.7
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 8.0e-215 750.7 565 66.9
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.3e-214 749.2 565 68.5
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 8.8e-214 747.3 559 68.3
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 2.0e-213 746.1 565 67.8
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.6e-213 745.7 561 66.0
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.3e-213 745.3 569 68.0
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 5.7e-213 744.6 566 67.8
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 9.7e-213 743.8 564 68.4
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 6.3e-212 741.1 566 68.0
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 6.3e-212 741.1 564 67.0
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 1.6e-210 736.5 561 65.1
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 2.5e-208 729.2 569 67.1
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 6.1e-207 724.5 568 66.9
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 8.0e-207 724.2 561 64.2
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 1.8e-206 723.0 561 63.8
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 2.3e-206 722.6 520 70.8
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 3.0e-206 722.2 563 65.2
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 1.2e-205 720.3 520 69.6
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 1.5e-205 719.9 562 64.4
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 4.4e-205 718.4 565 64.4
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 1.2e-199 700.3 509 67.8
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 9.8e-197 690.6 565 64.2
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 4.8e-196 688.3 561 61.7
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 4.8e-196 688.3 559 64.2
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 2.4e-195 686.0 559 63.5
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 1.7e-193 679.9 570 61.4
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 5.0e-193 678.3 565 63.9
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 1.1e-192 677.2 561 62.2
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 9.5e-192 674.1 557 63.4
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 6.1e-191 671.4 562 60.7
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 6.8e-190 667.9 562 60.3
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 7.8e-186 654.4 560 58.8
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 1.3e-185 653.7 560 58.8
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 5.6e-184 648.3 566 59.9
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 2.2e-180 636.3 530 60.9
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 7.8e-178 627.9 563 58.3
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.0e-177 627.5 403 77.4
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 1.7e-177 626.7 508 64.2
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 4.1e-163 578.9 402 71.4
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 2.1e-162 576.6 531 56.5
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 1.8e-158 563.5 404 70.0
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.6e-157 559.7 468 62.4
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 1.1e-152 544.3 483 58.0
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 3.6e-151 539.3 564 53.2
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 1.5e-144 517.3 563 50.3
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 6.4e-140 501.9 559 51.3
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 2.4e-139 500.0 567 49.0
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 6.0e-138 495.4 365 69.9
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 1.8e-137 493.8 348 71.8
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 6.7e-137 491.9 317 77.6
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 2.1e-135 486.9 566 47.7
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.5e-131 472.2 332 69.9
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.7e-129 464.9 343 67.6
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 2.8e-127 459.9 505 51.7
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 4.2e-123 446.0 312 71.5
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.6e-98 364.4 468 45.7
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.2e-84 317.4 266 62.8
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 8.3e-79 298.9 237 64.1
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 5.0e-76 289.7 205 69.8
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.7e-74 283.1 194 71.1
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 8.0e-74 282.3 353 45.0
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.0e-72 277.7 206 68.4
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.3e-68 264.2 208 65.9
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 4.4e-64 250.0 195 68.2
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.4e-62 245.0 162 77.2
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 1.9e-59 234.6 200 62.0
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.1e-51 208.8 174 59.8
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 8.1e-50 202.6 161 66.5
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.8e-49 201.4 161 65.8
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.4e-46 191.8 123 74.0
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 9.2e-46 189.1 162 60.5
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.0e-40 171.4 153 61.4
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.7e-37 161.0 197 47.7
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 2.8e-34 151.0 169 54.4
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.8e-33 148.3 110 69.1
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.4e-32 144.1 105 64.8
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-31 142.1 92 75.0
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.1e-29 134.8 97 67.0
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.1e-26 124.8 80 76.2
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 9.0e-25 119.4 73 75.3
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.9e-24 115.9 78 70.5
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 1.4e-22 112.1 71 73.2
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 2.4e-22 111.3 93 66.7
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 6.0e-21 106.7 81 63.0
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 3.9e-20 104.0 63 76.2
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 1.6e-18 98.6 78 60.3
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 1.3e-15 89.0 89 55.1
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 5.1e-12 77.0 86 48.8
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 1.5e-11 75.5 46 69.6
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 5.7e-11 73.6 46 67.4
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 5.7e-11 73.6 46 67.4
CAN.G254.1 Capsicum annuum HOM05D003813 ORTHO05D004557 1.3e-07 62.4 39 69.2
Sabra05G0133900 Salix brachista HOM05D005920 ORTHO05D007211 1.4e-06 58.9 121 35.5
Ciclev10001211m.g Citrus clementina HOM05D005920 ORTHO05D007211 2.5e-06 58.2 100 36.0
Potri.005G177400 Populus trichocarpa HOM05D005920 ORTHO05D007211 5.5e-06 57.0 121 34.7
Cpa.g.sc64.83 Carica papaya HOM05D005920 ORTHO05D007211 7.1e-06 56.6 100 35.0


User provided reference genes

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