Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 0.0e+00 1278.5 644 100.0
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 3.2e-196 689.1 647 56.7
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 5.4e-167 592.0 519 59.7
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 7.7e-166 588.2 520 58.5
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 1.5e-164 583.9 654 50.2
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.8e-163 579.7 656 50.9
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 3.0e-162 576.2 628 51.4
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 5.7e-161 572.0 453 63.1
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 9.8e-161 571.2 635 50.2
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 2.8e-160 569.7 624 49.8
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.8e-160 569.7 649 49.0
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 8.3e-160 568.2 651 49.5
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.1e-159 567.8 521 57.0
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.4e-159 567.4 661 48.9
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 1.4e-159 567.4 633 49.0
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 3.1e-159 566.2 636 49.4
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 9.2e-159 564.7 647 49.5
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 9.2e-159 564.7 538 55.8
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 9.2e-159 564.7 652 49.7
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 1.2e-158 564.3 525 56.8
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 1.6e-158 563.9 626 50.6
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 7.8e-158 561.6 524 56.7
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 1.3e-157 560.8 647 48.7
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 1.7e-157 560.5 637 49.5
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 2.9e-157 559.7 527 56.7
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 2.9e-157 559.7 622 50.0
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 5.0e-157 558.9 531 55.4
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 1.9e-156 557.0 456 61.2
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.9e-156 557.0 427 64.9
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 2.5e-156 556.6 523 56.6
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 4.3e-156 555.8 531 55.2
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 5.6e-156 555.4 534 55.1
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 6.1e-155 552.0 640 47.7
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 2.3e-154 550.1 624 48.4
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 5.8e-153 545.4 521 56.0
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 5.8e-153 545.4 439 62.2
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 4.9e-152 542.3 446 59.9
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 8.3e-152 541.6 616 49.5
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 5.4e-151 538.9 547 54.1
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.2e-150 537.7 524 55.2
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 1.2e-150 537.7 631 47.9
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 2.0e-150 537.0 435 62.1
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 3.5e-150 536.2 532 54.1
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 3.5e-150 536.2 649 47.5
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 4.6e-150 535.8 524 55.5
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.6e-150 535.8 520 54.2
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 1.0e-149 534.6 496 56.7
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 3.0e-149 533.1 454 60.4
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 8.6e-149 531.6 520 53.5
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 8.6e-149 531.6 522 54.8
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 4.3e-148 529.3 528 53.2
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 5.6e-148 528.9 529 52.7
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 1.2e-147 527.7 573 52.0
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.6e-147 527.3 530 53.6
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.1e-147 526.9 359 68.5
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 2.8e-147 526.6 462 59.7
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 4.7e-147 525.8 359 68.2
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 6.2e-147 525.4 525 54.7
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 8.0e-147 525.0 481 56.8
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 4.0e-146 522.7 359 68.0
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 5.2e-146 522.3 461 56.8
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 8.9e-146 521.5 462 58.7
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 4.4e-145 519.2 511 53.2
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 5.8e-145 518.8 461 58.8
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 7.5e-145 518.5 354 68.9
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 9.8e-145 518.1 476 58.2
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 1.7e-144 517.3 576 50.0
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 4.9e-144 515.8 631 47.2
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 8.3e-144 515.0 473 57.3
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.4e-143 514.2 424 61.1
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.9e-143 513.8 463 58.3
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.4e-143 513.5 631 47.2
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 9.2e-143 511.5 475 57.1
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 2.1e-142 510.4 475 56.8
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 2.1e-142 510.4 528 52.7
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 4.6e-142 509.2 509 53.4
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 6.0e-142 508.8 483 54.7
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.0e-141 508.1 469 56.9
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.0e-141 508.1 470 57.0
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.0e-141 506.5 523 53.5
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.9e-141 506.1 522 52.3
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 3.9e-141 506.1 523 53.5
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 3.9e-141 506.1 643 46.7
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 6.6e-141 505.4 453 57.0
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 6.6e-141 505.4 527 51.8
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 4.3e-140 502.7 531 50.8
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 5.6e-140 502.3 463 56.8
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 5.6e-140 502.3 457 56.9
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 7.3e-140 501.9 439 58.3
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.4e-138 497.7 631 45.3
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.0e-137 493.8 470 54.9
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 4.4e-137 492.7 645 45.1
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 7.5e-137 491.9 499 52.3
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 6.4e-136 488.8 471 55.6
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 1.4e-135 487.6 402 60.2
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 7.1e-135 485.3 455 53.8
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 2.7e-134 483.4 576 49.0
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 3.5e-134 483.0 533 49.3
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 3.5e-134 483.0 436 56.0
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 5.1e-133 479.2 373 60.9
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 1.1e-132 478.0 423 58.2
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.5e-132 477.6 396 58.6
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 7.3e-132 475.3 422 56.4
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.6e-131 474.2 625 45.1
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 1.4e-130 471.1 568 47.2
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 1.5e-129 467.6 525 48.0
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 5.4e-127 459.1 299 71.2
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 7.8e-126 455.3 433 53.6
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 7.8e-126 455.3 469 52.0
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.0e-125 454.9 629 42.8
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 1.0e-125 454.9 456 50.7
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 8.7e-125 451.8 516 48.3
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 4.7e-123 446.0 353 60.6
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 1.7e-120 437.6 562 45.4
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 7.1e-119 432.2 313 64.5
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 5.1e-117 426.0 321 62.3
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 1.4e-111 407.9 631 40.7
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.4e-111 407.1 550 43.8
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.6e-110 404.4 362 52.8
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 3.5e-110 403.3 484 44.6
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 1.3e-109 401.4 377 52.3
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 1.8e-109 401.0 365 52.6
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 8.7e-109 398.7 362 51.4
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.1e-108 398.3 267 68.9
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 7.4e-108 395.6 553 42.3
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 1.3e-107 394.8 445 46.1
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 2.8e-107 393.7 347 53.9
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 3.7e-107 393.3 363 51.0
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 4.8e-107 392.9 535 41.7
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 8.1e-107 392.1 534 46.3
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 2.4e-106 390.6 554 42.2
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 2.4e-106 390.6 554 42.2
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 2.4e-106 390.6 381 52.8
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.0e-104 385.2 364 52.5
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 4.2e-103 379.8 314 59.2
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 5.1e-101 372.9 286 60.1
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 7.4e-100 369.0 226 72.1
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 6.2e-99 365.9 364 48.9
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 6.2e-99 365.9 364 48.9
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 1.8e-98 364.4 460 46.7
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 5.3e-98 362.8 442 44.3
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 5.3e-98 362.8 442 44.3
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.5e-97 361.3 423 48.0
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.0e-97 360.9 299 54.8
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 4.5e-97 359.8 417 44.8
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 7.1e-95 352.4 423 47.8
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.9e-87 327.8 209 72.2
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 7.9e-86 322.4 209 70.8
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.3e-85 320.9 544 38.1
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 2.0e-84 317.8 311 53.1
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 5.0e-80 303.1 466 42.7
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 2.7e-78 297.4 297 47.5
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 1.0e-56 225.7 518 33.6
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 5.0e-56 223.4 426 35.0
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 5.7e-52 209.9 166 59.0
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 2.4e-50 204.5 295 42.0
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 2.3e-48 198.0 403 37.7
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 1.5e-44 185.3 547 30.3
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.0e-40 172.6 282 37.2
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.6e-40 169.9 104 74.0
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 2.5e-39 167.9 119 64.7
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 2.8e-38 164.5 132 57.6
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.3e-35 155.6 227 43.2
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 9.2e-34 149.4 368 31.8
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.5e-31 142.1 79 83.5
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 6.4e-27 126.7 82 70.7
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 6.6e-24 116.7 67 79.1
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 1.9e-23 115.2 65 81.5
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 2.8e-22 111.3 90 53.3
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 2.1e-17 95.1 93 50.5
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 3.4e-12 77.8 141 38.3
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 3.2e-10 71.2 132 36.4
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 3.5e-09 67.8 222 29.3
Carub.0004s2630 Capsella rubella HOM05D005323 ORTHO05D006820 4.8e-06 57.4 71 40.8
AT2G43770 Arabidopsis thaliana HOM05D005323 ORTHO05D006820 6.2e-06 57.0 82 36.6
AL4G42640 Arabidopsis lyrata HOM05D005323 ORTHO05D006820 8.1e-06 56.6 71 40.8


User provided reference genes

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