Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016255 Daucus carota HOM05D007863 ORTHO05D009265 3.5e-40 167.9 90 100.0
Lj3g0006922 Lotus japonicus HOM05D007863 ORTHO05D009265 1.2e-08 63.2 68 54.4
CAN.G407.102 Capsicum annuum HOM05D007863 ORTHO05D009265 1.0e-07 60.1 65 53.8
TPR.G37228 Trifolium pratense HOM05D007863 ORTHO05D009265 2.3e-07 58.9 41 68.3
arahy.Tifrunner.gnm1.ann1.JQ3RYK Arachis hypogaea HOM05D007863 ORTHO05D009265 3.9e-07 58.2 41 68.3
Prupe.3G082000 Prunus persica HOM05D007863 ORTHO05D009265 3.9e-07 58.2 41 68.3
Rhsim12G0192500 Rhododendron simsii HOM05D007863 ORTHO05D009265 3.9e-07 58.2 89 47.2
CSS0005162 Camellia sinensis var. sinensis HOM05D007863 ORTHO05D009265 5.1e-07 57.8 37 75.7
DCAR_025492 Daucus carota HOM05D007863 ORTHO05D009265 5.1e-07 57.8 70 51.4
Hma1.2p1_0515F.1_g170180 Hydrangea macrophylla HOM05D007863 ORTHO05D009265 5.1e-07 57.8 80 38.8
RcHm_v2.0_Chr2g0136401 Rosa chinensis HOM05D007863 ORTHO05D009265 5.1e-07 57.8 41 65.9
Cpa.g.sc10.233 Carica papaya HOM05D007863 ORTHO05D009265 8.7e-07 57.0 77 45.5
Cfa001994 Carpinus fangiana HOM05D007863 ORTHO05D009265 8.7e-07 57.0 61 49.2
Ca_01070_v3 Cicer arietinum L. HOM05D007863 ORTHO05D009265 8.7e-07 57.0 56 53.6
Medtr2g103440 Medicago truncatula HOM05D007863 ORTHO05D009265 8.7e-07 57.0 67 49.3
Psat5g301160 Pisum sativum HOM05D007863 ORTHO05D009265 8.7e-07 57.0 69 44.9
Rhsim08G0215300 Rhododendron simsii HOM05D007863 ORTHO05D009265 8.7e-07 57.0 60 53.3
Sabra03G0036200 Salix brachista HOM05D007863 ORTHO05D009265 8.7e-07 57.0 76 44.7
Solyc03g116510.1 Solanum lycopersicum HOM05D007863 ORTHO05D009265 8.7e-07 57.0 67 50.7
Sopen03g035400 Solanum pennellii HOM05D007863 ORTHO05D009265 8.7e-07 57.0 67 50.7
MD17G1207500 Malus domestica HOM05D007863 ORTHO05D009265 1.1e-06 56.6 91 39.6
Haze_16524 Corylus avellana HOM05D007863 ORTHO05D009265 1.5e-06 56.2 47 57.4
Ciclev10027122m.g Citrus clementina HOM05D007863 ORTHO05D009265 1.9e-06 55.8 63 49.2
FAN05G0465 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.9e-06 55.8 76 44.7
Lalb_Chr14g0373721 Lupinus albus HOM05D007863 ORTHO05D009265 1.9e-06 55.8 41 65.9
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 1.9e-06 55.8 43 62.8
Glyma.13G364100 Glycine max HOM05D007863 ORTHO05D009265 2.5e-06 55.5 36 72.2
Lj3g0003830 Lotus japonicus HOM05D007863 ORTHO05D009265 2.5e-06 55.5 76 44.7
FvH4_6g30170 Fragaria vesca HOM05D007863 ORTHO05D009265 3.3e-06 55.1 76 44.7
FAN14G0247 Fragaria x ananassa HOM05D007863 ORTHO05D009265 3.3e-06 55.1 76 44.7
PGR102G1764 Punica granatum HOM05D007863 ORTHO05D009265 3.3e-06 55.1 41 65.9
Manes.11G054000 Manihot esculenta HOM05D007863 ORTHO05D009265 4.3e-06 54.7 41 65.9
Medtr4g011030 Medicago truncatula HOM05D007863 ORTHO05D009265 4.3e-06 54.7 36 69.4
Thecc.06G070300 Theobroma cacao HOM05D007863 ORTHO05D009265 4.3e-06 54.7 87 39.1
TPR.G38680 Trifolium pratense HOM05D007863 ORTHO05D009265 4.3e-06 54.7 36 69.4
Migut.I00793 Erythranthe guttata HOM05D007863 ORTHO05D009265 5.6e-06 54.3 38 68.4
FAN09G3905 Fragaria x ananassa HOM05D007863 ORTHO05D009265 5.6e-06 54.3 75 44.0
Glyma.15G009600 Glycine max HOM05D007863 ORTHO05D009265 5.6e-06 54.3 36 69.4
CiPaw.01G245400 Carya illinoinensis HOM05D007863 ORTHO05D009265 7.3e-06 53.9 42 61.9
FAN02G1499 Fragaria x ananassa HOM05D007863 ORTHO05D009265 7.3e-06 53.9 76 46.1
Nitab4.5_0001764g0040 Nicotiana tabacum HOM05D007863 ORTHO05D009265 7.3e-06 53.9 43 62.8
Nitab4.5_0010254g0050 Nicotiana tabacum HOM05D007863 ORTHO05D009265 7.3e-06 53.9 43 62.8
QL05p028236 Quercus lobata HOM05D007863 ORTHO05D009265 7.3e-06 53.9 41 63.4


User provided reference genes

Program Settings