Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016238 Daucus carota HOM05D012205 ORTHO05D014781 2.0e-236 822.4 536 100.0
DCAR_015677 Daucus carota HOM05D012205 ORTHO05D014781 1.9e-197 693.0 557 82.4
DCAR_016243 Daucus carota HOM05D012205 ORTHO05D014781 2.3e-107 393.7 352 61.1
DCAR_019182 Daucus carota HOM05D012205 ORTHO05D014781 2.1e-100 370.5 329 60.5
DCAR_026566 Daucus carota HOM05D012205 ORTHO05D014781 1.2e-87 328.2 374 51.1
AUR62029714 Chenopodium quinoa HOM05D012205 ORTHO05D014781 7.6e-66 255.8 370 41.6
Ah.04g150360 Amaranthus hybridus HOM05D012205 ORTHO05D014781 7.1e-64 249.2 399 39.6
DCAR_004702 Daucus carota HOM05D012205 ORTHO05D014781 4.0e-43 180.3 376 34.0
EL10Ac7g17971 Beta vulgaris HOM05D012205 ORTHO05D014781 7.4e-37 159.5 335 33.7
Os01g0278600 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 6.7e-22 109.8 312 29.5
Os09g0436400 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 8.2e-20 102.8 281 28.5
TPR.G27630 Trifolium pratense HOM05D012205 ORTHO05D014781 3.8e-17 94.0 172 34.3
Rhsim09G0048400 Rhododendron simsii HOM05D006716 ORTHO05D008396 6.5e-17 93.2 347 25.1
Aqoxy4G01948 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 1.0e-14 85.9 308 26.3
Duzib114G0774 Durio zibethinus HOM05D006716 ORTHO05D008396 3.3e-13 80.9 338 26.0
Os09g0436700 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 3.3e-13 80.9 294 26.5
PSO478G4756 Papaver somniferum HOM05D006716 ORTHO05D008396 3.3e-13 80.9 322 25.5
vmacro15749 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 3.3e-13 80.9 247 31.6
Hma1.2p1_0310F.1_g120920 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 4.4e-13 80.5 307 28.0
Migut.N02017 Erythranthe guttata HOM05D005214 ORTHO05D005861 2.2e-12 78.2 325 26.5
Os05g0146100 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D298887 2.2e-12 78.2 273 27.8
PSO478G1238 Papaver somniferum HOM05D006716 ORTHO05D008396 2.8e-12 77.8 307 27.7
TWI31G0239 Tripterygium wilfordii HOM05D006716 ORTHO05D008396 2.8e-12 77.8 322 23.0
unitig_699.g19247 Utricularia gibba HOM05D005214 ORTHO05D005861 2.8e-12 77.8 285 27.7
vmacro12389 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 2.8e-12 77.8 203 29.1
Medtr7g113170 Medicago truncatula HOM05D005214 ORTHO05D005861 3.7e-12 77.4 296 26.0
Peaxi162Scf00663g00027 Petunia axillaris HOM05D006716 ORTHO05D008396 3.7e-12 77.4 301 25.2
Rhsim02G0098700 Rhododendron simsii HOM05D006716 ORTHO05D008396 4.8e-12 77.0 309 25.9
Migut.N01980 Erythranthe guttata HOM05D005214 ORTHO05D005861 6.3e-12 76.6 325 26.5
vmacro15746 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 1.1e-11 75.9 225 27.6
Lj9A35T20 Lonicera japonica HOM05D006716 ORTHO05D008396 1.4e-11 75.5 319 26.3
TPR.G33205 Trifolium pratense HOM05D005214 ORTHO05D005861 1.4e-11 75.5 300 24.3
CSS0050127 Camellia sinensis var. sinensis HOM05D006716 ORTHO05D008396 1.8e-11 75.1 149 34.2
TPR.G29566 Trifolium pratense HOM05D006716 ORTHO05D008396 2.4e-11 74.7 321 24.6
Ca_05806_v3 Cicer arietinum L. HOM05D005214 ORTHO05D005861 3.1e-11 74.3 297 25.9
CBR_g39175 Chara braunii HOM05D005214 ORTHO05D005861 4.1e-11 73.9 286 27.6
Os03g0221100 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D293029 5.3e-11 73.6 266 26.7
Peaxi162Scf00475g00124 Petunia axillaris HOM05D006716 ORTHO05D008396 9.1e-11 72.8 294 26.5
vmacro12392 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 9.1e-11 72.8 107 35.5
vmacro12393 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 1.2e-10 72.4 246 28.5
VMungo0540G0352 Vigna mungo HOM05D005214 ORTHO05D005861 1.2e-10 72.4 298 25.8
Duzib114G0505 Durio zibethinus HOM05D006716 ORTHO05D008396 1.6e-10 72.0 340 24.4
Ah.04g150350 Amaranthus hybridus HOM05D012205 ORTHO05D014781 2.0e-10 71.6 57 49.1
CANSAT54G2509 Cannabis sativa HOM05D005214 ORTHO05D005861 2.0e-10 71.6 297 24.6
Duzib114G0358 Durio zibethinus HOM05D006716 ORTHO05D008396 2.0e-10 71.6 272 27.9
Lalb_Chr18g0045711 Lupinus albus HOM05D005214 ORTHO05D005861 2.0e-10 71.6 297 24.2
Hund07090 Selenicereus undatus HOM05D005214 ORTHO05D005861 2.0e-10 71.6 295 25.1
Hma1.2p1_0003F.1_g003620 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 2.6e-10 71.2 345 25.5
Os08g0144400 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D293916 2.6e-10 71.2 262 27.9
Duzib114G0950 Durio zibethinus HOM05D006716 ORTHO05D008396 3.5e-10 70.9 224 29.0
Manes.08G119000 Manihot esculenta HOM05D005214 ORTHO05D005861 3.5e-10 70.9 286 25.2
MSTRG.27985 Avicennia marina HOM05D005214 ORTHO05D005861 5.9e-10 70.1 287 25.4
CsaV3_2G006580 Cucumis sativus L. HOM05D005214 ORTHO05D005861 5.9e-10 70.1 287 24.4
Nn8g40789 Nelumbo nucifera HOM05D005214 ORTHO05D005861 5.9e-10 70.1 293 25.3
Cc00_g10460 Coffea canephora HOM05D005214 ORTHO05D005861 7.7e-10 69.7 136 31.6
Rhsim02G0098800 Rhododendron simsii HOM05D006716 ORTHO05D008396 7.7e-10 69.7 249 25.7
MD12G1215600 Malus domestica HOM05D005214 ORTHO05D005861 1.0e-09 69.3 140 30.0
Peaxi162Scf00168g01523 Petunia axillaris HOM05D006716 ORTHO05D008396 1.0e-09 69.3 292 25.7
Sabra13G0021100 Salix brachista HOM05D005214 ORTHO05D005861 1.0e-09 69.3 286 24.8
Aqoxy2G03015 Aquilegia oxysepala HOM05D005214 ORTHO05D005861 1.3e-09 68.9 282 25.9
Duzib128G1190 Durio zibethinus HOM05D005214 ORTHO05D005861 1.3e-09 68.9 286 25.2
Os03g0663100 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D296914 1.3e-09 68.9 284 24.3
Os07g0665700 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 1.3e-09 68.9 216 25.5
PSO017G6103 Papaver somniferum HOM05D006716 ORTHO05D008396 1.3e-09 68.9 169 28.4
Potri.018G001500 Populus trichocarpa HOM05D006716 ORTHO05D008396 1.3e-09 68.9 214 26.6
THA.LOC104802800 Tarenaya hassleriana HOM05D005214 ORTHO05D005861 1.3e-09 68.9 287 24.7
Actinidia05683 Actinidia chinensis HOM05D005214 ORTHO05D005861 1.7e-09 68.6 325 24.0
ATR0743G060 Amborella trichopoda HOM05D005214 ORTHO05D005861 1.7e-09 68.6 140 32.1
AL6G39370 Arabidopsis lyrata HOM05D005214 ORTHO05D005861 1.7e-09 68.6 176 28.4
EL10Ac4g09934 Beta vulgaris HOM05D005214 ORTHO05D005861 1.7e-09 68.6 295 25.4
Thhalv10004245m.g Eutrema salsugineum HOM05D005214 ORTHO05D005861 1.7e-09 68.6 176 29.0
Hma1.2p1_0154F.1_g068000 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 1.7e-09 68.6 273 26.0
QL03p021693 Quercus lobata HOM05D005214 ORTHO05D005861 1.7e-09 68.6 286 23.8
Carub.0006s2493 Capsella rubella HOM05D005214 ORTHO05D005861 2.2e-09 68.2 176 28.4
Gorai.004G240000 Gossypium raimondii HOM05D005214 ORTHO05D005861 2.2e-09 68.2 286 24.5
Potri.018G001301 Populus trichocarpa HOM05D006716 ORTHO05D008396 2.2e-09 68.2 191 31.4
Eucgr.H04504 Eucalyptus grandis HOM05D005214 ORTHO05D005861 2.9e-09 67.8 286 24.5
Gohir.A08G209100 Gossypium hirsutum HOM05D005214 ORTHO05D005861 2.9e-09 67.8 286 24.1
Potri.018G001550 Populus trichocarpa HOM05D006716 ORTHO05D008396 2.9e-09 67.8 266 28.2
BcaNung04538 Brassica carinata HOM05D005214 ORTHO05D005861 3.8e-09 67.4 189 27.5
Cfa006617 Carpinus fangiana HOM05D005214 ORTHO05D005861 3.8e-09 67.4 287 24.4
AT5G27660 Arabidopsis thaliana HOM05D005214 ORTHO05D005861 5.0e-09 67.0 176 28.4
arahy.Tifrunner.gnm1.ann1.0P9F65 Arachis hypogaea HOM05D005214 ORTHO05D005861 5.0e-09 67.0 294 23.1
ClCG02G015500 Citrullus lanatus HOM05D005214 ORTHO05D005861 5.0e-09 67.0 140 30.7
MELO3C004228.2 Cucumis melo HOM05D005214 ORTHO05D005861 5.0e-09 67.0 140 30.7
Gohir.D08G226000 Gossypium hirsutum HOM05D005214 ORTHO05D005861 5.0e-09 67.0 140 28.6
MD04G1201900 Malus domestica HOM05D005214 ORTHO05D005861 5.0e-09 67.0 140 28.6
Prupe.6G322200 Prunus persica HOM05D005214 ORTHO05D005861 5.0e-09 67.0 140 29.3
vmacro04966 Vaccinium macrocarpon HOM05D005214 ORTHO05D005861 5.0e-09 67.0 291 25.4
arahy.Tifrunner.gnm1.ann1.P1V9IM Arachis hypogaea HOM05D005214 ORTHO05D005861 6.5e-09 66.6 294 23.1
CDE09G0722 Ceratophyllum demersum HOM05D005214 ORTHO05D005861 6.5e-09 66.6 292 23.3
QL03p011667 Quercus lobata HOM05D005214 ORTHO05D005861 6.5e-09 66.6 286 23.8
SalBow3G0885 Salvia bowleyana HOM05D005214 ORTHO05D005861 6.5e-09 66.6 287 24.4
Haze_04156 Corylus avellana HOM05D005214 ORTHO05D007291 8.5e-09 66.2 140 29.3
Sed0006034 Sechium edule HOM05D005214 ORTHO05D005861 8.5e-09 66.2 286 23.1
Thecc.05G311500 Theobroma cacao HOM05D005214 ORTHO05D005861 8.5e-09 66.2 287 24.0
vmacro15747 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 8.5e-09 66.2 217 27.2
AagrBONN_evm.TU.Sc2ySwM_228.3758 Anthoceros agrestis HOM05D005214 ORTHO05D005861 1.1e-08 65.9 273 24.9
FAN02G3954 Fragaria x ananassa HOM05D005214 ORTHO05D005861 1.1e-08 65.9 140 28.6
CARHR186180 Cardamine hirsuta HOM05D005214 ORTHO05D005861 1.5e-08 65.5 140 29.3
Lj1g0009363 Lotus japonicus HOM05D005214 ORTHO05D005861 1.5e-08 65.5 136 29.4
MBI07_g30867_MAGBIO Magnolia biondii HOM05D005214 ORTHO05D005861 1.5e-08 65.5 291 23.4
BcaNung04541 Brassica carinata HOM05D005214 ORTHO05D005861 1.9e-08 65.1 140 30.7
CiPaw.07G020400 Carya illinoinensis HOM05D005214 ORTHO05D005861 1.9e-08 65.1 140 28.6
DCAR_002644 Daucus carota HOM05D006716 ORTHO05D008396 1.9e-08 65.1 199 31.2
Dinv40313 Davidia involucrata HOM05D005214 ORTHO05D005861 1.9e-08 65.1 296 24.0
CAN.G497.65 Capsicum annuum HOM05D006716 ORTHO05D008396 2.5e-08 64.7 316 26.3
Sp2g20820 Schrenkiella parvula HOM05D005214 ORTHO05D005861 2.5e-08 64.7 140 29.3
FvH4_6g06420 Fragaria vesca HOM05D005214 ORTHO05D005861 3.2e-08 64.3 140 27.9
Hma1.2p1_1212F.1_g267370 Hydrangea macrophylla HOM05D005214 ORTHO05D005861 3.2e-08 64.3 177 25.4
Potri.013G018300 Populus trichocarpa HOM05D005214 ORTHO05D005861 3.2e-08 64.3 140 30.0
Cpa.g.sc48.81 Carica papaya HOM05D005214 ORTHO05D005861 5.5e-08 63.5 140 29.3
AUR62000783 Chenopodium quinoa HOM05D005214 ORTHO05D005861 5.5e-08 63.5 298 24.5
ECA236G2130 Erigeron canadensis HOM05D005214 ORTHO05D005861 5.5e-08 63.5 140 27.9
Glyma.19G234200 Glycine max HOM05D005214 ORTHO05D005861 5.5e-08 63.5 295 24.1
Lj9A119G25 Lonicera japonica HOM05D005214 ORTHO05D005861 5.5e-08 63.5 133 31.6
RcHm_v2.0_Chr3g0455481 Rosa chinensis HOM05D005214 ORTHO05D005861 5.5e-08 63.5 140 27.1
GSVIVG01031122001 Vitis vinifera HOM05D005214 ORTHO05D005861 5.5e-08 63.5 140 29.3
DCAR_022150 Daucus carota HOM05D005214 ORTHO05D005861 7.2e-08 63.2 140 29.3
FvH4_7g05300 Fragaria vesca HOM05D005214 ORTHO05D005861 7.2e-08 63.2 140 28.6
Psat0s545g0120 Pisum sativum HOM05D005214 ORTHO05D005861 7.2e-08 63.2 140 27.9
TWI12G0218 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 7.2e-08 63.2 140 30.0
Nitab4.5_0001339g0090 Nicotiana tabacum HOM05D006716 ORTHO05D008396 9.4e-08 62.8 304 24.7
Os05g0158400 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D301236 9.4e-08 62.8 253 24.1
Rhsim07G0026700 Rhododendron simsii HOM05D006716 ORTHO05D008396 9.4e-08 62.8 134 27.6
Os05g0161400 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D299027 1.2e-07 62.4 293 23.2
Phvul.006G090500 Phaseolus vulgaris HOM05D005214 ORTHO05D005861 1.2e-07 62.4 232 25.0
SMO364G0425 Selaginella moellendorffii HOM05D005214 ORTHO05D005861 1.2e-07 62.4 138 30.4
Os11g0246600 Oryza sativa ssp. japonica HOM05D005214 ORTHO05D005861 1.6e-07 62.0 159 29.6
HanXRQChr11g0339491 Helianthus annuus HOM05D005214 ORTHO05D005861 2.1e-07 61.6 140 27.1
TPR.G15037 Trifolium pratense HOM05D006716 ORTHO05D008396 2.1e-07 61.6 249 25.3
TWI12G0067 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 2.7e-07 61.2 140 31.4
Lj9A35T22 Lonicera japonica HOM05D006716 ORTHO05D008396 3.6e-07 60.8 75 37.3
CSS0000343 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 4.7e-07 60.5 138 25.4
PSO675G4608 Papaver somniferum HOM05D005214 ORTHO05D005861 4.7e-07 60.5 133 30.8
TPR.G40231 Trifolium pratense HOM05D006716 ORTHO05D008396 4.7e-07 60.5 357 20.4
Medtr5g464730 Medicago truncatula HOM05D006716 ORTHO05D008396 6.1e-07 60.1 328 22.9
PSO541G2582 Papaver somniferum HOM05D005214 ORTHO05D005861 8.0e-07 59.7 140 29.3
Mapoly0047s0084 Marchantia polymorpha HOM05D005214 ORTHO05D005861 1.0e-06 59.3 287 25.8
Aa31LG11G9400 Aethionema arabicum HOM05D005214 ORTHO05D005861 1.4e-06 58.9 132 28.8
CAN.G619.10 Capsicum annuum HOM05D005214 ORTHO05D005861 1.4e-06 58.9 140 27.9
FAN05G5708 Fragaria x ananassa HOM05D005214 ORTHO05D005861 1.4e-06 58.9 146 27.4
Nitab4.5_0002144g0030 Nicotiana tabacum HOM05D005214 ORTHO05D005861 1.4e-06 58.9 176 26.1
Pp3c6_6410 Physcomitrium patens HOM05D005214 ORTHO05D005861 1.8e-06 58.5 288 25.3
Os01g0776500 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 2.3e-06 58.2 221 25.8
Sopen02g027470 Solanum pennellii HOM05D006716 ORTHO05D008396 2.3e-06 58.2 302 24.8
TWI12G1447 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 2.3e-06 58.2 286 25.5
Ciclev10001167m.g Citrus clementina HOM05D005214 ORTHO05D005861 3.0e-06 57.8 140 26.4
Nitab4.5_0000524g0010 Nicotiana tabacum HOM05D005214 ORTHO05D005861 3.0e-06 57.8 176 25.6
Zm00001eb168260 Zea mays HOM05D005214 ORTHO05D005861 3.0e-06 57.8 140 25.0
Os03g0661800 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D299399 4.0e-06 57.4 297 22.9
TPR.G36640 Trifolium pratense HOM05D006716 ORTHO05D008396 4.0e-06 57.4 270 22.6
FAN17G2752 Fragaria x ananassa HOM05D005214 ORTHO05D005861 5.2e-06 57.0 131 29.8
Ah.10g035290 Amaranthus hybridus HOM05D006716 ORTHO05D008396 6.7e-06 56.6 74 39.2
FAN14G2055 Fragaria x ananassa HOM05D005214 ORTHO05D005861 6.7e-06 56.6 140 27.1
Oeu040762.1 Olea europaea HOM05D005214 ORTHO05D005861 6.7e-06 56.6 98 31.6
FvH4_6g06410 Fragaria vesca HOM05D005214 ORTHO05D005861 8.8e-06 56.2 140 27.1
Solyc02g082720.4 Solanum lycopersicum HOM05D006716 ORTHO05D008396 8.8e-06 56.2 302 24.5
SGA_v2.0_scaffold80G25806 Striga asiatica HOM05D005214 ORTHO05D005861 8.8e-06 56.2 164 25.6


User provided reference genes

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