Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 1.1e-87 326.6 163 100.0
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 7.9e-75 283.9 160 85.0
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 1.5e-73 279.6 163 84.7
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 1.4e-71 273.1 159 83.6
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 5.9e-70 267.7 160 81.9
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 5.9e-70 267.7 160 81.9
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 1.1e-68 263.5 159 81.8
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.1e-68 263.5 160 78.8
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.4e-68 263.1 159 79.2
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 1.4e-68 263.1 159 79.2
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.4e-68 263.1 160 80.0
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 1.9e-68 262.7 163 77.9
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 2.5e-68 262.3 163 78.5
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 3.2e-68 261.9 159 81.8
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 4.2e-68 261.5 158 80.4
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 4.2e-68 261.5 159 78.6
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 4.2e-68 261.5 159 78.6
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 4.2e-68 261.5 159 78.6
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 9.4e-68 260.4 159 79.9
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 1.6e-67 259.6 163 76.7
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.6e-67 259.6 159 80.5
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 1.6e-67 259.6 160 78.8
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 4.6e-67 258.1 159 78.6
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 2.3e-66 255.8 159 75.5
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 2.3e-66 255.8 156 79.5
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 2.3e-66 255.8 156 79.5
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 2.3e-66 255.8 159 78.6
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 3.0e-66 255.4 160 78.1
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 3.9e-66 255.0 160 75.6
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 3.9e-66 255.0 163 77.9
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 5.1e-66 254.6 163 77.3
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 5.1e-66 254.6 163 77.9
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 6.7e-66 254.2 160 75.0
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 8.8e-66 253.8 163 75.5
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 8.8e-66 253.8 163 75.5
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 8.8e-66 253.8 163 76.1
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 1.1e-65 253.4 163 77.3
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.1e-65 253.4 156 78.8
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 1.5e-65 253.1 159 74.8
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 2.0e-65 252.7 160 76.2
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 3.3e-65 251.9 159 75.5
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 3.3e-65 251.9 159 74.8
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 3.3e-65 251.9 156 78.8
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 3.3e-65 251.9 160 74.4
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 7.4e-65 250.8 164 76.8
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 9.7e-65 250.4 159 74.8
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 9.7e-65 250.4 158 76.6
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 1.3e-64 250.0 158 79.1
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 1.3e-64 250.0 159 76.7
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 1.3e-64 250.0 160 75.0
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 1.7e-64 249.6 158 75.9
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 2.2e-64 249.2 141 84.4
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 2.8e-64 248.8 141 83.7
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 2.8e-64 248.8 159 75.5
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 3.7e-64 248.4 158 75.3
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 3.7e-64 248.4 155 76.1
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 4.8e-64 248.1 163 72.4
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 4.8e-64 248.1 160 75.0
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 4.8e-64 248.1 159 73.6
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 6.3e-64 247.7 161 73.3
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 1.1e-63 246.9 163 75.5
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 1.8e-63 246.1 160 74.4
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 1.8e-63 246.1 159 73.0
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 1.8e-63 246.1 160 73.1
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 2.4e-63 245.7 163 74.8
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 3.1e-63 245.4 163 72.4
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 5.3e-63 244.6 160 73.8
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 5.3e-63 244.6 163 72.4
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 6.9e-63 244.2 158 73.4
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 9.1e-63 243.8 158 74.7
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 1.2e-62 243.4 169 72.8
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 1.2e-62 243.4 155 74.8
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 1.2e-62 243.4 157 75.2
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 1.2e-62 243.4 159 71.1
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 2.6e-62 242.3 187 66.8
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 3.4e-62 241.9 159 70.4
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 4.5e-62 241.5 157 73.2
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 4.5e-62 241.5 160 72.5
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 4.5e-62 241.5 163 71.8
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 5.9e-62 241.1 141 80.9
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 5.9e-62 241.1 156 75.0
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 5.9e-62 241.1 182 67.6
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 5.9e-62 241.1 156 73.1
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 1.0e-61 240.4 156 72.4
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 1.3e-61 240.0 158 74.1
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 1.3e-61 240.0 157 76.4
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 2.2e-61 239.2 151 80.1
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 2.9e-61 238.8 176 67.6
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 5.0e-61 238.0 159 70.4
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 6.5e-61 237.7 158 71.5
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 8.5e-61 237.3 158 72.2
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 1.1e-60 236.9 137 80.3
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 2.5e-60 235.7 137 78.8
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 7.2e-60 234.2 160 71.2
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 1.2e-59 233.4 160 73.8
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 1.6e-59 233.0 139 77.0
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 2.1e-59 232.6 163 69.9
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 2.1e-59 232.6 156 73.1
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 6.1e-59 231.1 141 75.9
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 1.8e-58 229.6 163 69.3
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 3.9e-58 228.4 154 70.8
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 6.7e-58 227.6 163 69.3
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 2.6e-57 225.7 163 68.7
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 3.7e-56 221.9 163 68.1
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 1.1e-55 220.3 161 67.7
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 1.1e-55 220.3 161 67.7
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 1.4e-55 219.9 163 67.5
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 1.8e-55 219.5 163 67.5
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 1.8e-55 219.5 162 67.3
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 1.8e-55 219.5 163 67.5
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 3.1e-55 218.8 163 66.9
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 7.0e-55 217.6 141 73.8
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 9.1e-55 217.2 141 73.8
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 1.5e-54 216.5 141 73.0
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 2.6e-54 215.7 163 66.9
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 3.8e-53 211.8 163 66.3
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 3.6e-51 205.3 154 66.2
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 1.8e-50 203.0 204 52.5
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 1.5e-49 199.9 160 61.9
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 8.2e-48 194.1 157 60.5
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 1.1e-47 193.7 159 64.8
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 3.8e-45 185.3 130 67.7
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 8.0e-43 177.6 121 66.9
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 1.7e-40 169.9 112 68.8
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 3.5e-38 162.2 124 65.3
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 3.2e-36 155.6 93 80.6
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 6.1e-35 151.4 159 50.3
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 8.0e-35 151.0 93 78.5
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 1.2e-33 147.1 139 53.2
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 6.3e-32 141.4 99 68.7
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 7.0e-31 137.9 87 78.2
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 6.1e-27 124.8 144 44.4
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 3.0e-26 122.5 81 70.4
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 9.8e-25 117.5 128 49.2
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 2.0e-22 109.8 128 46.1
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 1.7e-13 80.1 50 78.0
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.1e-12 77.4 48 72.9
Ca_29159_v3 Cicer arietinum L. HOM05D005761 ORTHO05D147516 7.8e-06 54.7 102 28.4


User provided reference genes

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