Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 5.2e-105 384.4 196 100.0
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 2.2e-79 299.3 190 80.5
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 2.2e-79 299.3 190 81.1
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 4.9e-79 298.1 191 81.2
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 1.6e-77 293.1 188 79.3
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 4.6e-77 291.6 188 79.8
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 4.6e-77 291.6 189 76.7
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 6.0e-77 291.2 189 77.8
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 1.0e-76 290.4 190 76.8
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 2.3e-76 289.3 190 79.5
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 3.0e-76 288.9 189 77.8
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 6.6e-76 287.7 187 76.5
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 6.6e-76 287.7 190 76.3
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 6.6e-76 287.7 189 77.2
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 8.6e-76 287.3 198 74.2
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 1.1e-75 287.0 190 76.3
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 1.5e-75 286.6 190 75.8
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 1.9e-75 286.2 186 77.4
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 4.3e-75 285.0 190 77.4
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 7.3e-75 284.3 192 73.4
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.2e-74 283.5 187 77.0
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 1.2e-74 283.5 192 76.0
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 1.6e-74 283.1 188 77.7
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 2.1e-74 282.7 193 73.6
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 2.8e-74 282.3 191 77.5
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 4.7e-74 281.6 202 72.3
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 1.1e-73 280.4 190 75.3
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 1.1e-73 280.4 188 75.0
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.4e-73 280.0 195 73.8
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.8e-73 279.6 193 74.6
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 1.8e-73 279.6 193 73.6
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.3e-73 279.3 192 75.5
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 3.1e-73 278.9 191 74.9
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 3.1e-73 278.9 191 74.3
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 4.0e-73 278.5 189 73.5
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 5.2e-73 278.1 190 74.7
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 5.2e-73 278.1 191 71.7
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.2e-72 276.9 186 76.3
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 2.0e-72 276.2 190 73.7
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 2.0e-72 276.2 193 74.1
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 2.6e-72 275.8 187 75.4
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 5.8e-72 274.6 195 72.3
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 1.7e-71 273.1 183 77.0
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.2e-71 272.7 186 72.6
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 2.2e-71 272.7 190 73.7
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.9e-71 272.3 186 74.7
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 4.9e-71 271.6 190 73.2
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 6.4e-71 271.2 193 71.5
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 1.1e-70 270.4 190 72.6
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.4e-70 269.2 189 70.9
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 4.1e-70 268.5 183 73.2
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 7.0e-70 267.7 187 73.3
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 9.2e-70 267.3 190 71.1
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 2.7e-69 265.8 173 79.8
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 3.5e-69 265.4 191 70.2
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 4.6e-69 265.0 194 70.1
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 1.0e-68 263.8 171 79.5
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 1.7e-68 263.1 189 70.4
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 2.3e-68 262.7 189 72.0
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 2.3e-68 262.7 186 73.1
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 6.6e-68 261.2 188 73.4
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 6.6e-68 261.2 188 70.2
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.1e-67 260.4 187 70.1
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 1.5e-67 260.0 182 74.7
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 2.5e-67 259.2 189 70.4
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 2.5e-67 259.2 187 71.7
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 2.5e-67 259.2 167 78.4
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 3.3e-67 258.8 189 68.3
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 4.3e-67 258.5 168 78.0
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 5.6e-67 258.1 189 69.3
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 1.2e-66 256.9 167 77.8
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 2.1e-66 256.1 166 77.7
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 3.6e-66 255.4 189 68.8
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 3.6e-66 255.4 185 71.4
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 6.2e-66 254.6 188 68.1
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 6.2e-66 254.6 167 76.6
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 6.2e-66 254.6 167 76.0
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 6.2e-66 254.6 196 70.4
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 6.2e-66 254.6 192 69.3
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 6.2e-66 254.6 180 72.8
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 1.1e-65 253.8 191 68.1
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 1.8e-65 253.1 189 67.7
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 8.9e-65 250.8 166 75.3
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 8.9e-65 250.8 190 67.9
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 1.5e-64 250.0 171 75.4
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.6e-64 249.2 187 69.0
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 3.4e-64 248.8 198 65.7
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 5.8e-64 248.1 172 70.9
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 7.5e-64 247.7 190 66.8
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 9.9e-64 247.3 180 71.7
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.3e-63 246.9 187 69.0
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 2.2e-63 246.1 200 64.0
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 8.3e-63 244.2 194 69.6
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.1e-62 243.8 176 71.0
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.1e-62 243.8 168 75.0
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 7.1e-62 241.1 164 75.0
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 1.6e-61 240.0 190 62.6
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.6e-61 240.0 166 72.3
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.6e-61 240.0 190 66.3
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 3.5e-61 238.8 185 68.6
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 2.5e-59 232.6 188 60.6
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 4.3e-59 231.9 187 65.2
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 5.6e-59 231.5 188 62.8
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 5.6e-59 231.5 189 61.4
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 4.7e-58 228.4 169 69.2
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 8.1e-58 227.6 171 67.8
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 2.4e-57 226.1 169 71.0
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 2.4e-57 226.1 139 79.1
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 6.8e-57 224.6 166 72.3
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 6.8e-57 224.6 140 76.4
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 8.9e-57 224.2 164 69.5
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 2.6e-56 222.6 187 64.2
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 3.8e-55 218.8 187 62.6
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 4.9e-55 218.4 179 65.4
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 6.4e-55 218.0 190 61.6
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 1.6e-53 213.4 187 58.3
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.5e-53 212.2 185 63.8
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.5e-53 212.2 168 66.1
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 3.5e-53 212.2 186 62.4
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 1.9e-51 206.5 186 58.1
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 1.6e-50 203.4 195 53.3
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 3.4e-48 195.7 118 82.2
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 4.4e-48 195.3 187 58.8
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.3e-47 193.7 186 55.9
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 5.4e-46 188.3 118 80.5
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 2.3e-44 183.0 192 54.7
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.1e-43 180.6 189 53.4
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 1.9e-43 179.9 129 69.8
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 2.2e-39 166.4 129 62.8
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 5.4e-38 161.8 120 67.5
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 5.4e-38 161.8 115 72.2
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 2.1e-37 159.8 183 46.4
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 4.3e-35 152.1 166 51.8
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 1.2e-24 117.5 87 69.0
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 1.3e-15 87.4 60 70.0
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 2.1e-13 80.1 56 69.6
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 3.3e-11 72.8 50 70.0
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 1.1e-06 57.8 176 32.4
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 4.2e-06 55.8 51 60.8
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 7.2e-06 55.1 66 48.5


User provided reference genes

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