Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016087 Daucus carota HOM05D002316 ORTHO05D002280 2.5e-226 788.5 418 100.0
DCAR_022638 Daucus carota HOM05D002316 ORTHO05D002280 3.3e-141 505.8 421 69.1
Dinv37816 Davidia involucrata HOM05D002316 ORTHO05D002280 5.8e-106 388.7 429 57.3
Lj5A28T49 Lonicera japonica HOM05D002316 ORTHO05D002280 1.0e-97 361.3 422 55.2
Dinv20376 Davidia involucrata HOM05D002316 ORTHO05D002280 1.7e-97 360.5 432 55.3
GSVIVG01016660001 Vitis vinifera HOM05D002316 ORTHO05D002280 2.9e-97 359.8 431 54.8
CSS0017215 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 3.2e-96 356.3 430 54.0
Actinidia21843 Actinidia chinensis HOM05D002316 ORTHO05D002280 5.1e-94 349.0 429 53.4
Atru.chr1.4173 Acer truncatum HOM05D002316 ORTHO05D002280 1.0e-89 334.7 424 51.2
Ciclev10025233m.g Citrus clementina HOM05D002316 ORTHO05D002280 3.6e-87 326.2 429 50.8
Manes.04G151600 Manihot esculenta HOM05D002316 ORTHO05D002280 4.6e-87 325.9 426 49.3
TWI14G0140 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 4.6e-87 325.9 433 49.4
QL05p001077 Quercus lobata HOM05D002316 ORTHO05D002280 1.8e-86 323.9 431 50.1
Nitab4.5_0006966g0030 Nicotiana tabacum HOM05D002316 ORTHO05D002280 5.1e-86 322.4 426 50.5
Thecc.06G131100 Theobroma cacao HOM05D002316 ORTHO05D002280 5.1e-86 322.4 430 49.8
Rhsim08G0245400 Rhododendron simsii HOM05D002316 ORTHO05D002280 8.8e-86 321.6 433 50.3
Gohir.D10G050800 Gossypium hirsutum HOM05D002316 ORTHO05D002280 1.1e-85 321.2 427 49.6
QL05p000933 Quercus lobata HOM05D002316 ORTHO05D002280 2.0e-85 320.5 429 50.1
Cpa.g.sc25.201 Carica papaya HOM05D002316 ORTHO05D002280 3.3e-85 319.7 426 49.3
Nitab4.5_0006338g0020 Nicotiana tabacum HOM05D002316 ORTHO05D002280 1.3e-84 317.8 423 50.1
Gohir.A05G142100 Gossypium hirsutum HOM05D002316 ORTHO05D002280 1.7e-84 317.4 427 49.4
Gorai.009G148300 Gossypium raimondii HOM05D002316 ORTHO05D002280 3.7e-84 316.2 428 48.6
Gohir.A10G050200 Gossypium hirsutum HOM05D002316 ORTHO05D002280 8.2e-84 315.1 426 49.1
COL.COLO4_30878 Corchorus olitorius HOM05D002316 ORTHO05D002280 1.4e-83 314.3 431 49.7
CAN.G790.53 Capsicum annuum HOM05D002316 ORTHO05D002280 4.1e-83 312.8 428 49.1
Duzib235G0584 Durio zibethinus HOM05D002316 ORTHO05D002280 6.9e-83 312.0 431 47.8
Peaxi162Scf00038g02328 Petunia axillaris HOM05D002316 ORTHO05D002280 9.1e-83 311.6 429 49.2
Sabra03G0044000 Salix brachista HOM05D002316 ORTHO05D002280 7.7e-82 308.5 421 49.9
Duzib192G1048 Durio zibethinus HOM05D002316 ORTHO05D002280 1.3e-81 307.8 424 47.9
Actinidia24418 Actinidia chinensis HOM05D002316 ORTHO05D002280 2.2e-81 307.0 428 49.1
Potri.003G073400 Populus trichocarpa HOM05D002316 ORTHO05D002280 2.2e-81 307.0 429 48.0
Potri.001G161900 Populus trichocarpa HOM05D002316 ORTHO05D002280 3.8e-81 306.2 429 47.1
Migut.I01139 Erythranthe guttata HOM05D002316 ORTHO05D002280 5.0e-81 305.8 430 46.3
CiPaw.02G130400 Carya illinoinensis HOM05D002316 ORTHO05D002280 6.5e-81 305.4 431 47.8
Sabra01G0130600 Salix brachista HOM05D002316 ORTHO05D002280 1.9e-80 303.9 427 46.8
CANSAT56G3763 Cannabis sativa HOM05D002316 ORTHO05D002280 3.2e-80 303.1 430 46.7
vmacro18716 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 5.5e-80 302.4 445 46.5
Solyc03g123700.4 Solanum lycopersicum HOM05D002316 ORTHO05D002280 7.2e-80 302.0 428 47.2
MBI19_g32879_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 1.6e-79 300.8 435 49.2
Cc04_g00630 Coffea canephora HOM05D002316 ORTHO05D002280 6.1e-79 298.9 440 45.9
Sed0002975 Sechium edule HOM05D002316 ORTHO05D002280 6.1e-79 298.9 433 47.1
Eucgr.J02589 Eucalyptus grandis HOM05D002316 ORTHO05D002280 1.8e-78 297.4 428 47.7
Sopen03g041470 Solanum pennellii HOM05D002316 ORTHO05D002280 3.9e-78 296.2 426 46.2
PGSC0003DMG400009152 Solanum tuberosum HOM05D002316 ORTHO05D002280 5.2e-78 295.8 429 46.2
Nn6g35747 Nelumbo nucifera HOM05D002316 ORTHO05D002280 1.5e-77 294.3 430 47.7
Gohir.D05G144400 Gossypium hirsutum HOM05D002316 ORTHO05D002280 7.4e-77 292.0 244 68.0
TAR375G0959 Trochodendron aralioides HOM05D002316 ORTHO05D002280 7.4e-77 292.0 422 48.3
TWI59G0933 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 3.7e-76 289.7 426 48.6
Sc15g0000830 Simmondsia chinensis HOM05D002316 ORTHO05D002280 1.1e-75 288.1 421 46.6
ClCG07G014240 Citrullus lanatus HOM05D002316 ORTHO05D002280 7.0e-75 285.4 429 47.1
Cfa003455 Carpinus fangiana HOM05D002316 ORTHO05D002280 1.6e-74 284.3 424 47.6
PSO135G1018 Papaver somniferum HOM05D002316 ORTHO05D002280 2.6e-74 283.5 430 45.3
Gorai.011G054500 Gossypium raimondii HOM05D002316 ORTHO05D002280 7.7e-74 282.0 425 46.6
Oeu013438.1 Olea europaea HOM05D002316 ORTHO05D002280 1.0e-73 281.6 433 47.1
PGR102G1833 Punica granatum HOM05D002316 ORTHO05D002280 1.7e-73 280.8 427 46.8
PSO724G1377 Papaver somniferum HOM05D002316 ORTHO05D002280 1.5e-72 277.7 429 45.2
VMungo1309G0979 Vigna mungo HOM05D002316 ORTHO05D002280 1.2e-71 274.6 424 46.0
CsaV3_3G031100 Cucumis sativus L. HOM05D002316 ORTHO05D002280 2.1e-71 273.9 431 44.5
Aqoxy7G00923 Aquilegia oxysepala HOM05D002316 ORTHO05D002280 4.7e-71 272.7 424 46.0
MD17G1154900 Malus domestica HOM05D002316 ORTHO05D002280 6.1e-71 272.3 484 42.4
Glyma.03G262900 Glycine max HOM05D002316 ORTHO05D002280 8.0e-71 271.9 420 46.2
Prupe.3G030400 Prunus persica HOM05D002316 ORTHO05D002280 1.0e-70 271.6 488 41.0
AUR62007994 Chenopodium quinoa HOM05D002316 ORTHO05D002280 5.2e-70 269.2 421 46.6
AL1G62470 Arabidopsis lyrata HOM05D002316 ORTHO05D002280 6.7e-70 268.9 432 43.8
AUR62003176 Chenopodium quinoa HOM05D002316 ORTHO05D002280 1.5e-69 267.7 423 46.6
FAN14G1755 Fragaria x ananassa HOM05D002316 ORTHO05D002280 1.5e-69 267.7 299 56.5
FAN14G3860 Fragaria x ananassa HOM05D002316 ORTHO05D002280 1.5e-69 267.7 296 56.8
MBI13_g41710_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 2.0e-69 267.3 434 43.5
FAN05G5339 Fragaria x ananassa HOM05D002316 ORTHO05D002280 2.6e-69 266.9 296 56.4
FAN09G2036 Fragaria x ananassa HOM05D002316 ORTHO05D002280 3.3e-69 266.5 296 56.1
FAN02G0802 Fragaria x ananassa HOM05D002316 ORTHO05D002280 4.4e-69 266.2 296 56.4
Sp1g40300 Schrenkiella parvula HOM05D002316 ORTHO05D002280 7.5e-69 265.4 438 44.7
Carub.0001s4305 Capsella rubella HOM05D002316 ORTHO05D002280 1.7e-68 264.2 438 45.0
Phvul.009G261100 Phaseolus vulgaris HOM05D002316 ORTHO05D002280 2.8e-68 263.5 426 43.0
CiPaw.01G210800 Carya illinoinensis HOM05D002316 ORTHO05D002280 3.7e-68 263.1 426 45.1
MELO3C026660.2 Cucumis melo HOM05D002316 ORTHO05D002280 6.3e-68 262.3 430 43.5
FvH4_6g35990 Fragaria vesca HOM05D002316 ORTHO05D002280 8.2e-68 261.9 275 58.9
EL10Ac6g14924 Beta vulgaris HOM05D002316 ORTHO05D002280 1.4e-67 261.2 447 42.3
Glyma.19G262000 Glycine max HOM05D002316 ORTHO05D002280 1.4e-67 261.2 424 44.8
MD09G1172000 Malus domestica HOM05D002316 ORTHO05D002280 3.1e-67 260.0 477 39.8
CARHR044090 Cardamine hirsuta HOM05D002316 ORTHO05D002280 9.1e-67 258.5 426 43.7
BraA06t23311Z Brassica rapa HOM05D002316 ORTHO05D002280 4.5e-66 256.1 421 43.7
arahy.Tifrunner.gnm1.ann1.JMV1FI Arachis hypogaea HOM05D002316 ORTHO05D002280 5.9e-66 255.8 425 44.0
Lj1g0006356 Lotus japonicus HOM05D002316 ORTHO05D002280 5.9e-66 255.8 422 43.4
A06p00770 Brassica napus HOM05D002316 ORTHO05D002280 7.7e-66 255.4 421 43.7
Thhalv10011340m.g Eutrema salsugineum HOM05D002316 ORTHO05D002280 7.7e-66 255.4 432 42.8
ATR0053G043 Amborella trichopoda HOM05D002316 ORTHO05D002280 1.0e-65 255.0 314 50.0
THA.LOC104810398 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 1.3e-65 254.6 438 42.7
arahy.Tifrunner.gnm1.ann1.82DMKZ Arachis hypogaea HOM05D002316 ORTHO05D002280 2.2e-65 253.8 296 55.1
BcaB02g10892 Brassica carinata HOM05D002316 ORTHO05D002280 2.9e-65 253.4 432 41.9
BcaB07g33301 Brassica carinata HOM05D002316 ORTHO05D002280 2.9e-65 253.4 425 43.5
unitig_32.g10996 Utricularia gibba HOM05D002316 ORTHO05D002280 5.0e-65 252.7 243 59.7
THA.LOC104815594 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 8.5e-65 251.9 423 42.6
C06p09560 Brassica napus HOM05D002316 ORTHO05D002280 2.5e-64 250.4 421 42.3
BolC6t36030H Brassica oleracea HOM05D002316 ORTHO05D002280 2.5e-64 250.4 421 42.3
Aa31LG10G1510 Aethionema arabicum HOM05D002316 ORTHO05D002280 3.2e-64 250.0 419 40.3
Ah.15g094840 Amaranthus hybridus HOM05D002316 ORTHO05D002280 4.2e-64 249.6 242 62.0
BcaC08g43557 Brassica carinata HOM05D002316 ORTHO05D002280 7.2e-64 248.8 421 42.3
Ah.03g139400 Amaranthus hybridus HOM05D002316 ORTHO05D002280 1.6e-63 247.7 432 41.9
Migut.D00907 Erythranthe guttata HOM05D002316 ORTHO05D002280 1.6e-63 247.7 333 48.0
Eucgr.I02167 Eucalyptus grandis HOM05D002316 ORTHO05D002280 2.1e-63 247.3 429 40.3
Medtr7g117530 Medicago truncatula HOM05D002316 ORTHO05D002280 2.7e-63 246.9 426 43.7
AT1G53800 Arabidopsis thaliana HOM05D002316 ORTHO05D002280 4.7e-63 246.1 423 42.8
Ca_09566_v3 Cicer arietinum L. HOM05D002316 ORTHO05D002280 4.7e-63 246.1 424 43.4
CDE10G0003 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 6.1e-63 245.7 242 60.3
TPR.G28875 Trifolium pratense HOM05D002316 ORTHO05D002280 2.3e-62 243.8 429 42.2
BraA05t20684Z Brassica rapa HOM05D002316 ORTHO05D002280 5.2e-62 242.7 428 41.4
PGR119G0057 Punica granatum HOM05D002316 ORTHO05D002280 5.2e-62 242.7 253 55.7
A05p17910 Brassica napus HOM05D002316 ORTHO05D002280 6.8e-62 242.3 428 41.4
Lalb_Chr15g0076661 Lupinus albus HOM05D002316 ORTHO05D002280 6.8e-62 242.3 422 41.5
SalBow6G6393 Salvia bowleyana HOM05D002316 ORTHO05D002280 1.5e-61 241.1 441 41.0
TAR624G0517 Trochodendron aralioides HOM05D002316 ORTHO05D002280 3.4e-61 240.0 482 37.6
BolC6t36705H Brassica oleracea HOM05D002316 ORTHO05D002280 7.5e-61 238.8 425 40.5
arahy.Tifrunner.gnm1.ann1.GJ1EJQ Arachis hypogaea HOM05D002316 ORTHO05D002280 9.8e-61 238.4 318 48.1
BcaC08g44130 Brassica carinata HOM05D002316 ORTHO05D002280 9.8e-61 238.4 425 40.5
C06p15300 Brassica napus HOM05D002316 ORTHO05D002280 9.8e-61 238.4 425 40.5
RcHm_v2.0_Chr2g0148111 Rosa chinensis HOM05D002316 ORTHO05D002280 9.8e-61 238.4 289 52.2
Lalb_Chr04g0261261 Lupinus albus HOM05D002316 ORTHO05D002280 1.7e-60 237.7 270 54.4
arahy.Tifrunner.gnm1.ann1.7Q31U7 Arachis hypogaea HOM05D002316 ORTHO05D002280 8.3e-60 235.3 318 48.1
Lalb_Chr17g0343181 Lupinus albus HOM05D002316 ORTHO05D002280 1.1e-59 235.0 421 40.6
SGA_v2.0_scaffold71G23943 Striga asiatica HOM05D002316 ORTHO05D002280 2.7e-58 230.3 426 40.1
CDE10G1231 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 1.0e-57 228.4 424 41.3
Lalb_Chr04g0253971 Lupinus albus HOM05D002316 ORTHO05D002280 3.8e-57 226.5 419 41.8
Hund18629 Selenicereus undatus HOM05D002316 ORTHO05D002280 3.3e-56 223.4 465 39.1
Psat0s3082g0160 Pisum sativum HOM05D002316 ORTHO05D002280 9.5e-56 221.9 426 39.4
HPP92_027909 Vanilla planifolia HOM05D002316 ORTHO05D002280 4.7e-55 219.5 287 48.8
HPP92_024371 Vanilla planifolia HOM05D002316 ORTHO05D002280 3.0e-54 216.9 287 48.4
Os10g0198600 Oryza sativa ssp. japonica HOM05D002316 ORTHO05D002280 3.4e-53 213.4 431 37.8
HPP92_024475 Vanilla planifolia HOM05D002316 ORTHO05D002280 3.7e-52 209.9 287 47.7
SGA_v2.0_scaffold122G33301 Striga asiatica HOM05D000070 ORTHO05D002280 1.8e-51 207.6 246 53.3
ECA234G4725 Erigeron canadensis HOM05D002316 ORTHO05D002280 3.4e-45 186.8 307 43.6
Zm00001eb066360 Zea mays HOM05D002316 ORTHO05D002280 5.8e-45 186.0 433 34.2
HanXRQChr12g0360051 Helianthus annuus HOM05D002316 ORTHO05D002280 1.7e-44 184.5 246 49.6
Lsat_1_v5_gn_5_137661 Lactuca sativa HOM05D002316 ORTHO05D002280 4.9e-44 183.0 262 46.9
Sed0007223 Sechium edule HOM05D002316 ORTHO05D002280 8.3e-44 182.2 426 38.7
Lj3g0022142 Lotus japonicus HOM05D002316 ORTHO05D002280 7.0e-43 179.1 327 41.3
Hund18630 Selenicereus undatus HOM05D002316 ORTHO05D002280 6.0e-42 176.0 446 35.0
SEGI_28906 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 3.6e-39 166.8 281 42.0
CDE05G3243 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 6.2e-39 166.0 113 69.9
CSS0037592 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 4.1e-35 153.3 105 72.4
CSS0001569 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 9.2e-35 152.1 94 77.7
CSS0010846 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 9.2e-35 152.1 94 77.7
Rhsim08G0245300 Rhododendron simsii HOM05D002316 ORTHO05D002280 3.9e-33 146.7 214 43.9
CSS0007790 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 4.3e-32 143.3 95 72.6
HanXRQChr02g0033821 Helianthus annuus HOM05D002316 ORTHO05D002280 2.6e-29 134.0 203 44.8
arahy.Tifrunner.gnm1.ann1.3AJ3RF Arachis hypogaea HOM05D002316 ORTHO05D002280 3.4e-29 133.7 116 59.5
SEGI_23297 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 1.3e-28 131.7 244 38.9
vmacro18717 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 1.7e-28 131.3 94 70.2
arahy.Tifrunner.gnm1.ann1.RGSX4D Arachis hypogaea HOM05D002316 ORTHO05D002280 2.4e-27 127.5 94 67.0
HanXRQChr10g0311621 Helianthus annuus HOM05D002316 ORTHO05D002280 5.4e-27 126.3 242 39.7
CSS0023276 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 3.9e-25 120.2 75 74.7
Hund05697 Selenicereus undatus HOM05D002316 ORTHO05D002280 5.1e-25 119.8 190 45.8
vmacro18773 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 5.1e-25 119.8 100 61.0
arahy.Tifrunner.gnm1.ann1.L7TQPJ Arachis hypogaea HOM05D002316 ORTHO05D002280 2.5e-24 117.5 94 64.9
SMO347G0244 Selaginella moellendorffii HOM05D002316 ORTHO05D002280 1.3e-20 105.1 287 34.1
Mapoly0056s0004 Marchantia polymorpha HOM05D002316 ORTHO05D002280 1.1e-19 102.1 302 32.5
SEGI_25181 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 1.1e-19 102.1 454 27.8
Lj9A539T86 Lonicera japonica HOM05D002316 ORTHO05D002280 1.4e-19 101.7 236 37.7
Duzib160G0897 Durio zibethinus HOM05D002316 ORTHO05D002280 6.6e-17 92.8 219 39.3
arahy.Tifrunner.gnm1.ann1.VE80E0 Arachis hypogaea HOM05D002316 ORTHO05D002280 6.2e-15 86.3 62 71.0
Pp3c20_11380 Physcomitrium patens HOM05D002316 ORTHO05D002280 6.2e-15 86.3 335 28.7
AagrBONN_evm.TU.Sc2ySwM_362.2355 Anthoceros agrestis HOM05D002316 ORTHO05D002280 8.1e-15 85.9 206 34.0
Lj9C539G6 Lonicera japonica HOM05D002316 ORTHO05D002280 1.4e-14 85.1 57 68.4
Pp3c23_5090 Physcomitrium patens HOM05D002316 ORTHO05D002280 1.8e-14 84.7 336 27.7
Psat1g193320 Pisum sativum HOM05D002316 ORTHO05D019804 1.7e-12 78.2 82 52.4
Lj9A539G83 Lonicera japonica HOM05D002316 ORTHO05D002280 8.4e-12 75.9 96 53.1
CSS0028776 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 9.6e-08 62.4 70 61.4
CSS0036220 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 9.6e-08 62.4 43 88.4
CSS0004383 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 2.1e-07 61.2 70 60.0


User provided reference genes

Program Settings