Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016082 Daucus carota HOM05D005388 ORTHO05D006281 1.6e-25 118.6 60 100.0
DCAR_027849 Daucus carota HOM05D005388 ORTHO05D006281 4.7e-17 90.5 54 83.3
RcHm_v2.0_Chr7g0213451 Rosa chinensis HOM05D005388 ORTHO05D006281 2.3e-11 71.6 48 70.8
Nn1g07342 Nelumbo nucifera HOM05D005388 ORTHO05D006281 6.6e-11 70.1 45 73.3
MD10G1330400 Malus domestica HOM05D005388 ORTHO05D006281 8.6e-11 69.7 47 74.5
QL03p029835 Quercus lobata HOM05D005388 ORTHO05D006281 8.6e-11 69.7 53 66.0
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.5e-10 68.9 53 66.0
FAN18G3073 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.5e-10 68.9 53 66.0
FAN04G2929 Fragaria x ananassa HOM05D001252 ORTHO05D006281 1.9e-10 68.6 53 64.2
FAN11G1084 Fragaria x ananassa HOM05D001252 ORTHO05D006281 1.9e-10 68.6 53 64.2
FAN11G2435 Fragaria x ananassa HOM05D000566 ORTHO05D000686 1.9e-10 68.6 53 64.2
FAN13G0148 Fragaria x ananassa HOM05D001252 ORTHO05D001263 1.9e-10 68.6 53 64.2
FAN24G1366 Fragaria x ananassa HOM05D001252 ORTHO05D006281 1.9e-10 68.6 53 64.2
MD03G1153200 Malus domestica HOM05D005388 ORTHO05D006281 1.9e-10 68.6 48 72.9
TAR629G3434 Trochodendron aralioides HOM05D005388 ORTHO05D006281 2.5e-10 68.2 49 67.3
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.3e-10 67.8 53 64.2
Actinidia26868 Actinidia chinensis HOM05D005388 ORTHO05D006281 4.3e-10 67.4 43 74.4
Aqoxy7G03349 Aquilegia oxysepala HOM05D005388 ORTHO05D006281 4.3e-10 67.4 50 66.0
FAN04G2939 Fragaria x ananassa HOM05D005388 ORTHO05D006281 7.3e-10 66.6 51 64.7
vmacro03839 Vaccinium macrocarpon HOM05D005388 ORTHO05D006281 7.3e-10 66.6 49 67.3
CiPaw.09G101500 Carya illinoinensis HOM05D005388 ORTHO05D006281 9.5e-10 66.2 49 69.4
Eucgr.A00642 Eucalyptus grandis HOM05D005388 ORTHO05D006281 9.5e-10 66.2 49 61.2
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 9.5e-10 66.2 48 66.7
QL10p003604 Quercus lobata HOM05D005388 ORTHO05D006281 9.5e-10 66.2 53 64.2
CSS0028564 Camellia sinensis var. sinensis HOM05D005388 ORTHO05D006281 1.6e-09 65.5 48 64.6
CANSAT56G1966 Cannabis sativa HOM05D005388 ORTHO05D006281 1.6e-09 65.5 53 64.2
vmacro03650 Vaccinium macrocarpon HOM05D005388 ORTHO05D006281 1.6e-09 65.5 49 65.3
GSVIVG01004448001 Vitis vinifera HOM05D005388 ORTHO05D006281 1.6e-09 65.5 54 63.0
Haze_06907 Corylus avellana HOM05D005388 ORTHO05D006281 2.1e-09 65.1 57 61.4
Dinv13961 Davidia involucrata HOM05D005388 ORTHO05D006281 2.8e-09 64.7 48 64.6
Lj2A262G50 Lonicera japonica HOM05D005388 ORTHO05D006281 2.8e-09 64.7 49 69.4
TAR624G0708 Trochodendron aralioides HOM05D005388 ORTHO05D006281 2.8e-09 64.7 49 65.3
Hma1.2p1_0660F.1_g197565 Hydrangea macrophylla HOM05D005388 ORTHO05D006281 3.6e-09 64.3 51 66.7
Prupe.4G012000 Prunus persica HOM05D005388 ORTHO05D006281 3.6e-09 64.3 46 69.6
THA.LOC104812711 Tarenaya hassleriana HOM05D005388 ORTHO05D006281 3.6e-09 64.3 49 63.3
Os08g0500900 Oryza sativa ssp. japonica HOM05D005388 ORTHO05D006281 4.7e-09 63.9 45 64.4
HPP92_008146 Vanilla planifolia HOM05D005388 ORTHO05D006281 6.2e-09 63.5 42 69.0
Zm00001eb082710 Zea mays HOM05D005388 ORTHO05D006281 6.2e-09 63.5 42 69.0
Actinidia02320 Actinidia chinensis HOM05D005388 ORTHO05D006281 8.1e-09 63.2 40 75.0
PGR044G2560 Punica granatum HOM05D005388 ORTHO05D006281 8.1e-09 63.2 45 66.7
Os05g0270800 Oryza sativa ssp. japonica HOM05D005388 ORTHO05D006281 1.1e-08 62.8 53 58.5
Peaxi162Scf00558g00317 Petunia axillaris HOM05D005388 ORTHO05D006281 1.1e-08 62.8 40 75.0
Sc04g0003930 Simmondsia chinensis HOM05D005388 ORTHO05D006281 1.1e-08 62.8 40 70.0
Thecc.06G231900 Theobroma cacao HOM05D005388 ORTHO05D006281 1.1e-08 62.8 40 67.5
ATR0561G011 Amborella trichopoda HOM05D005388 ORTHO05D006281 1.4e-08 62.4 42 66.7
CsaV3_7G034450 Cucumis sativus L. HOM05D005388 ORTHO05D006281 1.4e-08 62.4 42 66.7
Atru.chr1.2476 Acer truncatum HOM05D005388 ORTHO05D006281 1.8e-08 62.0 43 65.1
Manes.03G134302 Manihot esculenta HOM05D005388 ORTHO05D006281 1.8e-08 62.0 51 60.8
MSTRG.16020 Avicennia marina HOM05D005388 ORTHO05D006281 3.1e-08 61.2 40 70.0
Glyma.16G037200 Glycine max HOM05D005388 ORTHO05D006281 3.1e-08 61.2 41 70.7
Lj1g0004963 Lotus japonicus HOM05D005388 ORTHO05D006281 3.1e-08 61.2 42 69.0
Sed0023635 Sechium edule HOM05D005388 ORTHO05D006281 3.1e-08 61.2 42 69.0
arahy.Tifrunner.gnm1.ann1.506A6S Arachis hypogaea HOM05D005388 ORTHO05D006281 4.0e-08 60.8 40 72.5
arahy.Tifrunner.gnm1.ann1.NIL5QZ Arachis hypogaea HOM05D005388 ORTHO05D006281 4.0e-08 60.8 40 72.5
arahy.Tifrunner.gnm1.ann1.UC4N4Q Arachis hypogaea HOM05D005388 ORTHO05D006281 4.0e-08 60.8 40 72.5
Sabra16G0117800 Salix brachista HOM05D005388 ORTHO05D006281 4.0e-08 60.8 40 67.5
AL1G49260 Arabidopsis lyrata HOM05D005388 ORTHO05D006281 5.2e-08 60.5 38 71.1
AL2G29970 Arabidopsis lyrata HOM05D005388 ORTHO05D006281 5.2e-08 60.5 38 71.1
AT1G31220 Arabidopsis thaliana HOM05D005388 ORTHO05D006281 5.2e-08 60.5 38 71.1
AUR62009518 Chenopodium quinoa HOM05D005388 ORTHO05D006281 5.2e-08 60.5 40 67.5
Duzib160G0783 Durio zibethinus HOM05D005388 ORTHO05D006281 5.2e-08 60.5 48 58.3
Gohir.A06G152900 Gossypium hirsutum HOM05D005388 ORTHO05D006281 5.2e-08 60.5 40 67.5
Potri.012G107500 Populus trichocarpa HOM05D005388 ORTHO05D006281 5.2e-08 60.5 40 70.0
Cpa.g.sc89.56 Carica papaya HOM05D005388 ORTHO05D006281 6.8e-08 60.1 37 73.0
AUR62034770 Chenopodium quinoa HOM05D005388 ORTHO05D006281 6.8e-08 60.1 40 67.5
COL.COLO4_31868 Corchorus olitorius HOM05D005388 ORTHO05D006281 6.8e-08 60.1 48 58.3
Duzib235G1331 Durio zibethinus HOM05D005388 ORTHO05D006281 6.8e-08 60.1 40 67.5
Lsat_1_v5_gn_5_121860 Lactuca sativa HOM05D005388 ORTHO05D006281 6.8e-08 60.1 49 59.2
PSO339G1452 Papaver somniferum HOM05D005388 ORTHO05D006281 6.8e-08 60.1 40 72.5
Rhsim04G0088400 Rhododendron simsii HOM05D005388 ORTHO05D006281 6.8e-08 60.1 46 65.2
Rhsim04G0089100 Rhododendron simsii HOM05D005388 ORTHO05D006281 6.8e-08 60.1 43 65.1
Solyc11g012100.2 Solanum lycopersicum HOM05D005388 ORTHO05D006281 6.8e-08 60.1 38 71.1
Sopen11g006890 Solanum pennellii HOM05D005388 ORTHO05D006281 6.8e-08 60.1 38 71.1
PGSC0003DMG400013269 Solanum tuberosum HOM05D005388 ORTHO05D006281 6.8e-08 60.1 38 71.1
arahy.Tifrunner.gnm1.ann1.KLAQ17 Arachis hypogaea HOM05D005388 ORTHO05D006281 8.9e-08 59.7 38 73.7
Cc09_g05060 Coffea canephora HOM05D005388 ORTHO05D006281 8.9e-08 59.7 46 63.0
Cc09_g05080 Coffea canephora HOM05D005388 ORTHO05D006281 8.9e-08 59.7 46 63.0
MELO3C024353.2 Cucumis melo HOM05D005388 ORTHO05D006281 8.9e-08 59.7 41 65.9
Migut.M01387 Erythranthe guttata HOM05D005388 ORTHO05D006281 8.9e-08 59.7 46 60.9
Gohir.D06G159300 Gossypium hirsutum HOM05D005388 ORTHO05D006281 8.9e-08 59.7 40 67.5
Gorai.010G186000 Gossypium raimondii HOM05D005388 ORTHO05D006281 8.9e-08 59.7 40 67.5
Lalb_Chr22g0358501 Lupinus albus HOM05D005388 ORTHO05D006281 8.9e-08 59.7 40 75.0
Phvul.001G115300 Phaseolus vulgaris HOM05D005388 ORTHO05D006281 8.9e-08 59.7 41 70.7
VMungo1383G1280 Vigna mungo HOM05D005388 ORTHO05D006281 8.9e-08 59.7 40 72.5
Migut.H01601 Erythranthe guttata HOM05D005388 ORTHO05D006281 1.2e-07 59.3 46 60.9
Nitab4.5_0000143g0400 Nicotiana tabacum HOM05D005388 ORTHO05D006281 1.2e-07 59.3 46 56.5
Nitab4.5_0001198g0130 Nicotiana tabacum HOM05D005388 ORTHO05D006281 1.2e-07 59.3 38 68.4
PSO384G2339 Papaver somniferum HOM05D005388 ORTHO05D006281 1.2e-07 59.3 40 70.0
A09p35020 Brassica napus HOM05D005388 ORTHO05D006281 1.5e-07 58.9 42 61.9
BraA09t39033Z Brassica rapa HOM05D005388 ORTHO05D006281 1.5e-07 58.9 42 61.9
HanXRQChr12g0373991 Helianthus annuus HOM05D005388 ORTHO05D006281 1.5e-07 58.9 49 55.1
HanXRQChr12g0374001 Helianthus annuus HOM05D005388 ORTHO05D006281 1.5e-07 58.9 49 55.1
SEGI_15072 Sequoiadendron giganteum HOM05D005388 ORTHO05D006281 1.5e-07 58.9 42 66.7
SMO353G0366 Selaginella moellendorffii HOM05D005388 ORTHO05D006281 2.0e-07 58.5 38 65.8
BcaB07g32784 Brassica carinata HOM05D005388 ORTHO05D006281 2.6e-07 58.2 38 65.8
BcaC05g27152 Brassica carinata HOM05D005388 ORTHO05D006281 2.6e-07 58.2 42 59.5
C05p30410 Brassica napus HOM05D005388 ORTHO05D006281 2.6e-07 58.2 42 59.5
ClCG09G000980 Citrullus lanatus HOM05D005388 ORTHO05D006281 2.6e-07 58.2 42 64.3
Ciclev10016118m.g Citrus clementina HOM05D005388 ORTHO05D006281 2.6e-07 58.2 45 60.0
Glyma.19G115900 Glycine max HOM05D005388 ORTHO05D006281 2.6e-07 58.2 41 68.3
TPR.G17170 Trifolium pratense HOM05D005388 ORTHO05D006281 2.6e-07 58.2 39 69.2
BolC5t31778H Brassica oleracea HOM05D005388 ORTHO05D006281 3.4e-07 57.8 42 59.5
Medtr1g007170 Medicago truncatula HOM05D005388 ORTHO05D006281 3.4e-07 57.8 39 69.2
Psat6g035160 Pisum sativum HOM05D005388 ORTHO05D006281 3.4e-07 57.8 39 69.2
CARHR030700 Cardamine hirsuta HOM05D005388 ORTHO05D006281 4.4e-07 57.4 46 58.7
unitig_37.g12191 Utricularia gibba HOM05D005388 ORTHO05D006281 4.4e-07 57.4 40 65.0
Carub.0001s2962 Capsella rubella HOM05D005388 ORTHO05D006281 5.8e-07 57.0 42 61.9
EL10Ac5g11305 Beta vulgaris HOM05D005388 ORTHO05D006281 7.6e-07 56.6 40 62.5
ECA234G3218 Erigeron canadensis HOM05D005388 ORTHO05D006281 7.6e-07 56.6 41 61.0
MSTRG.14615 Avicennia marina HOM05D005388 ORTHO05D006281 9.9e-07 56.2 38 73.7
Cre12.g550700 Chlamydomonas reinhardtii HOM05D005388 ORTHO05D006281 9.9e-07 56.2 38 68.4
Sp1g27030 Schrenkiella parvula HOM05D005388 ORTHO05D006281 1.3e-06 55.8 42 59.5
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 1.7e-06 55.5 46 60.9
CBR_g45412 Chara braunii HOM05D005388 ORTHO05D006281 2.9e-06 54.7 52 50.0
SEGI_22933 Sequoiadendron giganteum HOM05D005388 ORTHO05D006281 2.9e-06 54.7 38 65.8
Aa31LG9G16020 Aethionema arabicum HOM05D005388 ORTHO05D006281 3.7e-06 54.3 46 54.3
CDE04G0494 Ceratophyllum demersum HOM05D005388 ORTHO05D006281 3.7e-06 54.3 37 70.3
Thhalv10008369m.g Eutrema salsugineum HOM05D005388 ORTHO05D006281 3.7e-06 54.3 38 63.2
Pp3c13_14970 Physcomitrium patens HOM05D005388 ORTHO05D006281 4.9e-06 53.9 44 56.8
Rhsim04G0092900 Rhododendron simsii HOM05D005388 ORTHO05D006281 4.9e-06 53.9 43 60.5
Ah.00g000100 Amaranthus hybridus HOM05D005388 ORTHO05D006281 6.4e-06 53.5 42 59.5
AagrBONN_evm.TU.Sc2ySwM_369.551 Anthoceros agrestis HOM05D005388 ORTHO05D006281 6.4e-06 53.5 49 57.1


User provided reference genes

Program Settings