Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 2.0e-172 609.0 298 100.0
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 1.2e-60 237.7 292 44.2
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 4.2e-58 229.2 261 47.9
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 7.2e-58 228.4 210 56.7
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 9.4e-58 228.0 201 55.7
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.2e-57 227.6 159 67.3
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 1.6e-57 227.3 202 59.4
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 2.1e-57 226.9 169 62.7
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 2.7e-57 226.5 259 49.4
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 3.6e-57 226.1 159 67.3
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 4.7e-57 225.7 277 46.2
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 8.0e-57 224.9 159 66.7
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 8.0e-57 224.9 172 61.0
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 1.0e-56 224.6 157 66.2
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 1.0e-56 224.6 170 62.9
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 1.4e-56 224.2 169 62.7
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 1.4e-56 224.2 161 64.6
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 1.4e-56 224.2 161 64.6
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.4e-56 224.2 261 46.4
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 2.3e-56 223.4 175 60.6
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 2.3e-56 223.4 188 59.0
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 3.0e-56 223.0 173 60.7
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 3.0e-56 223.0 173 60.7
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 4.0e-56 222.6 156 63.5
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 4.0e-56 222.6 173 61.8
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 4.0e-56 222.6 250 47.2
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 5.2e-56 222.2 154 66.9
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 5.2e-56 222.2 175 59.4
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 6.7e-56 221.9 172 61.0
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 6.7e-56 221.9 172 61.0
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 6.7e-56 221.9 156 64.1
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 8.8e-56 221.5 170 62.9
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 8.8e-56 221.5 172 59.9
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 1.1e-55 221.1 229 52.4
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 1.1e-55 221.1 230 50.9
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 1.5e-55 220.7 163 63.2
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 2.0e-55 220.3 173 60.1
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 2.0e-55 220.3 186 57.5
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 2.0e-55 220.3 167 64.1
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 2.0e-55 220.3 172 60.5
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 2.0e-55 220.3 172 60.5
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 2.0e-55 220.3 172 60.5
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 2.0e-55 220.3 172 60.5
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 2.6e-55 219.9 206 54.9
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.6e-55 219.9 172 59.9
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 5.7e-55 218.8 291 42.6
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 5.7e-55 218.8 168 63.1
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 5.7e-55 218.8 172 59.9
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 7.5e-55 218.4 233 52.4
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 9.7e-55 218.0 193 57.5
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 9.7e-55 218.0 193 57.5
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 9.7e-55 218.0 193 57.5
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 9.7e-55 218.0 271 47.2
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 9.7e-55 218.0 271 47.2
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 1.3e-54 217.6 172 59.3
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.3e-54 217.6 161 60.9
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.3e-54 217.6 175 59.4
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 1.7e-54 217.2 173 59.5
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 3.7e-54 216.1 240 50.0
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 3.7e-54 216.1 240 50.0
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 4.8e-54 215.7 176 60.8
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 4.8e-54 215.7 154 63.0
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.8e-53 213.8 170 60.6
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 3.1e-53 213.0 219 50.2
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 5.3e-53 212.2 233 51.5
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 5.3e-53 212.2 170 60.6
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 1.2e-52 211.1 219 49.8
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 1.6e-52 210.7 140 67.1
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 3.5e-52 209.5 145 65.5
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 4.5e-52 209.1 239 46.9
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 5.9e-52 208.8 157 60.5
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 3.8e-51 206.1 140 65.7
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 8.5e-51 204.9 180 55.0
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 8.5e-51 204.9 162 61.7
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 2.5e-50 203.4 160 59.4
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 2.5e-50 203.4 171 53.2
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 4.2e-50 202.6 177 54.8
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.2e-50 202.6 151 60.9
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 5.5e-50 202.2 245 44.1
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 9.4e-50 201.4 151 60.9
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.6e-49 200.7 151 62.3
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.6e-49 200.7 151 62.3
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 4.7e-49 199.1 152 61.8
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 4.7e-49 199.1 247 42.9
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 8.0e-49 198.4 271 43.5
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 8.0e-49 198.4 152 57.9
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.8e-48 197.2 161 53.4
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 3.0e-48 196.4 294 40.5
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 3.0e-48 196.4 255 42.7
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 5.2e-48 195.7 182 52.7
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 5.7e-47 192.2 173 54.3
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 1.3e-46 191.0 174 53.4
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 6.3e-46 188.7 211 48.3
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 6.3e-46 188.7 136 63.2
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 8.3e-46 188.3 170 51.8
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.8e-45 187.2 172 53.5
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 5.4e-45 185.7 144 59.0
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 7.0e-45 185.3 150 57.3
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 9.1e-45 184.9 147 55.8
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 9.1e-45 184.9 154 53.2
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 4.5e-44 182.6 177 53.7
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 6.5e-43 178.7 194 50.0
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 1.2e-41 174.5 216 44.4
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.8e-40 170.6 155 53.5
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 2.3e-40 170.2 223 44.8
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 2.0e-39 167.2 141 57.4
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 5.7e-39 165.6 163 48.5
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 2.2e-38 163.7 133 55.6
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 4.9e-38 162.5 139 57.6
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 6.3e-38 162.2 172 45.3
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 6.3e-38 162.2 133 58.6
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 1.4e-37 161.0 141 51.8
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 1.8e-37 160.6 264 35.6
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 1.2e-36 157.9 134 54.5
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.5e-34 151.0 198 46.5
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 1.9e-34 150.6 136 49.3
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 2.1e-33 147.1 170 47.1
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 2.1e-33 147.1 170 47.1
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 3.4e-31 139.8 101 62.4
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 5.7e-31 139.0 98 65.3
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 2.2e-30 137.1 104 58.7
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 2.9e-30 136.7 98 64.3
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 9.2e-29 131.7 181 43.1
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 1.6e-28 131.0 98 63.3
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 5.9e-28 129.0 97 62.9
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 7.8e-28 128.6 98 58.2
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 2.1e-25 120.6 134 42.5
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 4.7e-25 119.4 79 69.6
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 8.9e-24 115.2 122 51.6
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 3.4e-23 113.2 133 39.8
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.7e-22 110.9 108 51.9
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 4.9e-22 109.4 96 53.1
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 1.1e-21 108.2 201 32.8
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 7.0e-21 105.5 108 50.0
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 8.1e-17 92.0 73 61.6
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 8.1e-17 92.0 55 69.1
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 2.0e-15 87.4 61 62.3
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 5.8e-15 85.9 54 68.5
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 1.7e-14 84.3 82 48.8
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 3.7e-14 83.2 76 52.6
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 4.9e-14 82.8 104 42.3
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 6.4e-14 82.4 67 55.2
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 7.1e-13 79.0 122 37.7
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.2e-12 78.2 65 61.5
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 1.6e-12 77.8 179 33.0
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 2.5e-10 70.5 65 50.8
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 5.6e-10 69.3 77 49.4
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 4.0e-08 63.2 60 51.7
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 1.7e-06 57.8 126 34.1
HPP92_015994 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.9e-06 57.0 32 71.9
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 4.9e-06 56.2 107 34.6


User provided reference genes

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