Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 3.5e-123 444.9 213 100.0
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 2.9e-93 345.5 212 77.4
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.1e-83 312.8 210 70.5
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.1e-82 308.1 210 69.5
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 3.1e-79 298.9 210 67.6
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 9.0e-79 297.4 210 68.6
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 3.1e-71 272.3 209 62.7
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 3.1e-71 272.3 209 62.7
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 3.4e-70 268.9 210 64.8
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 6.9e-63 244.6 209 58.4
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 1.7e-61 240.0 209 57.4
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.0e-54 216.5 177 55.4
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.1e-52 210.7 211 55.0
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 8.8e-42 174.5 215 44.7
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.2e-41 174.1 214 45.3
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 4.4e-41 172.2 203 42.9
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.7e-41 171.8 218 45.0
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.3e-40 170.6 201 42.3
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 1.7e-40 170.2 203 41.9
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 2.2e-40 169.9 214 43.5
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 4.1e-39 165.6 201 41.3
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 9.1e-39 164.5 203 44.3
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 7.7e-38 161.4 201 42.8
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 1.0e-37 161.0 207 40.1
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.2e-37 159.8 201 40.8
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 2.2e-37 159.8 173 45.1
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 8.5e-37 157.9 201 42.3
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.5e-36 157.1 213 41.3
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 7.2e-36 154.8 203 41.9
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 7.2e-36 154.8 210 40.0
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 8.0e-35 151.4 201 39.8
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 6.8e-34 148.3 182 42.3
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 6.8e-34 148.3 203 42.4
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 2.6e-33 146.4 202 39.1
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 2.6e-33 146.4 204 39.7
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 5.7e-33 145.2 207 41.1
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 9.8e-33 144.4 211 39.8
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 2.2e-32 143.3 179 41.3
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.4e-31 139.8 214 38.3
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.4e-31 139.8 214 38.3
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 4.1e-31 139.0 211 39.3
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 3.5e-30 136.0 201 37.3
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 3.5e-30 136.0 201 37.3
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 7.7e-30 134.8 235 34.5
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 7.7e-30 134.8 211 38.4
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.0e-29 134.4 198 39.4
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 1.3e-29 134.0 215 39.5
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 1.3e-29 134.0 205 37.6
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.7e-29 133.7 204 34.8
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.7e-29 133.7 204 34.8
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 3.8e-29 132.5 201 36.3
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 1.1e-28 131.0 171 40.9
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 3.3e-28 129.4 213 36.2
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 1.2e-27 127.5 214 37.4
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 6.1e-27 125.2 206 35.9
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 8.0e-27 124.8 198 36.4
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 8.0e-27 124.8 143 45.5
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 8.0e-27 124.8 143 45.5
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 5.2e-26 122.1 145 44.8
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.2e-25 120.9 144 40.3
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 2.0e-25 120.2 128 45.3
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 2.6e-25 119.8 128 43.8
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.4e-25 119.0 111 49.5
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.8e-25 117.9 186 37.6
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.2e-24 116.7 198 33.3
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 2.2e-24 116.7 128 43.8
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.9e-24 116.3 182 39.0
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 2.9e-24 116.3 128 43.8
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.9e-24 115.5 196 36.2
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 8.3e-24 114.8 164 36.6
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.4e-23 114.0 180 35.0
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-23 114.0 128 42.2
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.4e-23 114.0 194 36.1
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 2.4e-23 113.2 130 42.3
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 4.1e-23 112.5 213 34.3
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 5.4e-23 112.1 111 46.8
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 1.2e-22 110.9 200 32.5
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 2.0e-22 110.2 128 40.6
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 2.0e-22 110.2 128 40.6
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.0e-21 107.8 183 38.8
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.0e-21 107.8 181 36.5
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 1.3e-21 107.5 131 38.9
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 1.3e-21 107.5 131 38.9
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 1.7e-21 107.1 180 37.2
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.3e-21 106.7 216 30.1
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 2.3e-21 106.7 180 37.2
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 6.6e-21 105.1 170 35.3
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.3e-20 101.7 205 32.7
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.8e-19 99.8 185 35.1
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 2.8e-19 99.8 139 42.4
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 4.7e-19 99.0 150 41.3
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.7e-19 99.0 195 33.3
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.0e-18 97.8 209 32.5
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.4e-18 97.4 181 33.7
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 1.8e-18 97.1 211 29.9
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 4.0e-18 95.9 211 29.4
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.0e-18 95.9 201 32.8
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.0e-18 95.9 144 36.8
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.2e-18 95.5 192 35.4
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.2e-17 94.4 131 42.7
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 1.5e-17 94.0 206 31.1
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.0e-17 93.6 201 28.9
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.6e-17 93.2 202 33.7
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.6e-17 93.2 143 37.1
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.4e-17 92.4 205 30.7
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.8e-17 92.0 191 29.8
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.5e-17 91.7 186 32.8
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.7e-16 90.5 167 28.7
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 2.2e-16 90.1 170 35.3
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 2.2e-16 90.1 187 36.4
ECA233G5781 Erigeron canadensis HOM05D004865 ORTHO05D005949 8.3e-16 88.2 138 39.9
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 5.4e-15 85.5 92 45.7
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.0e-14 83.6 160 31.2
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 6.0e-14 82.0 203 33.0
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 1.0e-13 81.3 203 33.0
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 1.0e-13 81.3 202 33.2
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.7e-13 80.5 147 33.3
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 1.7e-13 80.5 183 32.8
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.7e-13 80.5 208 29.8
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.3e-13 80.1 143 32.2
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 3.0e-13 79.7 193 30.1
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 1.9e-12 77.0 67 47.8
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.5e-12 76.6 188 34.0
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 3.3e-12 76.3 196 31.6
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 4.3e-12 75.9 201 33.3
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 4.3e-12 75.9 183 32.2
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.3e-12 75.1 155 30.3
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.2e-11 74.3 208 26.4
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.1e-11 73.6 176 33.0
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 2.1e-11 73.6 82 41.5
Duzib128G0362 Durio zibethinus HOM05D014226 ORTHO05D016989 4.7e-11 72.4 151 34.4
Duzib128G0451 Durio zibethinus HOM05D014226 ORTHO05D016989 4.7e-11 72.4 151 34.4
Duzib128G1533 Durio zibethinus HOM05D014226 ORTHO05D016989 4.7e-11 72.4 151 34.4
Duzib151G0560 Durio zibethinus HOM05D014226 ORTHO05D016989 4.7e-11 72.4 151 34.4
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 6.2e-11 72.0 167 28.7
Duzib128G0597 Durio zibethinus HOM05D014226 ORTHO05D016989 8.1e-11 71.6 151 34.4
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.1e-11 71.6 133 33.1
Duzib128G0495 Durio zibethinus HOM05D014226 ORTHO05D016989 5.2e-10 68.9 151 33.8
Duzib128G0388 Durio zibethinus HOM05D014226 ORTHO05D016989 1.5e-09 67.4 152 32.2
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.6e-09 66.6 94 39.4
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.4e-09 66.2 109 35.8
Sc24g0002640 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.3e-08 64.3 143 30.1
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.9e-08 63.2 138 31.9
HanXRQChr03g0085641 Helianthus annuus HOM05D004865 ORTHO05D005949 1.4e-07 60.8 142 31.0
AUR62016191 Chenopodium quinoa HOM05D009434 ORTHO05D011504 6.0e-06 55.5 108 32.4


User provided reference genes

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