Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 5.5e-86 321.2 199 100.0
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 7.9e-53 211.1 175 76.6
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 1.0e-52 210.7 192 75.0
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 3.0e-52 209.1 174 75.9
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 5.2e-52 208.4 175 77.7
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 6.7e-52 208.0 192 74.5
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 1.3e-50 203.8 200 70.5
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 2.2e-50 203.0 202 70.3
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 2.8e-50 202.6 193 74.1
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 1.1e-49 200.7 175 76.6
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 1.1e-49 200.7 175 76.6
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 3.1e-49 199.1 200 71.0
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 4.1e-49 198.7 197 69.0
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 5.3e-49 198.4 198 68.2
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 7.0e-49 198.0 194 70.6
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 9.1e-49 197.6 199 68.8
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 2.0e-48 196.4 190 70.0
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 2.6e-48 196.1 203 66.5
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 3.5e-48 195.7 174 74.7
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 5.9e-48 194.9 194 69.1
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 5.9e-48 194.9 194 69.1
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 5.9e-48 194.9 203 67.5
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 7.7e-48 194.5 199 71.4
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 1.0e-47 194.1 198 69.7
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 1.3e-47 193.7 189 70.4
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 1.3e-47 193.7 189 70.4
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 1.7e-47 193.4 195 68.2
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 1.7e-47 193.4 205 67.3
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 2.2e-47 193.0 160 76.9
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 2.2e-47 193.0 194 68.0
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 2.2e-47 193.0 173 74.0
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 2.9e-47 192.6 199 66.8
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 2.9e-47 192.6 199 66.8
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 2.9e-47 192.6 156 78.2
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 5.0e-47 191.8 174 73.6
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 6.5e-47 191.4 174 73.6
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 6.5e-47 191.4 173 73.4
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 6.5e-47 191.4 194 66.0
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 8.5e-47 191.0 195 68.7
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 8.5e-47 191.0 195 67.7
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 8.5e-47 191.0 186 68.3
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 8.5e-47 191.0 155 78.7
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 1.1e-46 190.7 181 71.3
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 1.5e-46 190.3 190 67.9
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 1.5e-46 190.3 195 68.2
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.9e-46 189.9 198 66.7
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 2.5e-46 189.5 199 66.8
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 3.2e-46 189.1 199 65.8
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 5.5e-46 188.3 197 67.0
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 7.2e-46 188.0 199 66.3
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 9.4e-46 187.6 173 71.1
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 9.4e-46 187.6 196 65.8
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 9.4e-46 187.6 158 75.9
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 1.2e-45 187.2 197 65.0
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 1.2e-45 187.2 194 66.0
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 1.6e-45 186.8 199 65.3
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 2.1e-45 186.4 173 69.9
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 2.1e-45 186.4 199 65.8
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 2.1e-45 186.4 196 66.8
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.1e-45 186.4 199 65.3
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 2.1e-45 186.4 173 71.7
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 6.1e-45 184.9 156 76.3
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 8.0e-45 184.5 191 67.5
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 1.0e-44 184.1 201 65.7
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 1.4e-44 183.7 192 66.1
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 2.3e-44 183.0 202 64.4
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 2.3e-44 183.0 154 77.3
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 2.3e-44 183.0 193 66.3
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 3.0e-44 182.6 194 65.5
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 3.0e-44 182.6 197 66.0
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 6.7e-44 181.4 194 65.5
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 6.7e-44 181.4 189 68.3
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 8.8e-44 181.0 158 72.2
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 8.8e-44 181.0 149 79.2
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 1.5e-43 180.3 197 65.5
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 1.5e-43 180.3 204 64.2
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 1.5e-43 180.3 147 79.6
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 2.0e-43 179.9 201 65.2
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 2.6e-43 179.5 158 74.1
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 3.3e-43 179.1 194 64.9
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 4.4e-43 178.7 199 62.3
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 5.7e-43 178.3 211 62.6
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 9.7e-43 177.6 154 74.7
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 1.3e-42 177.2 195 63.1
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 2.2e-42 176.4 151 76.8
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 2.2e-42 176.4 150 76.0
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 3.7e-42 175.6 196 62.2
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 1.8e-41 173.3 148 77.0
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 3.1e-41 172.6 156 71.8
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 3.1e-41 172.6 156 71.8
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 4.1e-41 172.2 155 75.5
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 1.2e-40 170.6 149 75.8
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 1.6e-40 170.2 198 62.6
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 2.0e-40 169.9 195 61.0
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 2.7e-40 169.5 201 61.7
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 2.7e-40 169.5 155 72.3
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 5.9e-40 168.3 199 61.3
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 1.0e-39 167.5 199 61.3
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 5.0e-39 165.2 195 59.5
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 6.5e-39 164.9 194 61.3
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 4.2e-38 162.2 134 79.1
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 5.2e-36 155.2 199 59.8
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 5.7e-35 151.8 205 56.1
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 2.8e-34 149.4 199 53.8
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 3.1e-33 146.0 193 58.5
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 4.1e-33 145.6 201 55.7
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 7.7e-32 141.4 198 56.1
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 2.5e-30 136.3 169 58.0
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 4.9e-26 122.1 156 58.3
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 9.2e-25 117.9 206 52.4
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 2.0e-24 116.7 109 61.5
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 2.0e-24 116.7 150 57.3
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 7.5e-19 98.2 197 48.2
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 7.5e-19 98.2 146 54.1
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 2.2e-18 96.7 91 59.3
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 2.9e-18 96.3 110 57.3
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 4.9e-18 95.5 139 54.7
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 1.6e-16 90.5 127 48.0
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 2.0e-16 90.1 202 43.6
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 3.7e-10 69.3 126 48.4
Pp3c24_420 Physcomitrium patens HOM05D006349 ORTHO05D008205 6.0e-08 62.0 199 38.7


User provided reference genes

Program Settings