Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 2.9e-125 451.8 215 100.0
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 2.0e-102 375.9 212 81.1
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.6e-91 339.7 214 76.6
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.7e-91 338.2 214 75.2
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.7e-91 338.2 214 74.8
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.8e-80 302.4 218 67.0
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.8e-80 302.4 218 67.0
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 3.2e-76 288.9 213 66.2
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.8e-66 254.6 198 62.1
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 5.0e-53 211.8 214 49.1
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 1.1e-52 210.7 214 49.5
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 1.6e-43 180.3 204 46.1
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 4.7e-43 178.7 210 42.9
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.1e-42 177.6 206 46.6
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-42 177.2 205 46.3
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.8e-42 176.8 205 46.8
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.3e-42 176.4 212 43.9
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 4.0e-42 175.6 214 43.5
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 8.9e-42 174.5 205 47.3
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 1.2e-41 174.1 209 44.0
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.0e-41 173.3 212 43.4
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 4.4e-41 172.2 205 45.4
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.2e-40 169.9 205 45.9
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.9e-39 166.8 209 42.1
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 5.4e-39 165.2 206 44.7
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 7.1e-39 164.9 204 44.1
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 1.6e-38 163.7 204 44.1
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.7e-38 162.9 208 43.3
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.7e-38 162.9 208 43.3
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 1.2e-35 154.1 206 39.8
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 1.6e-35 153.7 205 42.9
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 2.3e-34 149.8 182 44.0
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 4.0e-34 149.1 202 42.6
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 4.0e-34 149.1 202 42.6
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 9.9e-33 144.4 208 40.4
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 1.3e-32 144.1 151 47.7
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.3e-32 144.1 205 40.5
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.7e-32 143.7 159 46.5
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.7e-32 143.7 179 44.7
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 1.7e-32 143.7 208 40.9
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 4.1e-31 139.0 204 40.2
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 6.0e-30 135.2 216 39.4
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 2.5e-28 129.8 205 39.0
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 4.3e-28 129.0 204 38.2
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.8e-27 126.3 141 44.7
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 3.6e-27 125.9 150 42.0
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 6.2e-27 125.2 127 45.7
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 6.2e-27 125.2 127 45.7
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 1.8e-26 123.6 134 44.0
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 3.1e-26 122.9 175 38.3
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.1e-26 122.9 196 36.7
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 5.2e-26 122.1 208 37.0
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 5.2e-26 122.1 142 47.2
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 5.2e-26 122.1 142 47.2
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.0e-25 120.2 144 45.8
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 7.6e-25 118.2 203 36.5
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 9.9e-25 117.9 203 36.5
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 9.9e-25 117.9 206 36.9
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.3e-24 117.5 203 35.5
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 1.7e-24 117.1 127 44.1
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.2e-24 116.7 214 34.1
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.2e-24 116.7 199 37.7
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 2.9e-24 116.3 186 40.3
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 2.9e-24 116.3 204 36.8
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 6.4e-24 115.2 206 35.9
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 8.4e-24 114.8 205 33.7
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-23 114.0 127 42.5
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 2.4e-23 113.2 175 36.0
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.4e-23 113.2 203 35.5
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 3.2e-23 112.8 175 36.0
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 3.2e-23 112.8 175 36.0
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 3.2e-23 112.8 163 40.5
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 5.4e-23 112.1 192 39.6
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 9.3e-23 111.3 205 35.6
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.7e-22 109.8 197 34.0
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.0e-22 108.6 184 37.5
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.8e-22 108.2 199 33.7
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.8e-22 108.2 187 35.8
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 5.1e-21 105.5 209 33.0
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.6e-21 105.1 201 32.8
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 6.6e-21 105.1 205 35.1
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.5e-20 103.2 208 33.7
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.3e-20 102.4 189 34.9
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 7.3e-20 101.7 209 31.1
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.6e-20 101.3 197 32.5
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-19 100.1 200 33.5
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.8e-19 99.8 201 31.3
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.6e-19 99.4 198 32.3
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.8e-19 99.0 179 34.1
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.1e-18 96.3 117 43.6
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.0e-18 95.9 168 33.3
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 5.3e-18 95.5 205 32.7
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 4.5e-17 92.4 168 33.9
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.8e-17 92.0 208 33.2
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 7.6e-17 91.7 138 39.1
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.7e-16 90.5 156 33.3
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.9e-16 89.7 158 36.1
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 2.9e-16 89.7 157 38.2
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 2.9e-16 89.7 157 38.2
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.0e-14 82.0 208 28.8
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.0e-14 82.0 169 30.8
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 7.9e-14 81.6 136 36.8
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.3e-13 80.1 132 37.9
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.9e-13 79.3 155 34.8
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.1e-13 79.0 143 35.7
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-12 77.8 136 28.7
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.9e-12 77.0 88 46.6
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 2.5e-12 76.6 213 31.0
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 5.6e-12 75.5 201 29.4
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.6e-11 73.9 170 30.6
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.6e-11 73.9 140 31.4
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 2.1e-11 73.6 134 35.1
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.4e-10 70.1 168 32.7
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.1e-10 69.7 146 30.8
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 3.1e-10 69.7 115 37.4
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.5e-09 65.9 104 35.6
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.7e-08 63.9 142 33.8
AUR62012550 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.7e-08 63.9 207 25.1
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 1.7e-08 63.9 149 34.2
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 1.7e-08 63.9 149 34.2
ECA233G5781 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.2e-08 63.5 132 32.6
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 3.8e-08 62.8 63 46.0
Sc24g0002640 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.4e-08 62.0 161 31.1


User provided reference genes

Program Settings