Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015915 Daucus carota HOM05D002907 ORTHO05D005554 2.9e-238 828.2 417 100.0
DCAR_024022 Daucus carota HOM05D002907 ORTHO05D005554 6.5e-57 225.7 411 33.8
DCAR_010335 Daucus carota HOM05D002907 ORTHO05D005554 1.7e-41 174.5 362 32.3
Peaxi162Scf00005g02517 Petunia axillaris HOM05D002907 ORTHO05D005554 3.8e-41 173.3 430 27.0
Peaxi162Scf00386g00927 Petunia axillaris HOM05D002907 ORTHO05D005554 2.5e-40 170.6 430 26.7
Peaxi162Scf01370g00020 Petunia axillaris HOM05D002907 ORTHO05D005554 3.0e-38 163.7 461 24.9
Peaxi162Scf00661g00421 Petunia axillaris HOM05D002907 ORTHO05D005554 6.0e-34 149.4 431 26.0
Peaxi162Scf00073g02336 Petunia axillaris HOM05D002907 ORTHO05D005554 5.0e-33 146.4 429 25.9
CANSAT35G0321 Cannabis sativa HOM05D002907 ORTHO05D005554 1.6e-31 141.4 336 27.4
Nitab4.5_0000011g0020 Nicotiana tabacum HOM05D002907 ORTHO05D005554 3.1e-30 137.1 327 27.5
Solyc10g074430.2 Solanum lycopersicum HOM05D002907 ORTHO05D005554 3.2e-27 127.1 418 25.4
DCAR_030301 Daucus carota HOM05D002907 ORTHO05D005554 7.0e-27 125.9 201 32.3
Peaxi162Scf00168g01413 Petunia axillaris HOM05D002907 ORTHO05D005554 8.6e-25 119.0 359 24.5
DCAR_027158 Daucus carota HOM05D002907 ORTHO05D005554 1.1e-22 112.1 219 30.1
Sopen09g023780 Solanum pennellii HOM05D002907 ORTHO05D005554 1.4e-22 111.7 423 21.5
Nitab4.5_0002986g0060 Nicotiana tabacum HOM05D002907 ORTHO05D005554 3.1e-22 110.5 430 23.3
Sopen11g022000 Solanum pennellii HOM05D002907 ORTHO05D005554 1.2e-21 108.6 423 21.3
Sopen06g010830 Solanum pennellii HOM05D002907 ORTHO05D005554 2.2e-20 104.4 295 24.1
Nitab4.5_0000162g0050 Nicotiana tabacum HOM05D002907 ORTHO05D005554 3.2e-19 100.5 229 26.6
CANSAT01G2740 Cannabis sativa HOM05D002907 ORTHO05D005554 6.0e-18 96.3 235 25.5
Nitab4.5_0002746g0010 Nicotiana tabacum HOM05D002907 ORTHO05D005554 7.8e-18 95.9 228 26.8
DCAR_015940 Daucus carota HOM05D002907 ORTHO05D005554 6.6e-17 92.8 225 30.2
QL06p039579 Quercus lobata HOM05D002907 ORTHO05D000065 8.6e-17 92.4 425 21.2
Duzib160G0267 Durio zibethinus HOM05D002907 ORTHO05D000065 9.5e-16 89.0 324 25.0
Peaxi162Scf00635g00615 Petunia axillaris HOM05D002907 ORTHO05D005554 1.2e-15 88.6 375 22.1
CANSAT01G3093 Cannabis sativa HOM05D002907 ORTHO05D005554 1.6e-15 88.2 158 29.7
Sopen01g012720 Solanum pennellii HOM05D002907 ORTHO05D005554 1.1e-14 85.5 132 33.3
Peaxi162Scf00816g00411 Petunia axillaris HOM05D002907 ORTHO05D005554 1.4e-14 85.1 408 22.1
Hma1.2p1_0045F.1_g026410 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 2.4e-14 84.3 422 22.5
QL03p025410 Quercus lobata HOM05D000005 ORTHO05D000065 5.2e-14 83.2 410 20.2
Solyc12g038200.3 Solanum lycopersicum HOM05D002700 ORTHO05D003228 5.2e-14 83.2 260 22.3
SGA_v2.0_scaffold106G30698 Striga asiatica HOM05D000353 ORTHO05D000174 5.2e-14 83.2 340 25.6
Solyc02g044000.3 Solanum lycopersicum HOM05D002907 ORTHO05D005554 1.5e-13 81.6 328 23.2
Peaxi162Scf00203g01424 Petunia axillaris HOM05D002907 ORTHO05D005554 4.4e-13 80.1 225 26.2
CANSAT56G3687 Cannabis sativa HOM05D002907 ORTHO05D005554 1.7e-12 78.2 275 23.3
CANSAT64G0304 Cannabis sativa HOM05D002907 ORTHO05D000065 1.7e-12 78.2 206 26.2
Medtr4g032565 Medicago truncatula HOM05D002441 ORTHO05D002376 3.8e-12 77.0 168 28.6
CANSAT78G0666 Cannabis sativa HOM05D002907 ORTHO05D005554 4.9e-12 76.6 289 22.1
Medtr4g032585 Medicago truncatula HOM05D000353 ORTHO05D002376 4.9e-12 76.6 168 28.6
Solyc07g017280.3 Solanum lycopersicum HOM05D002907 ORTHO05D005554 4.1e-11 73.6 178 28.7
Aqoxy3G01099 Aquilegia oxysepala HOM05D002907 ORTHO05D005554 5.4e-11 73.2 403 21.1
Medtr7g051400 Medicago truncatula HOM05D008036 ORTHO05D000174 5.4e-11 73.2 203 26.1
Peaxi162Scf00431g00511 Petunia axillaris HOM05D002907 ORTHO05D005554 1.2e-10 72.0 96 35.4
ECA233G2538 Erigeron canadensis HOM05D009063 ORTHO05D011082 2.7e-10 70.9 130 30.0
Lj7A628T41 Lonicera japonica HOM05D002907 ORTHO05D000065 4.6e-10 70.1 151 25.2
Aqoxy5G02969 Aquilegia oxysepala HOM05D002907 ORTHO05D005554 1.3e-09 68.6 408 21.8
BcaB04g16903 Brassica carinata HOM05D000313 ORTHO05D000065 1.7e-09 68.2 331 23.0
AL7G11640 Arabidopsis lyrata HOM05D000353 ORTHO05D010269 3.0e-09 67.4 180 28.3
arahy.Tifrunner.gnm1.ann1.9DML6S Arachis hypogaea HOM05D002441 ORTHO05D002376 3.0e-09 67.4 344 20.9
Medtr1g105785 Medicago truncatula HOM05D008036 ORTHO05D000174 3.9e-09 67.0 253 22.5
DCAR_031322 Daucus carota HOM05D002907 ORTHO05D000065 8.7e-09 65.9 167 26.3
DCAR_032054 Daucus carota HOM05D002907 ORTHO05D000065 8.7e-09 65.9 359 22.6
Lsat_1_v5_gn_2_46441 Lactuca sativa HOM05D002730 ORTHO05D011082 8.7e-09 65.9 172 28.5
Aqoxy4G01036 Aquilegia oxysepala HOM05D000100 ORTHO05D000052 1.1e-08 65.5 355 22.5
Sopen02g003400 Solanum pennellii HOM05D002907 ORTHO05D005554 1.1e-08 65.5 108 30.6
Aqoxy5G02850 Aquilegia oxysepala HOM05D002907 ORTHO05D005554 1.5e-08 65.1 379 20.1
AL2G22250 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 1.5e-08 65.1 155 28.4
AL5G12710 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 1.5e-08 65.1 155 28.4
arahy.Tifrunner.gnm1.ann1.18WZIV Arachis hypogaea HOM05D002441 ORTHO05D002376 1.5e-08 65.1 430 18.8
AL1G55630 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 2.5e-08 64.3 155 28.4
AL2G19920 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 2.5e-08 64.3 155 28.4
AL4G20710 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 2.5e-08 64.3 155 28.4
AL6G41920 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 2.5e-08 64.3 155 28.4
AL8G21920 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 2.5e-08 64.3 155 28.4
BraA05t19978Z Brassica rapa HOM05D000313 ORTHO05D000065 2.5e-08 64.3 323 25.4
Nitab4.5_0002548g0050 Nicotiana tabacum HOM05D002907 ORTHO05D005554 2.5e-08 64.3 215 22.3
DCAR_020135 Daucus carota HOM05D002907 ORTHO05D005554 4.3e-08 63.5 208 24.5
DCAR_026397 Daucus carota HOM05D002492 ORTHO05D002621 4.3e-08 63.5 320 20.3
ECA232G0261 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.3e-08 63.5 360 25.0
SGA_v2.0_scaffold53G19410 Striga asiatica HOM05D002090 ORTHO05D000174 4.3e-08 63.5 387 21.7
C01p35750 Brassica napus HOM05D000313 ORTHO05D000065 5.6e-08 63.2 333 21.0
C07p15520 Brassica napus HOM05D000313 ORTHO05D000065 5.6e-08 63.2 325 21.8
HanXRQChr15g0464461 Helianthus annuus HOM05D003964 ORTHO05D000174 5.6e-08 63.2 156 28.2
Medtr7g110100 Medicago truncatula HOM05D008036 ORTHO05D000174 5.6e-08 63.2 136 27.2
A02p28640 Brassica napus HOM05D000353 ORTHO05D000174 7.3e-08 62.8 130 27.7
DCAR_017878 Daucus carota HOM05D002492 ORTHO05D002621 7.3e-08 62.8 321 20.6
Nitab4.5_0009770g0030 Nicotiana tabacum HOM05D002907 ORTHO05D005554 7.3e-08 62.8 301 21.6
BcaC01g05296 Brassica carinata HOM05D000353 ORTHO05D000174 9.6e-08 62.4 156 28.2
DCAR_000518 Daucus carota HOM05D002907 ORTHO05D000065 9.6e-08 62.4 141 27.0
DCAR_016052 Daucus carota HOM05D002492 ORTHO05D002621 9.6e-08 62.4 344 20.6
AL9U11500 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 1.2e-07 62.0 145 29.7
arahy.Tifrunner.gnm1.ann1.BDM5B3 Arachis hypogaea HOM05D002441 ORTHO05D002376 1.2e-07 62.0 446 21.5
arahy.Tifrunner.gnm1.ann1.DBF1B4 Arachis hypogaea HOM05D002441 ORTHO05D002376 1.2e-07 62.0 440 18.4
EL10Ac6g13902 Beta vulgaris HOM05D002907 ORTHO05D011950 1.2e-07 62.0 154 24.7
DCAR_025606 Daucus carota HOM05D012849 ORTHO05D000065 1.2e-07 62.0 132 27.3
AL1G50710 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 1.6e-07 61.6 155 27.7
Lj2A19T41 Lonicera japonica HOM05D002907 ORTHO05D000065 2.1e-07 61.2 127 24.4
QL03p038017 Quercus lobata HOM05D000313 ORTHO05D000065 2.1e-07 61.2 123 26.0
RcHm_v2.0_Chr5g0010461 Rosa chinensis HOM05D006849 ORTHO05D003348 2.1e-07 61.2 323 20.7
DCAR_009226 Daucus carota HOM05D000033 ORTHO05D000913 2.8e-07 60.8 153 28.8
DCAR_031560 Daucus carota HOM05D002907 ORTHO05D014614 2.8e-07 60.8 336 21.7
PGSC0003DMG400044579 Solanum tuberosum HOM05D002907 ORTHO05D005554 2.8e-07 60.8 80 36.2
HanXRQChr15g0471541 Helianthus annuus HOM05D003964 ORTHO05D000174 3.6e-07 60.5 202 24.3
Solyc02g055537.1 Solanum lycopersicum HOM05D002907 ORTHO05D005554 3.6e-07 60.5 92 32.6
Solyc06g034070.3 Solanum lycopersicum HOM05D002907 ORTHO05D005554 3.6e-07 60.5 116 28.4
C02p26880 Brassica napus HOM05D000313 ORTHO05D000065 4.7e-07 60.1 336 25.9
C05p57210 Brassica napus HOM05D000353 ORTHO05D000174 4.7e-07 60.1 160 31.2
BolC7t42040H Brassica oleracea HOM05D000313 ORTHO05D000065 4.7e-07 60.1 337 20.5
Nitab4.5_0009770g0040 Nicotiana tabacum HOM05D002907 ORTHO05D005554 4.7e-07 60.1 84 34.5
BcaB08g35018 Brassica carinata HOM05D000305 ORTHO05D000065 6.2e-07 59.7 172 22.1
A06p16970 Brassica napus HOM05D000353 ORTHO05D000174 6.2e-07 59.7 160 31.2
C03p18660 Brassica napus HOM05D000353 ORTHO05D000174 6.2e-07 59.7 155 28.4
C06p01070 Brassica napus HOM05D000353 ORTHO05D000174 6.2e-07 59.7 160 30.0
BraA06t24806Z Brassica rapa HOM05D000353 ORTHO05D000174 6.2e-07 59.7 160 31.2
BraA10t42806Z Brassica rapa HOM05D000353 ORTHO05D000174 6.2e-07 59.7 160 31.2
CAN.G1243.6 Capsicum annuum HOM05D002907 ORTHO05D005554 6.2e-07 59.7 81 37.0
DCAR_016025 Daucus carota HOM05D002907 ORTHO05D005554 6.2e-07 59.7 52 57.7
Nitab4.5_0000037g0130 Nicotiana tabacum HOM05D002907 ORTHO05D005554 6.2e-07 59.7 78 37.2
arahy.Tifrunner.gnm1.ann1.8J8DAZ Arachis hypogaea HOM05D002441 ORTHO05D002376 8.1e-07 59.3 198 23.2
BcaB05g22552 Brassica carinata HOM05D000353 ORTHO05D000174 8.1e-07 59.3 231 26.0
A02p01740 Brassica napus HOM05D000096 ORTHO05D000045 8.1e-07 59.3 160 31.2
C09p27100 Brassica napus HOM05D000353 ORTHO05D000174 8.1e-07 59.3 155 28.4
DCAR_001457 Daucus carota HOM05D002907 ORTHO05D000065 8.1e-07 59.3 130 28.5
C05p17990 Brassica napus HOM05D000313 ORTHO05D000065 1.1e-06 58.9 329 21.6
C06p22090 Brassica napus HOM05D000353 ORTHO05D000174 1.1e-06 58.9 144 27.8
BolC6t37396H Brassica oleracea HOM05D000353 ORTHO05D000174 1.1e-06 58.9 144 27.8
Nitab4.5_0000037g0150 Nicotiana tabacum HOM05D002907 ORTHO05D005554 1.1e-06 58.9 151 27.2
arahy.Tifrunner.gnm1.ann1.U0JAJ0 Arachis hypogaea HOM05D002441 ORTHO05D002376 1.4e-06 58.5 350 19.4
Peaxi162Scf00505g00016 Petunia axillaris HOM05D002907 ORTHO05D005554 1.4e-06 58.5 331 19.9
AL1G48730 Arabidopsis lyrata HOM05D000353 ORTHO05D031316 1.8e-06 58.2 135 26.7
arahy.Tifrunner.gnm1.ann1.Y0MAT2 Arachis hypogaea HOM05D002441 ORTHO05D002376 1.8e-06 58.2 325 22.2
C07p23830 Brassica napus HOM05D000313 ORTHO05D000065 1.8e-06 58.2 336 21.4
CANSAT56G4249 Cannabis sativa HOM05D002907 ORTHO05D005554 1.8e-06 58.2 103 28.2
Thhalv10000133m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 1.8e-06 58.2 432 22.0
HanXRQChr15g0463841 Helianthus annuus HOM05D000353 ORTHO05D000174 1.8e-06 58.2 226 23.9
HanXRQChr15g0490181 Helianthus annuus HOM05D003964 ORTHO05D000174 1.8e-06 58.2 153 26.8
Lj1A275T36 Lonicera japonica HOM05D002907 ORTHO05D000065 1.8e-06 58.2 128 26.6
Nitab4.5_0000248g0100 Nicotiana tabacum HOM05D002907 ORTHO05D005554 2.4e-06 57.8 79 38.0
Solyc10g050400.1 Solanum lycopersicum HOM05D002907 ORTHO05D005554 2.4e-06 57.8 320 20.0
AT1G52950 Arabidopsis thaliana HOM05D000353 ORTHO05D000174 3.1e-06 57.4 148 25.7
BcaB03g16606 Brassica carinata HOM05D000353 ORTHO05D000174 3.1e-06 57.4 219 23.3
ECA247G4094 Erigeron canadensis HOM05D000353 ORTHO05D000174 3.1e-06 57.4 154 24.0
DCAR_031281 Daucus carota HOM05D002492 ORTHO05D002621 4.0e-06 57.0 357 21.8
Nitab4.5_0001245g0050 Nicotiana tabacum HOM05D002907 ORTHO05D000065 4.0e-06 57.0 84 34.5
A03p68320 Brassica napus HOM05D000353 ORTHO05D000174 5.2e-06 56.6 149 27.5
COL.COLO4_21426 Corchorus olitorius HOM05D007876 ORTHO05D007430 5.2e-06 56.6 347 19.6
COL.COLO4_32054 Corchorus olitorius HOM05D007876 ORTHO05D007430 5.2e-06 56.6 350 20.0
ECA238G1832 Erigeron canadensis HOM05D000096 ORTHO05D000045 5.2e-06 56.6 201 25.9
Aqoxy1G03362 Aquilegia oxysepala HOM05D012322 ORTHO05D014819 6.9e-06 56.2 141 25.5
C05p46420 Brassica napus HOM05D000313 ORTHO05D000065 6.9e-06 56.2 331 22.1
HanXRQChr13g0387501 Helianthus annuus HOM05D003964 ORTHO05D000174 6.9e-06 56.2 151 27.8
Peaxi162Scf00010g01319 Petunia axillaris HOM05D002441 ORTHO05D002376 6.9e-06 56.2 142 31.0
Solyc10g050370.2 Solanum lycopersicum HOM05D002907 ORTHO05D005554 6.9e-06 56.2 140 26.4
BcaC09g51435 Brassica carinata HOM05D000353 ORTHO05D000174 9.0e-06 55.8 152 27.6
A04p07180 Brassica napus HOM05D000353 ORTHO05D000174 9.0e-06 55.8 149 27.5
A07p12890 Brassica napus HOM05D000353 ORTHO05D000174 9.0e-06 55.8 149 27.5
BolC1t01288H Brassica oleracea HOM05D000353 ORTHO05D000174 9.0e-06 55.8 152 27.6
BraA09t38076Z Brassica rapa HOM05D000353 ORTHO05D000174 9.0e-06 55.8 149 27.5
CAN.G181.45 Capsicum annuum HOM05D002907 ORTHO05D005554 9.0e-06 55.8 93 32.3
ECA246G4325 Erigeron canadensis HOM05D000353 ORTHO05D000174 9.0e-06 55.8 144 25.0
HanXRQChr05g0155711 Helianthus annuus HOM05D003964 ORTHO05D000174 9.0e-06 55.8 227 21.6
HanXRQChr09g0254941 Helianthus annuus HOM05D003964 ORTHO05D000174 9.0e-06 55.8 165 26.1
QL07p006362 Quercus lobata HOM05D002907 ORTHO05D005554 9.0e-06 55.8 273 22.7


User provided reference genes

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