Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 9.2e-75 283.5 145 100.0
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 2.1e-26 122.9 91 75.8
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 1.1e-19 100.5 105 55.2
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 1.9e-19 99.8 95 58.9
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 4.2e-19 98.6 95 62.1
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 9.3e-19 97.4 115 55.7
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 1.6e-18 96.7 107 57.9
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 2.7e-18 95.9 80 65.0
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 4.6e-18 95.1 98 55.1
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 6.0e-18 94.7 96 58.3
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 1.0e-17 94.0 98 54.1
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 1.0e-17 94.0 98 58.2
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 1.8e-17 93.2 104 55.8
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 1.8e-17 93.2 104 55.8
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 2.3e-17 92.8 97 56.7
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 2.3e-17 92.8 97 56.7
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 2.3e-17 92.8 98 57.1
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 2.3e-17 92.8 75 66.7
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 3.0e-17 92.4 108 56.5
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 3.0e-17 92.4 96 60.4
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 3.0e-17 92.4 98 59.2
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 3.0e-17 92.4 96 59.4
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 3.9e-17 92.0 85 58.8
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 3.9e-17 92.0 97 57.7
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 5.1e-17 91.7 94 60.6
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 5.1e-17 91.7 75 65.3
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 6.7e-17 91.3 108 51.9
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 6.7e-17 91.3 78 69.2
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 6.7e-17 91.3 107 56.1
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 8.7e-17 90.9 104 54.8
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 1.1e-16 90.5 107 54.2
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 1.5e-16 90.1 97 58.8
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.5e-16 90.1 96 57.3
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 1.5e-16 90.1 96 57.3
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 1.5e-16 90.1 98 58.2
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 1.5e-16 90.1 107 53.3
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 2.5e-16 89.4 98 55.1
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 2.5e-16 89.4 95 55.8
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 3.3e-16 89.0 76 67.1
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 3.3e-16 89.0 91 56.0
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 3.3e-16 89.0 95 56.8
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 4.3e-16 88.6 125 45.6
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 5.7e-16 88.2 107 53.3
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 5.7e-16 88.2 93 57.0
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 5.7e-16 88.2 99 54.5
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 7.4e-16 87.8 98 54.1
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 7.4e-16 87.8 92 56.5
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 7.4e-16 87.8 104 51.9
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 9.7e-16 87.4 95 56.8
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 9.7e-16 87.4 78 65.4
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 9.7e-16 87.4 97 57.7
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 9.7e-16 87.4 88 60.2
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 9.7e-16 87.4 94 56.4
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 9.7e-16 87.4 108 52.8
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 1.3e-15 87.0 80 62.5
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.3e-15 87.0 108 51.9
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.6e-15 86.7 95 56.8
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 1.6e-15 86.7 96 55.2
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 1.6e-15 86.7 78 60.3
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 1.6e-15 86.7 95 53.7
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 1.6e-15 86.7 108 52.8
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 2.2e-15 86.3 95 55.8
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 2.2e-15 86.3 108 52.8
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 2.8e-15 85.9 117 52.1
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 2.8e-15 85.9 97 53.6
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 2.8e-15 85.9 108 50.9
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 3.7e-15 85.5 108 52.8
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 4.8e-15 85.1 108 52.8
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 4.8e-15 85.1 108 52.8
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 4.8e-15 85.1 107 53.3
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 6.3e-15 84.7 104 51.0
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 6.3e-15 84.7 98 52.0
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 6.3e-15 84.7 98 54.1
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 6.3e-15 84.7 94 55.3
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 6.3e-15 84.7 94 56.4
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 8.2e-15 84.3 90 53.3
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 8.2e-15 84.3 70 67.1
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.1e-14 84.0 107 51.4
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 1.1e-14 84.0 110 50.0
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 1.4e-14 83.6 90 53.3
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 1.4e-14 83.6 97 54.6
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 1.8e-14 83.2 90 54.4
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 1.8e-14 83.2 97 53.6
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 2.4e-14 82.8 90 53.3
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 2.4e-14 82.8 90 53.3
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 2.4e-14 82.8 90 54.4
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 3.1e-14 82.4 90 53.3
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 3.1e-14 82.4 90 53.3
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 3.1e-14 82.4 90 53.3
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 4.1e-14 82.0 90 53.3
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 4.1e-14 82.0 97 54.6
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 4.1e-14 82.0 98 49.0
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 5.3e-14 81.6 117 50.4
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 5.3e-14 81.6 95 54.7
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 6.9e-14 81.3 117 50.4
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 6.9e-14 81.3 96 53.1
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 9.0e-14 80.9 95 53.7
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 9.0e-14 80.9 117 47.9
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 9.0e-14 80.9 108 47.2
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 1.2e-13 80.5 101 54.5
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 1.2e-13 80.5 98 48.0
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.5e-13 80.1 108 48.1
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 2.0e-13 79.7 75 58.7
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 2.0e-13 79.7 90 53.3
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 2.6e-13 79.3 95 53.7
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 3.4e-13 79.0 76 57.9
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 3.4e-13 79.0 76 57.9
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 3.4e-13 79.0 76 57.9
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 3.4e-13 79.0 76 57.9
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 3.4e-13 79.0 76 57.9
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 3.4e-13 79.0 108 49.1
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 4.5e-13 78.6 90 52.2
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 4.5e-13 78.6 72 58.3
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 4.5e-13 78.6 97 48.5
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.0e-12 77.4 108 48.1
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 1.3e-12 77.0 93 48.4
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 1.7e-12 76.6 76 56.6
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 2.9e-12 75.9 97 46.4
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 8.5e-12 74.3 123 44.7
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 5.5e-11 71.6 70 57.1
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 7.2e-11 71.2 97 45.4
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 3.6e-10 68.9 95 44.2
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 3.9e-09 65.5 89 41.6
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 3.3e-08 62.4 84 41.7
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 1.7e-07 60.1 82 43.9
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 1.7e-07 60.1 131 35.9
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 4.8e-07 58.5 79 50.6
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 4.8e-07 58.5 75 42.7
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 6.3e-07 58.2 62 54.8
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.4e-06 57.0 75 45.3


User provided reference genes

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