Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015786 Daucus carota HOM05D000252 ORTHO05D003750 2.1e-42 175.3 86 100.0
Dinv02326 Davidia involucrata HOM05D000252 ORTHO05D003750 4.1e-22 107.8 73 69.9
TAR629G1058 Trochodendron aralioides HOM05D000252 ORTHO05D003750 3.5e-21 104.8 70 71.4
CiPaw.16G072200 Carya illinoinensis HOM05D000252 ORTHO05D003750 4.5e-21 104.4 61 77.0
Ciclev10020565m.g Citrus clementina HOM05D000252 ORTHO05D003750 1.7e-20 102.4 73 65.8
Oeu034435.1 Olea europaea HOM05D000252 ORTHO05D003750 1.7e-20 102.4 68 66.2
EL10Ac1g01582 Beta vulgaris HOM05D000252 ORTHO05D003750 2.9e-20 101.7 60 76.7
FvH4_5g31670 Fragaria vesca HOM05D000252 ORTHO05D003750 2.9e-20 101.7 61 75.4
FAN18G0687 Fragaria x ananassa HOM05D000252 ORTHO05D003750 2.9e-20 101.7 61 75.4
MD14G1244800 Malus domestica HOM05D000252 ORTHO05D003750 2.9e-20 101.7 73 63.0
ECA232G1736 Erigeron canadensis HOM05D000252 ORTHO05D003750 3.8e-20 101.3 60 76.7
Peaxi162Scf00171g00341 Petunia axillaris HOM05D000252 ORTHO05D003750 3.8e-20 101.3 71 64.8
CAN.G1635.19 Capsicum annuum HOM05D000252 ORTHO05D003750 5.0e-20 100.9 73 61.6
DCAR_023253 Daucus carota HOM05D000252 ORTHO05D003750 5.0e-20 100.9 74 59.5
Rhsim12G0136800 Rhododendron simsii HOM05D000252 ORTHO05D003750 5.0e-20 100.9 70 68.6
CAN.G929.31 Capsicum annuum HOM05D000252 ORTHO05D003750 6.5e-20 100.5 73 60.3
Lj5C167G0 Lonicera japonica HOM05D000252 ORTHO05D003750 6.5e-20 100.5 62 74.2
FAN04G2881 Fragaria x ananassa HOM05D000252 ORTHO05D003750 8.5e-20 100.1 74 60.8
Manes.16G063200 Manihot esculenta HOM05D000252 ORTHO05D003750 8.5e-20 100.1 71 66.2
Psat1g120600 Pisum sativum HOM05D000252 ORTHO05D003750 8.5e-20 100.1 75 64.0
Sopen03g029200 Solanum pennellii HOM05D000252 ORTHO05D003750 1.1e-19 99.8 61 72.1
TPR.G24058 Trifolium pratense HOM05D000252 ORTHO05D003750 1.1e-19 99.8 73 65.8
Lsat_1_v5_gn_0_10320 Lactuca sativa HOM05D000252 ORTHO05D003750 1.5e-19 99.4 68 67.6
Lalb_Chr14g0370331 Lupinus albus HOM05D000252 ORTHO05D003750 1.5e-19 99.4 73 64.4
Prupe.5G242400 Prunus persica HOM05D000252 ORTHO05D003750 1.5e-19 99.4 69 63.8
PGSC0003DMG400010157 Solanum tuberosum HOM05D000252 ORTHO05D003750 1.5e-19 99.4 61 70.5
RcHm_v2.0_Chr6g0266921 Rosa chinensis HOM05D000252 ORTHO05D003750 1.9e-19 99.0 61 75.4
Solyc03g098460.3 Solanum lycopersicum HOM05D000252 ORTHO05D003750 1.9e-19 99.0 61 72.1
VMungo0464G0299 Vigna mungo HOM05D000252 ORTHO05D003750 1.9e-19 99.0 73 65.8
Sc19g0001440 Simmondsia chinensis HOM05D000252 ORTHO05D003750 2.5e-19 98.6 65 69.2
Cpa.g.sc111.32 Carica papaya HOM05D000252 ORTHO05D003750 3.2e-19 98.2 68 67.6
FAN08G1937 Fragaria x ananassa HOM05D000252 ORTHO05D003750 3.2e-19 98.2 61 72.1
Glyma.16G216200 Glycine max HOM05D000252 ORTHO05D003750 3.2e-19 98.2 73 65.8
Nn8g40351 Nelumbo nucifera HOM05D000252 ORTHO05D003750 3.2e-19 98.2 71 64.8
arahy.Tifrunner.gnm1.ann1.GR2Q8K Arachis hypogaea HOM05D000252 ORTHO05D003750 4.2e-19 97.8 67 70.1
CANSAT78G0333 Cannabis sativa HOM05D000252 ORTHO05D003750 4.2e-19 97.8 61 72.1
MD06G1238500 Malus domestica HOM05D000252 ORTHO05D003750 4.2e-19 97.8 73 60.3
ClCG04G012600 Citrullus lanatus HOM05D000252 ORTHO05D003750 5.5e-19 97.4 65 70.8
Glyma.09G166100 Glycine max HOM05D000252 ORTHO05D003750 5.5e-19 97.4 73 64.4
Lj2g0009530 Lotus japonicus HOM05D000252 ORTHO05D003750 5.5e-19 97.4 60 73.3
Nitab4.5_0004612g0050 Nicotiana tabacum HOM05D000252 ORTHO05D003750 5.5e-19 97.4 69 60.9
QL10p034566 Quercus lobata HOM05D000252 ORTHO05D003750 5.5e-19 97.4 61 72.1
Atru.chr9.356 Acer truncatum HOM05D000252 ORTHO05D003750 7.2e-19 97.1 61 72.1
Duzib205G1277 Durio zibethinus HOM05D000252 ORTHO05D003750 7.2e-19 97.1 60 71.7
Nitab4.5_0000782g0210 Nicotiana tabacum HOM05D000252 ORTHO05D003750 7.2e-19 97.1 64 67.2
RcHm_v2.0_Chr7g0227471 Rosa chinensis HOM05D000252 ORTHO05D003750 7.2e-19 97.1 61 73.8
Sed0008072 Sechium edule HOM05D000252 ORTHO05D003750 9.4e-19 96.7 60 73.3
TWI81G0629 Tripterygium wilfordii HOM05D000252 ORTHO05D003750 9.4e-19 96.7 73 61.6
Gohir.D07G125900 Gossypium hirsutum HOM05D000252 ORTHO05D003750 1.2e-18 96.3 61 73.8
Gorai.001G135900 Gossypium raimondii HOM05D000252 ORTHO05D003750 1.2e-18 96.3 61 73.8
PSO063G3479 Papaver somniferum HOM05D000252 ORTHO05D003750 1.2e-18 96.3 73 64.4
Ah.14g085740 Amaranthus hybridus HOM05D000252 ORTHO05D003750 1.6e-18 95.9 59 74.6
Cfa017789 Carpinus fangiana HOM05D000252 ORTHO05D003750 2.7e-18 95.1 61 70.5
THA.LOC104799962 Tarenaya hassleriana HOM05D000252 ORTHO05D003750 2.7e-18 95.1 61 70.5
HanXRQChr17g0545691 Helianthus annuus HOM05D000252 ORTHO05D003750 3.6e-18 94.7 67 65.7
MELO3C001948.2 Cucumis melo HOM05D000252 ORTHO05D003750 4.7e-18 94.4 60 71.7
CsaV3_1G005100 Cucumis sativus L. HOM05D000252 ORTHO05D003750 4.7e-18 94.4 60 71.7
MBI06_g12841_MAGBIO Magnolia biondii HOM05D000252 ORTHO05D003750 4.7e-18 94.4 61 72.1
Phvul.004G141700 Phaseolus vulgaris HOM05D000252 ORTHO05D003750 4.7e-18 94.4 60 71.7
vmacro16393 Vaccinium macrocarpon HOM05D000252 ORTHO05D003750 4.7e-18 94.4 58 74.1
GSVIVG01008620001 Vitis vinifera HOM05D000252 ORTHO05D003750 4.7e-18 94.4 60 73.3
CSS0037678 Camellia sinensis var. sinensis HOM05D000252 ORTHO05D003750 6.1e-18 94.0 61 70.5
PSO782G5092 Papaver somniferum HOM05D000252 ORTHO05D003750 6.1e-18 94.0 60 71.7
Thecc.03G072500 Theobroma cacao HOM05D000252 ORTHO05D003750 6.1e-18 94.0 61 68.9
Actinidia18874 Actinidia chinensis HOM05D000252 ORTHO05D003750 8.0e-18 93.6 73 61.6
Aqoxy3G04245 Aquilegia oxysepala HOM05D000252 ORTHO05D003750 8.0e-18 93.6 60 70.0
Haze_18427 Corylus avellana HOM05D000252 ORTHO05D003750 1.0e-17 93.2 60 70.0
FAN04G1645 Fragaria x ananassa HOM05D000038 ORTHO05D000423 1.0e-17 93.2 69 62.3
TWI15G0890 Tripterygium wilfordii HOM05D000252 ORTHO05D003750 1.4e-17 92.8 61 68.9
Potri.015G028900 Populus trichocarpa HOM05D000252 ORTHO05D003750 1.8e-17 92.4 61 65.6
PGR142G1142 Punica granatum HOM05D000252 ORTHO05D003750 1.8e-17 92.4 61 67.2
AL7G24890 Arabidopsis lyrata HOM05D000252 ORTHO05D003750 2.3e-17 92.0 74 58.1
arahy.Tifrunner.gnm1.ann1.KRCN8E Arachis hypogaea HOM05D000252 ORTHO05D003750 2.3e-17 92.0 60 70.0
Lalb_Chr24g0398501 Lupinus albus HOM05D000252 ORTHO05D003750 2.3e-17 92.0 73 60.3
C01p24150 Brassica napus HOM05D000252 ORTHO05D003750 3.0e-17 91.7 74 60.8
THA.LOC104811907 Tarenaya hassleriana HOM05D000252 ORTHO05D003750 3.0e-17 91.7 76 60.5
BcaC06g32666 Brassica carinata HOM05D000252 ORTHO05D003750 4.0e-17 91.3 69 60.9
BcaC09g50539 Brassica carinata HOM05D000252 ORTHO05D003750 4.0e-17 91.3 67 62.7
A01p19220 Brassica napus HOM05D000252 ORTHO05D003750 4.0e-17 91.3 67 62.7
BolC1t02372H Brassica oleracea HOM05D000252 ORTHO05D003750 4.0e-17 91.3 67 62.7
BraA01t01864Z Brassica rapa HOM05D000252 ORTHO05D003750 4.0e-17 91.3 67 62.7
Medtr6g081020 Medicago truncatula HOM05D000252 ORTHO05D003750 4.0e-17 91.3 59 69.5
A03p15370 Brassica napus HOM05D000223 ORTHO05D003750 5.2e-17 90.9 72 61.1
CDE04G1927 Ceratophyllum demersum HOM05D000252 ORTHO05D003750 5.2e-17 90.9 61 67.2
MSTRG.9711 Avicennia marina HOM05D000252 ORTHO05D003750 6.8e-17 90.5 69 60.9
BraA03t10830Z Brassica rapa HOM05D000252 ORTHO05D003750 6.8e-17 90.5 72 61.1
Sabra15G0024000 Salix brachista HOM05D000252 ORTHO05D003750 1.2e-16 89.7 61 65.6
Carub.0007s1305 Capsella rubella HOM05D000252 ORTHO05D003750 1.5e-16 89.4 67 61.2
Sp7g25730 Schrenkiella parvula HOM05D000252 ORTHO05D003750 1.5e-16 89.4 73 57.5
BcaNung01622 Brassica carinata HOM05D000252 ORTHO05D003750 2.0e-16 89.0 76 57.9
Carub.0008s1330 Capsella rubella HOM05D000252 ORTHO05D003750 2.0e-16 89.0 67 61.2
CARHR235490 Cardamine hirsuta HOM05D000252 ORTHO05D003750 2.0e-16 89.0 74 55.4
Thhalv10025479m.g Eutrema salsugineum HOM05D000252 ORTHO05D003750 2.0e-16 89.0 71 54.9
SGA_v2.0_scaffold1368G53928 Striga asiatica HOM05D000252 ORTHO05D003750 2.0e-16 89.0 61 65.6
SGA_v2.0_scaffold164G38115 Striga asiatica HOM05D004919 ORTHO05D005994 2.0e-16 89.0 61 65.6
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 2.0e-16 89.0 61 65.6
AT4G27760 Arabidopsis thaliana HOM05D000252 ORTHO05D003750 2.6e-16 88.6 61 63.9
Sp6g15260 Schrenkiella parvula HOM05D000252 ORTHO05D003750 2.6e-16 88.6 64 62.5
Migut.D02061 Erythranthe guttata HOM05D000252 ORTHO05D003750 3.4e-16 88.2 69 58.0
BcaC01g06222 Brassica carinata HOM05D000223 ORTHO05D003750 4.4e-16 87.8 72 59.7
C03p17970 Brassica napus HOM05D000223 ORTHO05D003750 4.4e-16 87.8 72 59.7
BraA03t14817Z Brassica rapa HOM05D000252 ORTHO05D003750 5.7e-16 87.4 72 59.7
FvH4_5g31671 Fragaria vesca HOM05D000252 ORTHO05D003750 7.5e-16 87.0 69 59.4
BcaB05g22008 Brassica carinata HOM05D000252 ORTHO05D003750 9.8e-16 86.7 61 63.9
BcaB05g22011 Brassica carinata HOM05D000252 ORTHO05D003750 9.8e-16 86.7 61 63.9
BcaC03g14457 Brassica carinata HOM05D000252 ORTHO05D003750 9.8e-16 86.7 61 63.9
C02p18680 Brassica napus HOM05D000252 ORTHO05D003750 9.8e-16 86.7 61 63.9
BolC2t08013H Brassica oleracea HOM05D000252 ORTHO05D003750 9.8e-16 86.7 61 63.9
Carub.0008s1329 Capsella rubella HOM05D000252 ORTHO05D003750 9.8e-16 86.7 74 56.8
Eucgr.I02747 Eucalyptus grandis HOM05D000252 ORTHO05D003750 9.8e-16 86.7 61 63.9
Thhalv10013852m.g Eutrema salsugineum HOM05D000252 ORTHO05D003750 9.8e-16 86.7 61 63.9
Aa31LG3G9370 Aethionema arabicum HOM05D000252 ORTHO05D003750 1.3e-15 86.3 61 63.9
Aa31LG3G9380 Aethionema arabicum HOM05D000252 ORTHO05D003750 1.3e-15 86.3 61 63.9
AT5G53090 Arabidopsis thaliana HOM05D000252 ORTHO05D003750 2.2e-15 85.5 73 58.9
A02p11300 Brassica napus HOM05D000252 ORTHO05D003750 2.2e-15 85.5 74 54.1
Gohir.D04G187600 Gossypium hirsutum HOM05D000252 ORTHO05D003750 2.8e-15 85.1 61 62.3
Gorai.012G180800 Gossypium raimondii HOM05D000252 ORTHO05D003750 2.8e-15 85.1 61 62.3
SGA_v2.0_scaffold164G38109 Striga asiatica HOM05D000252 ORTHO05D003750 2.8e-15 85.1 61 63.9
MSTRG.4321 Avicennia marina HOM05D000252 ORTHO05D003750 3.7e-15 84.7 69 58.0
Aa31LG3G2830 Aethionema arabicum HOM05D000252 ORTHO05D003750 6.3e-15 84.0 61 63.9
Gohir.A04G141300 Gossypium hirsutum HOM05D000252 ORTHO05D003750 6.3e-15 84.0 61 60.7
Rhsim08G0206000 Rhododendron simsii HOM05D000252 ORTHO05D003750 6.3e-15 84.0 60 61.7
Rhsim08G0206100 Rhododendron simsii HOM05D000252 ORTHO05D003750 6.3e-15 84.0 60 63.3
SGA_v2.0_scaffold164G38113 Striga asiatica HOM05D000252 ORTHO05D003750 8.3e-15 83.6 61 62.3
CSS0000957 Camellia sinensis var. sinensis HOM05D000252 ORTHO05D003750 1.1e-14 83.2 61 59.0
CARHR266120 Cardamine hirsuta HOM05D000252 ORTHO05D003750 1.1e-14 83.2 61 62.3
AL8G27720 Arabidopsis lyrata HOM05D000252 ORTHO05D003750 1.4e-14 82.8 61 63.9
AT5G53100 Arabidopsis thaliana HOM05D000252 ORTHO05D003750 1.4e-14 82.8 63 60.3
CARHR266110 Cardamine hirsuta HOM05D000252 ORTHO05D003750 1.4e-14 82.8 67 56.7
Oeu016048.1 Olea europaea HOM05D000252 ORTHO05D003750 1.4e-14 82.8 54 68.5
ATR0568G038 Amborella trichopoda HOM05D000252 ORTHO05D003750 1.8e-14 82.4 61 60.7
unitig_0.g29 Utricularia gibba HOM05D002770 ORTHO05D003750 3.1e-14 81.6 74 50.0
Thhalv10013865m.g Eutrema salsugineum HOM05D000252 ORTHO05D003750 4.1e-14 81.3 68 55.9
vmacro19054 Vaccinium macrocarpon HOM05D000252 ORTHO05D003750 4.1e-14 81.3 60 60.0
BraA02t06192Z Brassica rapa HOM05D000252 ORTHO05D003750 7.0e-14 80.5 61 60.7
Actinidia25482 Actinidia chinensis HOM05D000252 ORTHO05D003750 1.6e-13 79.3 60 58.3
Peaxi162Scf00835g00014 Petunia axillaris HOM05D000252 ORTHO05D003750 5.9e-13 77.4 61 55.7
BcaC03g17025 Brassica carinata HOM05D000252 ORTHO05D003750 7.7e-13 77.0 61 57.4
C02p49380 Brassica napus HOM05D000252 ORTHO05D003750 7.7e-13 77.0 61 57.4
BolC2t11024H Brassica oleracea HOM05D000252 ORTHO05D003750 7.7e-13 77.0 61 57.4
Nitab4.5_0001271g0050 Nicotiana tabacum HOM05D000252 ORTHO05D003750 1.0e-12 76.6 61 55.7
Sabra01G0031000 Salix brachista HOM05D000252 ORTHO05D003750 5.0e-12 74.3 74 51.4
Sopen12g021790 Solanum pennellii HOM05D000252 ORTHO05D003750 1.9e-11 72.4 59 54.2
Solyc12g042640.1 Solanum lycopersicum HOM05D000252 ORTHO05D003750 2.5e-11 72.0 59 54.2
SEGI_29470 Sequoiadendron giganteum HOM05D000252 ORTHO05D003750 3.3e-11 71.6 63 50.8
BolC3t14203H Brassica oleracea HOM05D000223 ORTHO05D003750 7.2e-11 70.5 58 58.6
Zm00001eb229940 Zea mays HOM05D000252 ORTHO05D003750 7.2e-11 70.5 61 52.5
Potri.003G182000 Populus trichocarpa HOM05D000252 ORTHO05D003750 9.5e-11 70.1 60 60.0
Sabra03G0132900 Salix brachista HOM05D000252 ORTHO05D003750 9.5e-11 70.1 79 49.4
Zm00001eb209490 Zea mays HOM05D000252 ORTHO05D003750 1.2e-10 69.7 61 54.1
C07p55690 Brassica napus HOM05D000252 ORTHO05D003750 2.1e-10 68.9 54 55.6
BolC7t46050H Brassica oleracea HOM05D000252 ORTHO05D003750 2.1e-10 68.9 54 55.6
Os02g0116500 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D003750 3.6e-10 68.2 61 50.8
HanXRQChr07g0200641 Helianthus annuus HOM05D000252 ORTHO05D003750 6.1e-10 67.4 60 51.7
Cc04_g05070 Coffea canephora HOM05D000252 ORTHO05D003750 8.0e-10 67.0 68 48.5
PGSC0003DMG400028647 Solanum tuberosum HOM05D000252 ORTHO05D003750 1.4e-09 66.2 58 51.7
A03p57490 Brassica napus HOM05D000252 ORTHO05D003750 4.0e-09 64.7 51 60.8
SalBow8G5481 Salvia bowleyana HOM05D000252 ORTHO05D003750 5.2e-09 64.3 49 61.2
SHI19115 Sapria himalayana HOM05D000252 ORTHO05D003750 1.3e-07 59.7 58 55.2
Hma1.2p1_0493F.1_g164950 Hydrangea macrophylla HOM05D000252 ORTHO05D003750 2.2e-07 58.9 41 75.6
DCAR_007437 Daucus carota HOM05D000252 ORTHO05D003750 4.9e-07 57.8 44 56.8
DCAR_017784 Daucus carota HOM05D000252 ORTHO05D003750 6.3e-07 57.4 44 56.8


User provided reference genes

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