Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 3.2e-113 411.8 208 100.0
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 9.8e-70 267.3 208 69.7
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 1.4e-68 263.5 208 66.3
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 7.0e-68 261.2 211 68.2
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 7.0e-68 261.2 209 68.9
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 7.0e-68 261.2 209 68.9
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 7.0e-68 261.2 209 68.9
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.6e-67 260.0 208 67.3
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 3.5e-67 258.8 208 64.4
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 3.5e-67 258.8 208 64.4
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 1.0e-66 257.3 208 64.4
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 2.9e-66 255.8 208 67.8
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 2.9e-66 255.8 206 63.6
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 2.5e-65 252.7 208 67.3
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 3.3e-65 252.3 208 64.9
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 5.5e-65 251.5 208 65.4
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 5.5e-65 251.5 203 65.0
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 9.5e-65 250.8 208 64.9
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 9.5e-65 250.8 208 63.0
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.2e-64 250.4 208 66.3
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 3.6e-64 248.8 208 63.5
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 3.6e-64 248.8 209 64.6
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 8.0e-64 247.7 205 63.9
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.0e-63 247.3 209 64.1
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 2.3e-63 246.1 208 62.5
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 2.3e-63 246.1 208 63.5
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 2.3e-63 246.1 209 64.1
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.0e-63 245.7 237 57.8
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 3.0e-63 245.7 210 62.4
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 5.2e-63 245.0 210 63.8
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 5.2e-63 245.0 217 63.6
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 6.8e-63 244.6 209 64.1
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 6.8e-63 244.6 208 62.5
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 8.9e-63 244.2 237 57.4
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 8.9e-63 244.2 237 57.4
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 8.9e-63 244.2 205 62.4
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 8.9e-63 244.2 210 61.9
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 8.9e-63 244.2 208 62.5
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 1.2e-62 243.8 214 63.6
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.2e-62 243.8 207 63.3
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 2.6e-62 242.7 208 62.5
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 2.6e-62 242.7 208 62.5
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 4.4e-62 241.9 229 60.7
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 5.7e-62 241.5 208 59.6
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 7.5e-62 241.1 208 61.1
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 7.5e-62 241.1 208 61.1
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.3e-61 240.4 214 60.3
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 1.7e-61 240.0 208 59.6
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 1.7e-61 240.0 214 62.1
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 2.2e-61 239.6 208 59.6
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 2.8e-61 239.2 210 62.9
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 2.8e-61 239.2 206 63.6
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 2.8e-61 239.2 229 57.6
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 4.9e-61 238.4 208 62.0
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 8.3e-61 237.7 211 60.7
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 8.3e-61 237.7 208 61.1
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 1.1e-60 237.3 206 60.2
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 1.4e-60 236.9 204 62.7
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 1.8e-60 236.5 208 59.6
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 2.4e-60 236.1 208 59.6
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 3.1e-60 235.7 208 60.1
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 3.1e-60 235.7 208 59.1
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 4.1e-60 235.3 208 59.1
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 5.4e-60 235.0 214 61.7
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 7.0e-60 234.6 208 59.1
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 7.0e-60 234.6 208 59.1
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 9.2e-60 234.2 208 58.7
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 9.2e-60 234.2 208 58.7
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 9.2e-60 234.2 205 62.4
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 1.2e-59 233.8 210 61.0
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 1.2e-59 233.8 201 62.2
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 1.2e-59 233.8 232 58.6
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.6e-59 233.4 208 60.6
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 2.0e-59 233.0 208 57.7
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 2.0e-59 233.0 208 58.7
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 2.0e-59 233.0 208 57.7
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 2.7e-59 232.6 201 60.2
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 2.7e-59 232.6 201 60.2
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 2.7e-59 232.6 201 60.2
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 4.5e-59 231.9 205 60.5
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.5e-59 231.9 205 60.5
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 4.5e-59 231.9 208 59.1
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 5.9e-59 231.5 208 58.2
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 5.9e-59 231.5 208 57.7
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 7.8e-59 231.1 208 57.7
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 7.8e-59 231.1 203 60.1
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 7.8e-59 231.1 210 61.0
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.3e-58 230.3 205 61.0
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 1.7e-58 229.9 208 57.7
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 1.7e-58 229.9 209 58.4
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 2.3e-58 229.6 208 57.7
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 2.3e-58 229.6 208 57.7
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 2.3e-58 229.6 209 58.4
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 2.3e-58 229.6 198 61.6
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 2.9e-58 229.2 204 58.8
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 8.6e-58 227.6 194 60.8
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 1.5e-57 226.9 205 58.5
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 4.3e-57 225.3 209 58.9
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.3e-57 224.6 237 54.0
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 1.6e-56 223.4 199 61.3
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 3.6e-56 222.2 196 59.7
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.8e-55 219.9 205 59.5
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 5.2e-55 218.4 206 56.3
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 8.9e-55 217.6 201 57.2
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 2.0e-54 216.5 216 54.6
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 4.4e-54 215.3 206 55.8
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 1.7e-53 213.4 211 55.9
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.9e-53 211.8 172 63.4
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 6.4e-53 211.5 202 55.4
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 4.1e-52 208.8 210 55.2
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 6.0e-51 204.9 179 60.3
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 6.0e-51 204.9 215 55.3
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 7.8e-51 204.5 268 46.3
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 3.9e-50 202.2 208 51.4
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 9.8e-46 187.6 153 63.4
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 1.7e-45 186.8 209 51.2
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 1.2e-43 180.6 208 51.9
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 2.8e-40 169.5 146 58.9
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.1e-36 157.5 206 45.1
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 1.0e-34 151.0 101 73.3
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 1.9e-33 146.7 146 52.1
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 7.3e-33 144.8 149 51.0
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 4.7e-32 142.1 104 67.3
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 3.4e-30 136.0 176 40.9
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.7e-29 133.7 101 62.4
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 3.8e-29 132.5 104 61.5
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 3.8e-29 132.5 152 52.0
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 4.9e-29 132.1 92 70.7
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 4.9e-29 132.1 92 70.7
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 4.2e-28 129.0 102 63.7
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 4.2e-28 129.0 185 36.2
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 3.5e-27 125.9 145 48.3
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 8.1e-24 114.8 63 85.7
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 2.4e-23 113.2 147 45.6
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.2e-22 110.9 64 82.8
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 5.8e-22 108.6 105 54.3
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 9.9e-22 107.8 110 54.5
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 2.2e-21 106.7 61 80.3
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.9e-21 106.3 112 51.8
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 3.2e-20 102.8 83 60.2
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 1.0e-18 97.8 62 72.6
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.3e-18 97.4 111 48.6
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 1.7e-18 97.1 145 33.8
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 1.7e-18 97.1 86 54.7
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 2.4e-15 86.7 50 82.0
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.4e-14 82.8 104 47.1
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 3.4e-14 82.8 137 32.1
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 6.4e-13 78.6 143 28.0
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 1.6e-11 73.9 139 31.7
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 8.7e-10 68.2 169 27.8
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 2.6e-06 56.6 32 81.2


User provided reference genes

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