Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015728 Daucus carota HOM05D002657 ORTHO05D003059 2.1e-103 379.0 188 100.0
CSS0013936 Camellia sinensis var. sinensis HOM05D002657 ORTHO05D003059 6.6e-25 118.2 108 60.2
CiPaw.06G035300 Carya illinoinensis HOM05D002657 ORTHO05D003059 4.3e-24 115.5 97 66.0
Dinv17247 Davidia involucrata HOM05D002657 ORTHO05D003059 1.6e-23 113.6 99 63.6
COL.COLO4_15190 Corchorus olitorius HOM05D002657 ORTHO05D003059 1.4e-22 110.5 99 59.6
Duzib106G0276 Durio zibethinus HOM05D002657 ORTHO05D003059 1.4e-22 110.5 108 56.5
TWI60G0601 Tripterygium wilfordii HOM05D002657 ORTHO05D003059 3.1e-22 109.4 99 60.6
Prupe.2G328200 Prunus persica HOM05D002657 ORTHO05D003059 1.5e-21 107.1 99 61.6
Sabra13G0073700 Salix brachista HOM05D002657 ORTHO05D003059 3.4e-21 105.9 138 46.4
GSVIVG01024346001 Vitis vinifera HOM05D002657 ORTHO05D003059 5.8e-21 105.1 90 65.6
Actinidia34325 Actinidia chinensis HOM05D002657 ORTHO05D003059 7.6e-21 104.8 99 57.6
Duzib177G1021 Durio zibethinus HOM05D002657 ORTHO05D003059 7.6e-21 104.8 95 58.9
Lalb_Chr16g0376551 Lupinus albus HOM05D002657 ORTHO05D003059 1.7e-20 103.6 99 59.6
PGR042G1453 Punica granatum HOM05D002657 ORTHO05D003059 1.7e-20 103.6 138 44.2
Solyc03g097190.3 Solanum lycopersicum HOM05D002657 ORTHO05D003059 4.9e-20 102.1 116 52.6
Eucgr.A02985 Eucalyptus grandis HOM05D002657 ORTHO05D003059 8.4e-20 101.3 99 54.5
SalBow2G3352 Salvia bowleyana HOM05D002657 ORTHO05D003059 8.4e-20 101.3 108 53.7
MELO3C021858.2 Cucumis melo HOM05D002657 ORTHO05D003059 1.1e-19 100.9 97 54.6
Migut.F00936 Erythranthe guttata HOM05D002657 ORTHO05D003059 1.1e-19 100.9 121 47.9
Lalb_Chr05g0211221 Lupinus albus HOM05D002657 ORTHO05D003059 1.1e-19 100.9 99 56.6
FAN10G3406 Fragaria x ananassa HOM05D002657 ORTHO05D003059 1.4e-19 100.5 94 59.6
Lj3A885T45 Lonicera japonica HOM05D002657 ORTHO05D003059 2.4e-19 99.8 108 54.6
Sc17g0005660 Simmondsia chinensis HOM05D002657 ORTHO05D003059 3.2e-19 99.4 97 57.7
Ca_24433_v3 Cicer arietinum L. HOM05D002657 ORTHO05D003059 4.2e-19 99.0 121 48.8
FAN03G3506 Fragaria x ananassa HOM05D002657 ORTHO05D003059 4.2e-19 99.0 94 58.5
Lalb_Chr19g0140011 Lupinus albus HOM05D002657 ORTHO05D003059 4.2e-19 99.0 99 54.5
TWI34G0829 Tripterygium wilfordii HOM05D002657 ORTHO05D003059 4.2e-19 99.0 99 55.6
Manes.09G128400 Manihot esculenta HOM05D002657 ORTHO05D003059 5.4e-19 98.6 99 55.6
CsaV3_2G036640 Cucumis sativus L. HOM05D002657 ORTHO05D003059 7.1e-19 98.2 94 55.3
Lalb_Chr09g0320111 Lupinus albus HOM05D002657 ORTHO05D003059 7.1e-19 98.2 95 58.9
MD01G1238300 Malus domestica HOM05D002657 ORTHO05D003059 7.1e-19 98.2 97 60.8
LjContig00222g0028031 Lotus japonicus HOM05D002657 ORTHO05D003059 1.2e-18 97.4 99 55.6
RcHm_v2.0_Chr1g0384501 Rosa chinensis HOM05D002657 ORTHO05D003059 1.6e-18 97.1 94 57.4
TPR.G38027 Trifolium pratense HOM05D002657 ORTHO05D003059 1.6e-18 97.1 134 45.5
Ca_27636_v3 Cicer arietinum L. HOM05D002657 ORTHO05D003059 2.1e-18 96.7 99 55.6
MD01G1237800 Malus domestica HOM05D002657 ORTHO05D003059 2.1e-18 96.7 97 58.8
Lj3g0004765 Lotus japonicus HOM05D002657 ORTHO05D003059 3.5e-18 95.9 99 56.6
Sopen03g027950 Solanum pennellii HOM05D002657 ORTHO05D003059 3.5e-18 95.9 108 52.8
Nitab4.5_0000021g0730 Nicotiana tabacum HOM05D002657 ORTHO05D003059 4.6e-18 95.5 92 59.8
Sed0014338 Sechium edule HOM05D002657 ORTHO05D003059 4.6e-18 95.5 92 54.3
Migut.F00080 Erythranthe guttata HOM05D002657 ORTHO05D003059 7.8e-18 94.7 121 47.1
FvH4_7g34141 Fragaria vesca HOM05D002657 ORTHO05D003059 7.8e-18 94.7 92 57.6
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 7.8e-18 94.7 92 57.6
EL10Ac8g20570 Beta vulgaris HOM05D002657 ORTHO05D003059 1.0e-17 94.4 106 47.2
QL09p021240 Quercus lobata HOM05D002657 ORTHO05D003059 3.0e-17 92.8 80 63.8
PGSC0003DMG400003163 Solanum tuberosum HOM05D002657 ORTHO05D003059 3.9e-17 92.4 101 53.5
CiPaw.05G214700 Carya illinoinensis HOM05D002657 ORTHO05D003059 5.1e-17 92.0 82 62.2
Cfa016065 Carpinus fangiana HOM05D002657 ORTHO05D003059 6.6e-17 91.7 76 64.5
Nitab4.5_0004530g0080 Nicotiana tabacum HOM05D002657 ORTHO05D003059 8.7e-17 91.3 86 60.5
Cc01_g00970 Coffea canephora HOM05D002657 ORTHO05D003059 1.9e-16 90.1 82 62.2
Actinidia08759 Actinidia chinensis HOM05D002657 ORTHO05D003059 2.5e-16 89.7 99 54.5
Gorai.007G348400 Gossypium raimondii HOM05D002657 ORTHO05D003059 2.5e-16 89.7 99 53.5
Glyma.11G009200 Glycine max HOM05D002657 ORTHO05D003059 3.3e-16 89.4 92 55.4
Gohir.A02G127400 Gossypium hirsutum HOM05D002657 ORTHO05D003059 3.3e-16 89.4 77 61.0
Medtr5g007350 Medicago truncatula HOM05D002657 ORTHO05D003059 3.3e-16 89.4 94 53.2
Gohir.A11G303100 Gossypium hirsutum HOM05D002657 ORTHO05D003059 4.3e-16 89.0 99 52.5
Sc05g0006950 Simmondsia chinensis HOM05D002657 ORTHO05D003059 4.3e-16 89.0 95 53.7
Gohir.D03G053600 Gossypium hirsutum HOM05D002657 ORTHO05D003059 5.6e-16 88.6 75 62.7
Atru.chr12.1915 Acer truncatum HOM05D002657 ORTHO05D003059 7.3e-16 88.2 90 54.4
Gohir.D11G318400 Gossypium hirsutum HOM05D002657 ORTHO05D003059 7.3e-16 88.2 99 52.5
Nitab4.5_0000115g0370 Nicotiana tabacum HOM05D002657 ORTHO05D003059 9.6e-16 87.8 102 49.0
arahy.Tifrunner.gnm1.ann1.0CRJ7F Arachis hypogaea HOM05D002657 ORTHO05D003059 1.3e-15 87.4 86 53.5
SGA_v2.0_scaffold50G18450 Striga asiatica HOM05D002657 ORTHO05D003059 1.6e-15 87.0 121 43.0
unitig_90.g27540 Utricularia gibba HOM05D002657 ORTHO05D003059 2.1e-15 86.7 107 46.7
Nitab4.5_0002998g0040 Nicotiana tabacum HOM05D002657 ORTHO05D003059 2.8e-15 86.3 98 49.0
Oeu007519.1 Olea europaea HOM05D002657 ORTHO05D003059 2.8e-15 86.3 81 63.0
PSO063G0986 Papaver somniferum HOM05D002657 ORTHO05D003059 2.8e-15 86.3 99 51.5
Lalb_Chr01g0000851 Lupinus albus HOM05D002657 ORTHO05D003059 4.8e-15 85.5 85 55.3
arahy.Tifrunner.gnm1.ann1.51ZP46 Arachis hypogaea HOM05D002657 ORTHO05D003059 1.1e-14 84.3 82 53.7
Aqoxy3G02354 Aquilegia oxysepala HOM05D002657 ORTHO05D003059 2.4e-14 83.2 99 49.5
Hund21160 Selenicereus undatus HOM05D002657 ORTHO05D003059 2.4e-14 83.2 98 48.0
VMungo1127G0287 Vigna mungo HOM05D002657 ORTHO05D003059 2.4e-14 83.2 82 54.9
Lsat_1_v5_gn_9_47741 Lactuca sativa HOM05D002657 ORTHO05D003059 1.5e-13 80.5 83 55.4
SalBow4G0313 Salvia bowleyana HOM05D002657 ORTHO05D003059 1.5e-13 80.5 87 51.7
SalBow4G0550 Salvia bowleyana HOM05D002657 ORTHO05D003059 1.5e-13 80.5 87 51.7
Gohir.A08G221658 Gossypium hirsutum HOM05D002657 ORTHO05D003059 2.0e-13 80.1 73 58.9
MBI04_g41611_MAGBIO Magnolia biondii HOM05D002657 ORTHO05D003059 4.5e-13 79.0 99 48.5
Thhalv10024236m.g Eutrema salsugineum HOM05D002657 ORTHO05D003059 7.6e-13 78.2 98 44.9
arahy.Tifrunner.gnm1.ann1.M9YASY Arachis hypogaea HOM05D002657 ORTHO05D003059 9.9e-13 77.8 88 51.1
CDE06G2095 Ceratophyllum demersum HOM05D002657 ORTHO05D003059 9.9e-13 77.8 94 50.0
CSS0037437 Camellia sinensis var. sinensis HOM05D002657 ORTHO05D003059 1.3e-12 77.4 99 47.5
CSS0045858 Camellia sinensis var. sinensis HOM05D002657 ORTHO05D003059 1.3e-12 77.4 99 47.5
Glyma.11G108500 Glycine max HOM05D002657 ORTHO05D003059 2.9e-12 76.3 82 51.2
Gohir.D08G241100 Gossypium hirsutum HOM05D002657 ORTHO05D003059 3.8e-12 75.9 70 58.6
CAN.G1131.29 Capsicum annuum HOM05D002657 ORTHO05D003059 6.4e-12 75.1 89 48.3
ECA232G4815 Erigeron canadensis HOM05D002657 ORTHO05D003059 1.4e-11 73.9 84 52.4
CSS0006811 Camellia sinensis var. sinensis HOM05D002657 ORTHO05D003059 2.4e-11 73.2 64 60.9
Peaxi162Scf00516g00642 Petunia axillaris HOM05D002657 ORTHO05D003059 2.4e-11 73.2 76 53.9
AT4G27595 Arabidopsis thaliana HOM05D002657 ORTHO05D003059 5.4e-11 72.0 98 42.9
BcaB03g12538 Brassica carinata HOM05D002657 ORTHO05D003059 5.4e-11 72.0 98 40.8
AUR62039465 Chenopodium quinoa HOM05D002657 ORTHO05D003059 7.1e-11 71.6 61 62.3
Ciclev10030659m.g Citrus clementina HOM05D002657 ORTHO05D003059 7.1e-11 71.6 74 50.0
Oeu027888.1 Olea europaea HOM05D002657 ORTHO05D003059 1.2e-10 70.9 56 67.9
Manes.08G064501 Manihot esculenta HOM05D002657 ORTHO05D003059 1.6e-10 70.5 60 63.3
MSTRG.7 Avicennia marina HOM05D002657 ORTHO05D003059 2.7e-10 69.7 64 54.7
Gorai.003G055800 Gossypium raimondii HOM05D002657 ORTHO05D003059 2.7e-10 69.7 52 69.2
Peaxi162Scf00815g00358 Petunia axillaris HOM05D002657 ORTHO05D003059 4.6e-10 68.9 68 55.9
vmacro06532 Vaccinium macrocarpon HOM05D002657 ORTHO05D003059 6.0e-10 68.6 55 65.5
Gorai.004G256500 Gossypium raimondii HOM05D002657 ORTHO05D003059 7.9e-10 68.2 69 56.5
Psat2g189280 Pisum sativum HOM05D002657 ORTHO05D003059 7.9e-10 68.2 72 55.6
PGSC0003DMG400027037 Solanum tuberosum HOM05D002657 ORTHO05D003059 1.0e-09 67.8 76 48.7
THA.LOC104824563 Tarenaya hassleriana HOM05D002657 ORTHO05D003059 1.3e-09 67.4 76 47.4
VMungo1215G0687 Vigna mungo HOM05D002657 ORTHO05D003059 1.3e-09 67.4 67 59.7
Phvul.002G041100 Phaseolus vulgaris HOM05D002657 ORTHO05D003059 3.0e-09 66.2 64 57.8
CAN.G65.127 Capsicum annuum HOM05D002657 ORTHO05D003059 3.9e-09 65.9 68 52.9
Potri.019G047600 Populus trichocarpa HOM05D002657 ORTHO05D003059 5.1e-09 65.5 63 54.0
C02p21090 Brassica napus HOM05D002657 ORTHO05D003059 8.7e-09 64.7 98 41.8
AUR62027711 Chenopodium quinoa HOM05D002657 ORTHO05D003059 8.7e-09 64.7 55 60.0
Glyma.01G233600 Glycine max HOM05D002657 ORTHO05D003059 8.7e-09 64.7 56 62.5
THA.LOC104827197 Tarenaya hassleriana HOM05D002657 ORTHO05D003059 8.7e-09 64.7 67 52.2
arahy.Tifrunner.gnm1.ann1.6I6CSY Arachis hypogaea HOM05D002657 ORTHO05D003059 1.5e-08 63.9 65 56.9
Potri.013G079000 Populus trichocarpa HOM05D002657 ORTHO05D003059 1.9e-08 63.5 61 54.1
Sabra19G0059600 Salix brachista HOM05D002657 ORTHO05D003059 1.9e-08 63.5 63 52.4
Ah.08g218170 Amaranthus hybridus HOM05D002657 ORTHO05D003059 2.5e-08 63.2 107 39.3
BcaB05g25318 Brassica carinata HOM05D002657 ORTHO05D003059 2.5e-08 63.2 103 43.7
A02p12970 Brassica napus HOM05D002657 ORTHO05D003059 4.3e-08 62.4 98 40.8
BraA02t06353Z Brassica rapa HOM05D002657 ORTHO05D003059 4.3e-08 62.4 98 40.8
Thhalv10022460m.g Eutrema salsugineum HOM05D002657 ORTHO05D003059 7.4e-08 61.6 76 43.4
CDE06G2427 Ceratophyllum demersum HOM05D002657 ORTHO05D003059 1.3e-07 60.8 95 37.9
CDE12G0025 Ceratophyllum demersum HOM05D002657 ORTHO05D003059 1.3e-07 60.8 99 35.4
Nn1g05150 Nelumbo nucifera HOM05D002657 ORTHO05D003059 2.8e-07 59.7 99 40.4
Ah.15g092810 Amaranthus hybridus HOM05D002574 ORTHO05D002797 3.7e-07 59.3 57 54.4
ATR0665G660 Amborella trichopoda HOM05D002657 ORTHO05D003059 3.7e-07 59.3 70 52.9
Carub.0003s0206 Capsella rubella HOM05D002657 ORTHO05D003059 3.7e-07 59.3 98 37.8
TPR.G19616 Trifolium pratense HOM05D002657 ORTHO05D003059 4.8e-07 58.9 63 54.0
Oeu038085.1 Olea europaea HOM05D002657 ORTHO05D003059 6.2e-07 58.5 64 56.2
Peaxi162Scf00133g00055 Petunia axillaris HOM05D002657 ORTHO05D003059 6.2e-07 58.5 95 43.2
Actinidia28411 Actinidia chinensis HOM05D002657 ORTHO05D003059 8.1e-07 58.2 103 42.7
DCAR_009555 Daucus carota HOM05D000747 ORTHO05D001683 1.1e-06 57.8 192 26.6
Psat2g144480 Pisum sativum HOM05D002657 ORTHO05D003059 1.1e-06 57.8 60 55.0
THA.LOC109117075 Tarenaya hassleriana HOM05D002657 ORTHO05D012605 1.1e-06 57.8 99 35.4
Glyma.12G016900 Glycine max HOM05D002657 ORTHO05D003059 1.8e-06 57.0 60 50.0
Solyc04g076620.4 Solanum lycopersicum HOM05D000747 ORTHO05D001683 3.1e-06 56.2 71 42.3
Sopen04g030340 Solanum pennellii HOM05D000747 ORTHO05D001683 3.1e-06 56.2 71 42.3
Sc15g0003080 Simmondsia chinensis HOM05D000747 ORTHO05D001683 4.0e-06 55.8 207 26.6
PSO782G1876 Papaver somniferum HOM05D002657 ORTHO05D003059 5.3e-06 55.5 87 41.4
AL6G27740 Arabidopsis lyrata HOM05D002657 ORTHO05D003059 6.9e-06 55.1 52 53.8
Manes.18G057015 Manihot esculenta HOM05D000747 ORTHO05D001683 9.0e-06 54.7 198 26.8
Phvul.011G019100 Phaseolus vulgaris HOM05D002657 ORTHO05D003059 9.0e-06 54.7 51 54.9
Rhsim03G0223300 Rhododendron simsii HOM05D002657 ORTHO05D003059 9.0e-06 54.7 67 52.2


User provided reference genes

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