Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 9.4e-127 456.8 225 100.0
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 7.0e-98 360.9 223 74.9
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 9.2e-98 360.5 223 73.5
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 6.6e-96 354.4 222 73.4
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 8.6e-96 354.0 223 72.6
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 1.5e-95 353.2 223 74.0
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 3.3e-95 352.1 223 72.6
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 3.6e-94 348.6 223 72.2
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 1.4e-93 346.7 223 70.9
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 1.8e-93 346.3 223 70.9
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 2.3e-93 345.9 223 70.9
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 3.4e-92 342.0 223 69.1
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 5.8e-92 341.3 224 72.3
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 7.5e-92 340.9 225 68.9
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 1.7e-91 339.7 226 68.1
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 2.2e-91 339.3 223 70.9
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 2.9e-91 339.0 223 69.5
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 3.7e-91 338.6 222 70.7
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 4.9e-91 338.2 220 70.9
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 2.4e-90 335.9 223 69.1
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 3.2e-90 335.5 223 71.3
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 3.2e-90 335.5 223 70.0
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 4.1e-90 335.1 222 69.4
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 2.0e-89 332.8 226 67.7
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 2.7e-89 332.4 233 67.8
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 3.5e-89 332.0 238 67.6
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 7.8e-89 330.9 223 70.4
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 2.3e-88 329.3 223 65.9
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 4.3e-87 325.1 223 67.3
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 5.6e-87 324.7 223 65.9
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 2.1e-86 322.8 220 67.7
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 1.1e-85 320.5 224 68.3
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 1.4e-85 320.1 223 66.8
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 1.4e-85 320.1 231 64.1
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 1.8e-85 319.7 222 68.5
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 3.1e-85 318.9 222 67.1
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 4.0e-85 318.5 220 66.4
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 4.0e-85 318.5 223 65.9
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 6.8e-85 317.8 223 65.0
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 6.8e-85 317.8 222 65.8
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 8.9e-85 317.4 223 65.9
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 8.9e-85 317.4 223 65.0
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 1.5e-84 316.6 223 65.0
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.0e-84 316.2 221 65.2
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 2.6e-84 315.8 223 65.0
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 3.4e-84 315.5 222 64.4
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 4.4e-84 315.1 221 64.7
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 4.4e-84 315.1 206 70.4
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 5.8e-84 314.7 222 65.3
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 7.5e-84 314.3 220 65.5
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 9.8e-84 313.9 223 65.5
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 9.8e-84 313.9 244 60.2
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 9.8e-84 313.9 223 65.5
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 1.3e-83 313.5 223 65.5
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 1.3e-83 313.5 224 64.3
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 1.7e-83 313.2 223 65.0
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 1.7e-83 313.2 222 66.2
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 6.4e-83 311.2 221 65.2
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 6.4e-83 311.2 225 62.7
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 2.4e-82 309.3 222 64.0
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 2.4e-82 309.3 224 65.6
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 3.2e-82 308.9 224 65.6
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 3.2e-82 308.9 223 63.7
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 5.4e-82 308.1 221 64.3
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 7.1e-82 307.8 221 63.8
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 1.2e-81 307.0 225 62.2
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 2.1e-81 306.2 223 62.8
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 2.7e-81 305.8 220 62.7
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 2.7e-81 305.8 221 64.3
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 4.6e-81 305.1 221 64.3
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 1.7e-80 303.1 220 63.2
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.7e-80 303.1 221 63.3
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 3.3e-79 298.9 223 61.9
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 5.6e-79 298.1 230 62.2
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 1.6e-78 296.6 224 64.3
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 4.7e-78 295.0 222 63.1
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 4.0e-77 292.0 221 62.4
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 2.2e-75 286.2 225 60.4
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 1.1e-74 283.9 224 62.1
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.5e-71 273.5 242 57.0
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 4.3e-71 271.9 242 57.0
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 4.3e-71 271.9 225 60.0
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 7.3e-71 271.2 242 57.0
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 2.4e-69 266.2 221 60.6
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 8.9e-69 264.2 234 54.7
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 2.6e-68 262.7 224 57.6
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 1.2e-65 253.8 232 58.2
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 7.8e-65 251.1 175 65.7
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 1.0e-64 250.8 159 68.6
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 1.0e-64 250.8 232 57.8
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 2.3e-64 249.6 170 67.1
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 3.9e-64 248.8 223 52.9
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 7.3e-63 244.6 159 67.9
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 6.2e-62 241.5 141 75.9
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 1.8e-61 240.0 173 65.3
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 5.3e-61 238.4 159 67.3
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 2.2e-59 233.0 158 63.3
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 3.5e-57 225.7 223 50.7
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 1.3e-56 223.8 226 48.2
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 3.0e-56 222.6 222 48.6
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 1.9e-55 219.9 219 52.1
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 8.1e-54 214.5 170 59.4
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 1.4e-53 213.8 218 47.7
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.2e-52 210.7 169 59.2
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 2.0e-52 209.9 169 59.2
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 1.1e-45 187.6 191 49.2
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 9.0e-45 184.5 117 68.4
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 3.4e-44 182.6 117 68.4
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 1.7e-43 180.3 143 58.0
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 1.6e-41 173.7 116 72.4
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 6.7e-40 168.3 108 68.5
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 2.6e-36 156.4 124 59.7
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 3.5e-33 146.0 146 54.8
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 1.5e-31 140.6 139 51.1
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 6.3e-30 135.2 223 37.2
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.7e-27 127.1 106 56.6
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.7e-17 93.2 169 36.1
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 1.8e-16 90.5 113 41.6
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 1.8e-16 90.5 113 41.6
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 2.3e-16 90.1 52 73.1
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 2.3e-16 90.1 52 73.1
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 9.1e-13 78.2 47 74.5
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 4.0e-08 62.8 182 26.9
PSO339G2845 Papaver somniferum HOM05D003180 ORTHO05D003664 6.7e-08 62.0 172 29.1
PSO384G3113 Papaver somniferum HOM05D003180 ORTHO05D003664 1.1e-07 61.2 174 28.7
PSO339G4170 Papaver somniferum HOM05D003180 ORTHO05D003664 1.5e-07 60.8 174 28.7
PSO384G1057 Papaver somniferum HOM05D003180 ORTHO05D003664 1.5e-07 60.8 172 29.1
PSO384G2781 Papaver somniferum HOM05D003180 ORTHO05D003664 1.5e-07 60.8 174 28.7
TAR633G2013 Trochodendron aralioides HOM05D003180 ORTHO05D003664 2.0e-07 60.5 172 29.1
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 4.4e-07 59.3 184 28.8
PSO384G1806 Papaver somniferum HOM05D003180 ORTHO05D003664 5.7e-07 58.9 172 28.5
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 1.3e-06 57.8 194 28.4
PSO339G0869 Papaver somniferum HOM05D003180 ORTHO05D003664 1.3e-06 57.8 172 27.9
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 2.8e-06 56.6 184 28.3


User provided reference genes

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