Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 7.6e-144 513.8 263 100.0
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 1.7e-95 353.2 268 68.7
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 8.5e-95 350.9 269 68.0
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 2.5e-94 349.4 268 67.5
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 4.2e-94 348.6 269 67.7
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 1.2e-93 347.1 269 67.3
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 3.6e-93 345.5 270 65.6
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 6.1e-93 344.7 269 66.9
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 3.0e-92 342.4 269 65.4
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 6.7e-92 341.3 270 65.9
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 2.0e-91 339.7 231 75.3
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 3.3e-91 339.0 246 67.9
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 9.7e-91 337.4 271 65.3
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 9.7e-91 337.4 265 65.7
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 1.3e-90 337.0 272 66.2
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 2.8e-90 335.9 231 71.9
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 6.3e-90 334.7 279 62.0
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 1.1e-89 334.0 274 63.1
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.8e-89 333.2 262 65.3
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 3.1e-89 332.4 264 63.6
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 5.3e-89 331.6 259 67.2
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 7.7e-88 327.8 228 71.9
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 1.0e-87 327.4 231 71.0
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.7e-87 326.6 266 62.4
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.9e-87 325.9 231 70.6
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 3.8e-87 325.5 259 66.0
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 8.5e-87 324.3 236 65.7
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.1e-86 323.9 242 68.6
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 1.5e-86 323.6 265 62.3
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 2.5e-86 322.8 233 69.5
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 5.5e-86 321.6 269 62.5
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 9.4e-86 320.9 242 64.9
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 9.4e-86 320.9 267 64.0
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 1.2e-85 320.5 231 67.5
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 1.2e-85 320.5 236 70.3
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 1.2e-85 320.5 271 63.1
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 3.6e-85 318.9 269 62.5
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 8.0e-85 317.8 244 66.0
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 1.8e-84 316.6 265 60.4
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 1.8e-84 316.6 235 66.4
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 5.2e-84 315.1 236 66.9
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 6.7e-84 314.7 236 66.9
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 1.2e-83 313.9 237 69.2
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 1.5e-83 313.5 239 64.9
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 2.0e-83 313.2 240 65.4
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 1.7e-82 310.1 232 65.5
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.2e-82 309.7 273 60.1
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 6.3e-82 308.1 231 68.0
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 8.2e-82 307.8 232 65.5
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 1.1e-81 307.4 231 68.0
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 5.3e-81 305.1 226 65.9
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 1.0e-79 300.8 240 62.5
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.3e-79 300.4 274 58.8
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 5.0e-79 298.5 240 62.1
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 6.5e-79 298.1 274 58.4
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 1.1e-78 297.4 233 65.2
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 1.9e-78 296.6 276 57.2
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 4.2e-78 295.4 223 64.1
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 5.5e-78 295.0 223 66.4
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 7.2e-78 294.7 240 60.8
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 7.2e-78 294.7 269 56.5
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 9.4e-78 294.3 240 60.4
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 1.2e-77 293.9 240 61.2
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.2e-77 293.9 276 56.5
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 1.2e-77 293.9 240 61.7
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 1.6e-77 293.5 271 56.5
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 2.1e-77 293.1 240 60.8
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 2.7e-77 292.7 240 60.8
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 3.6e-77 292.4 240 60.4
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 8.0e-77 291.2 240 60.4
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.0e-77 291.2 219 67.6
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 3.0e-76 289.3 266 57.1
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 3.0e-76 289.3 266 57.1
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 8.8e-76 287.7 273 57.5
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 1.5e-75 287.0 243 61.3
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 2.6e-75 286.2 273 54.9
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 3.4e-75 285.8 206 69.4
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 1.3e-74 283.9 237 59.1
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 4.8e-74 282.0 270 57.4
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 1.8e-73 280.0 236 59.3
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 3.1e-73 279.3 240 60.4
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 4.1e-73 278.9 231 57.6
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 5.9e-72 275.0 274 58.0
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 3.0e-68 262.7 187 70.1
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 4.0e-68 262.3 198 67.2
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 3.4e-67 259.2 244 54.9
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 5.7e-67 258.5 276 51.8
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 1.3e-66 257.3 198 64.6
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-65 254.2 187 67.9
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 1.8e-65 253.4 262 52.3
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 4.1e-65 252.3 186 67.2
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 1.6e-64 250.4 242 55.4
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.6e-64 250.4 240 55.4
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 5.9e-64 248.4 230 55.2
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 2.3e-63 246.5 215 60.0
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.3e-62 242.7 181 67.4
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 7.3e-62 241.5 216 56.0
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 3.4e-59 232.6 190 60.0
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 7.5e-59 231.5 219 56.2
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.0e-56 223.4 237 51.9
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.3e-54 215.7 191 60.7
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.9e-52 208.0 220 57.3
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 5.4e-49 198.7 160 66.2
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.3e-47 193.4 124 75.0
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 1.8e-44 183.7 122 72.1
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.8e-40 168.3 135 63.0
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 1.1e-38 164.5 169 50.9
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-36 157.9 123 65.9
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.0e-35 153.7 246 42.7
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 2.2e-34 150.2 218 39.0
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 1.7e-31 140.6 108 63.9
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 5.6e-30 135.6 125 56.8
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-28 131.3 103 61.2
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.6e-27 126.7 116 56.9
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.9e-25 120.6 110 58.2
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-25 120.2 97 59.8
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.3e-22 109.4 74 70.3
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.0e-20 102.8 71 74.6
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.9e-20 102.1 121 48.8
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 9.0e-20 101.7 86 54.7
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.6e-19 100.1 99 55.6
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 9.3e-17 91.7 67 68.7
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.5e-16 89.7 88 50.0
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.3e-15 87.0 75 56.0
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 1.5e-14 84.3 82 48.8
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 3.3e-14 83.2 98 43.9
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 1.4e-12 77.8 91 45.1
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.6e-11 73.6 45 73.3
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 2.2e-10 70.5 66 50.0
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.8e-10 69.7 48 66.7
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 8.4e-10 68.6 138 31.9
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.3e-09 65.1 133 32.3
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 8.7e-07 58.5 51 60.8
FvH4_1g23850 Fragaria vesca HOM05D005360 ORTHO05D006501 1.9e-06 57.4 41 65.9
Gohir.A01G109901 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.6e-06 55.8 48 56.2
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 7.4e-06 55.5 44 52.3
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 7.4e-06 55.5 44 52.3


User provided reference genes

Program Settings