Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 3.0e-56 221.5 102 100.0
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 2.6e-52 208.4 99 93.9
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 8.5e-51 203.4 98 92.9
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 4.2e-50 201.1 101 90.1
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 7.2e-50 200.3 97 91.8
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 2.7e-49 198.4 99 91.9
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 2.7e-49 198.4 99 91.9
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 1.5e-47 192.6 103 86.4
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 2.0e-47 192.2 99 87.9
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 2.6e-47 191.8 103 86.4
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 3.3e-47 191.4 102 85.3
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 4.4e-47 191.0 102 83.3
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 9.7e-47 189.9 99 85.9
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 2.2e-46 188.7 103 85.4
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 2.2e-46 188.7 96 88.5
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 2.8e-46 188.3 95 90.5
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 2.8e-46 188.3 95 90.5
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 3.7e-46 188.0 103 83.5
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 8.2e-46 186.8 101 82.2
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 4.1e-45 184.5 103 84.5
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 4.1e-45 184.5 100 86.0
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 5.3e-45 184.1 100 86.0
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 7.0e-45 183.7 99 85.9
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 9.1e-45 183.3 100 84.0
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 1.2e-44 183.0 97 89.7
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 1.2e-44 183.0 97 89.7
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 1.2e-44 183.0 100 83.0
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 1.2e-44 183.0 104 85.6
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 1.6e-44 182.6 99 84.8
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 3.5e-44 181.4 99 84.8
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 3.5e-44 181.4 100 86.0
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 5.9e-44 180.6 103 84.5
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 5.9e-44 180.6 103 84.5
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 7.7e-44 180.3 100 85.0
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 7.7e-44 180.3 100 83.0
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 7.7e-44 180.3 100 83.0
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 7.7e-44 180.3 100 83.0
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 1.0e-43 179.9 100 83.0
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 1.0e-43 179.9 100 84.0
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 1.3e-43 179.5 100 82.0
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 1.3e-43 179.5 100 82.0
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 1.3e-43 179.5 100 82.0
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 1.7e-43 179.1 104 83.7
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 2.2e-43 178.7 100 84.0
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.9e-43 178.3 100 82.0
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 2.9e-43 178.3 99 82.8
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 3.8e-43 177.9 104 83.7
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 3.8e-43 177.9 100 84.0
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.8e-43 177.9 99 81.8
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 3.8e-43 177.9 99 80.8
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 5.0e-43 177.6 97 86.6
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 5.0e-43 177.6 100 82.0
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 5.0e-43 177.6 100 82.0
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 5.0e-43 177.6 103 83.5
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 5.0e-43 177.6 98 81.6
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 6.5e-43 177.2 99 79.8
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 6.5e-43 177.2 100 82.0
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 6.5e-43 177.2 96 86.5
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 8.5e-43 176.8 100 83.0
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 8.5e-43 176.8 99 81.8
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 1.1e-42 176.4 99 82.8
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 1.1e-42 176.4 103 80.6
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 1.1e-42 176.4 100 84.0
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 4.2e-42 174.5 102 78.4
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 5.5e-42 174.1 95 85.3
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 5.5e-42 174.1 97 83.5
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 7.2e-42 173.7 100 78.0
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 9.4e-42 173.3 97 82.5
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 1.2e-41 172.9 99 78.8
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 1.6e-41 172.6 98 83.7
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 1.6e-41 172.6 98 83.7
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 2.1e-41 172.2 100 80.0
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 2.1e-41 172.2 103 74.8
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 2.7e-41 171.8 95 83.2
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 4.7e-41 171.0 96 81.2
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 6.1e-41 170.6 96 80.2
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 1.4e-40 169.5 100 78.0
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.4e-40 169.5 100 79.0
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 2.3e-40 168.7 104 76.9
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 4.0e-40 167.9 100 76.0
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 4.0e-40 167.9 102 73.5
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 5.2e-40 167.5 104 76.9
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 5.2e-40 167.5 104 76.9
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 8.8e-40 166.8 96 80.2
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 8.8e-40 166.8 102 73.5
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 1.5e-39 166.0 99 77.8
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 1.5e-39 166.0 99 77.8
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 2.0e-39 165.6 99 79.8
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 2.0e-39 165.6 103 75.7
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 2.6e-39 165.2 99 76.8
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 3.3e-39 164.9 99 76.8
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 5.7e-39 164.1 104 75.0
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 5.7e-39 164.1 100 75.0
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 7.5e-39 163.7 95 76.8
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 7.5e-39 163.7 99 76.8
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 9.7e-39 163.3 99 75.8
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 9.7e-39 163.3 99 75.8
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 1.3e-38 162.9 99 75.8
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 1.3e-38 162.9 99 75.8
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 1.3e-38 162.9 99 76.8
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 1.3e-38 162.9 100 76.0
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 1.7e-38 162.5 99 75.8
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 1.7e-38 162.5 99 75.8
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 1.7e-38 162.5 99 75.8
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 1.7e-38 162.5 99 75.8
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 2.8e-38 161.8 100 75.0
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 3.7e-38 161.4 99 74.7
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 4.8e-38 161.0 99 74.7
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 4.8e-38 161.0 99 74.7
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 6.3e-38 160.6 99 74.7
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 6.3e-38 160.6 99 74.7
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 6.3e-38 160.6 99 75.8
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 6.3e-38 160.6 99 75.8
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 6.3e-38 160.6 99 75.8
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 6.3e-38 160.6 99 75.8
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 6.3e-38 160.6 99 75.8
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 8.2e-38 160.2 100 71.0
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 1.1e-37 159.8 100 73.0
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 1.4e-37 159.5 99 73.7
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 1.4e-37 159.5 99 73.7
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 1.4e-37 159.5 103 74.8
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.4e-37 159.5 103 74.8
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.4e-37 159.5 103 74.8
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.4e-37 159.5 103 74.8
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.4e-37 159.5 103 74.8
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 1.4e-37 159.5 83 89.2
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 1.8e-37 159.1 99 74.7
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 3.1e-37 158.3 97 75.3
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 1.2e-36 156.4 98 74.5
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 1.2e-36 156.4 97 74.2
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.2e-36 156.4 99 72.7
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.6e-36 156.0 98 76.5
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 4.5e-36 154.5 100 71.0
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.6e-33 146.0 82 75.6
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 1.0e-32 143.3 71 87.3
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.2e-31 139.8 90 70.0
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 1.1e-29 133.3 68 82.4
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 2.8e-25 118.6 74 79.7
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 2.3e-24 115.5 88 58.0
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 4.0e-24 114.8 71 73.2
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 5.2e-24 114.4 85 62.4
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 8.9e-24 113.6 85 62.4
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 1.2e-23 113.2 68 77.9
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 2.6e-23 112.1 74 73.0
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 3.4e-23 111.7 89 60.7
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 4.4e-23 111.3 83 65.1
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 3.1e-21 105.1 66 77.3
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 1.2e-20 103.2 84 54.8
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 1.0e-19 100.1 57 71.9
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 8.0e-17 90.5 100 53.0
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 1.2e-15 86.7 79 44.3
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 2.9e-14 82.0 75 57.3
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 2.7e-12 75.5 50 72.0
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 2.5e-10 68.9 93 38.7
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 1.6e-09 66.2 54 63.0
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 2.3e-08 62.4 47 68.1
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 3.1e-08 62.0 36 80.6
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 4.0e-08 61.6 39 74.4


User provided reference genes

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