Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015089 Daucus carota HOM05D000135 ORTHO05D000816 5.3e-19 98.2 48 100.0
Cc07_g00660 Coffea canephora HOM05D000135 ORTHO05D000816 4.8e-12 75.1 47 72.3
Atru.chr6.2532 Acer truncatum HOM05D000135 ORTHO05D000816 1.8e-11 73.2 48 70.8
Duzib147G0709 Durio zibethinus HOM05D000135 ORTHO05D000816 7.0e-11 71.2 48 68.8
Lj7C609T6 Lonicera japonica HOM05D000135 ORTHO05D000816 9.1e-11 70.9 47 68.1
ECA232G4862 Erigeron canadensis HOM05D000135 ORTHO05D000816 2.0e-10 69.7 48 68.8
Ciclev10018267m.g Citrus clementina HOM05D000135 ORTHO05D000816 2.6e-10 69.3 47 68.1
Gohir.D04G078000 Gossypium hirsutum HOM05D000135 ORTHO05D000816 2.6e-10 69.3 48 68.8
Gorai.012G087800 Gossypium raimondii HOM05D000135 ORTHO05D000816 2.6e-10 69.3 48 68.8
QL02p071822 Quercus lobata HOM05D000135 ORTHO05D000816 3.5e-10 68.9 48 68.8
Oeu035216.1 Olea europaea HOM05D000135 ORTHO05D000816 4.5e-10 68.6 47 66.0
Gohir.A05G339500 Gossypium hirsutum HOM05D000135 ORTHO05D000816 5.9e-10 68.2 48 68.8
Dinv33354 Davidia involucrata HOM05D000135 ORTHO05D000816 7.7e-10 67.8 47 70.2
Oeu035215.1 Olea europaea HOM05D000135 ORTHO05D000816 7.7e-10 67.8 47 66.0
Potri.001G332900 Populus trichocarpa HOM05D000135 ORTHO05D000816 1.0e-09 67.4 48 66.7
Hma1.2p1_1219F.1_g267940 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 1.3e-09 67.0 47 66.0
Prupe.3G303600 Prunus persica HOM05D000135 ORTHO05D000816 1.3e-09 67.0 48 68.8
TWI12G0256 Tripterygium wilfordii HOM05D000135 ORTHO05D000816 1.3e-09 67.0 48 66.7
CiPaw.03G053600 Carya illinoinensis HOM05D000135 ORTHO05D000816 1.7e-09 66.6 49 67.3
Lju41C51T3 Lonicera japonica HOM05D000135 ORTHO05D000816 1.7e-09 66.6 46 67.4
Manes.17G104400 Manihot esculenta HOM05D000135 ORTHO05D000816 1.7e-09 66.6 44 68.2
COL.COLO4_17166 Corchorus olitorius HOM05D000135 ORTHO05D000816 2.9e-09 65.9 48 62.5
RcHm_v2.0_Chr2g0175201 Rosa chinensis HOM05D000135 ORTHO05D000816 2.9e-09 65.9 48 68.8
Lsat_1_v5_gn_4_185301 Lactuca sativa HOM05D000135 ORTHO05D000816 3.8e-09 65.5 48 60.4
Manes.15G159100 Manihot esculenta HOM05D000135 ORTHO05D000816 3.8e-09 65.5 47 63.8
Cfa021347 Carpinus fangiana HOM05D000135 ORTHO05D000816 6.5e-09 64.7 48 62.5
Migut.K01452 Erythranthe guttata HOM05D016915 ORTHO05D000816 6.5e-09 64.7 47 66.0
FvH4_6g53150 Fragaria vesca HOM05D000135 ORTHO05D000816 6.5e-09 64.7 48 68.8
FAN14G0778 Fragaria x ananassa HOM05D000135 ORTHO05D000816 6.5e-09 64.7 48 68.8
SalBow1G7946 Salvia bowleyana HOM05D000135 ORTHO05D000816 6.5e-09 64.7 47 61.7
SalBow7G1515 Salvia bowleyana HOM05D000135 ORTHO05D000816 6.5e-09 64.7 47 61.7
CANSAT64G0052 Cannabis sativa HOM05D000135 ORTHO05D000816 8.5e-09 64.3 48 62.5
Thecc.04G033300 Theobroma cacao HOM05D000135 ORTHO05D000816 8.5e-09 64.3 48 62.5
Haze_14848 Corylus avellana HOM05D000135 ORTHO05D000816 1.1e-08 63.9 49 65.3
Hma1.2p1_1219F.1_g267950 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 1.5e-08 63.5 47 66.0
Hma1.2p1_1219F.1_g267970 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 1.5e-08 63.5 47 63.8
Hma1.2p1_2105F.1_g314145 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 1.5e-08 63.5 47 63.8
Migut.K01451 Erythranthe guttata HOM05D000135 ORTHO05D000816 1.9e-08 63.2 47 61.7
Duzib264G0451 Durio zibethinus HOM05D000135 ORTHO05D000816 2.5e-08 62.8 47 59.6
Duzib264G0910 Durio zibethinus HOM05D000135 ORTHO05D000816 2.5e-08 62.8 47 59.6
Migut.K01450 Erythranthe guttata HOM05D000135 ORTHO05D000816 2.5e-08 62.8 47 63.8
SalBow1G2517 Salvia bowleyana HOM05D016915 ORTHO05D000816 2.5e-08 62.8 47 61.7
SalBow7G4318 Salvia bowleyana HOM05D016915 ORTHO05D000816 2.5e-08 62.8 47 59.6
SalBow7G4752 Salvia bowleyana HOM05D016915 ORTHO05D000816 2.5e-08 62.8 47 61.7
TPR.G39344 Trifolium pratense HOM05D000135 ORTHO05D000816 2.5e-08 62.8 48 62.5
Glyma.19G088200 Glycine max HOM05D000135 ORTHO05D000816 3.2e-08 62.4 47 63.8
Oeu011957.1 Olea europaea HOM05D000135 ORTHO05D000816 3.2e-08 62.4 49 63.3
CSS0033756 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000816 4.2e-08 62.0 44 65.9
SalBow1G3513 Salvia bowleyana HOM05D016915 ORTHO05D000816 4.2e-08 62.0 47 59.6
Glyma.16G059300 Glycine max HOM05D000135 ORTHO05D000816 5.5e-08 61.6 47 61.7
MD17G1014200 Malus domestica HOM05D000135 ORTHO05D000816 5.5e-08 61.6 48 64.6
TAR622G0710 Trochodendron aralioides HOM05D000135 ORTHO05D000816 5.5e-08 61.6 48 62.5
HanXRQChr15g0474941 Helianthus annuus HOM05D000135 ORTHO05D000816 7.2e-08 61.2 46 60.9
Lalb_Chr14g0363211 Lupinus albus HOM05D000135 ORTHO05D000816 7.2e-08 61.2 47 61.7
MD09G1013600 Malus domestica HOM05D000135 ORTHO05D000816 7.2e-08 61.2 48 62.5
Phvul.004G055200 Phaseolus vulgaris HOM05D000135 ORTHO05D000816 7.2e-08 61.2 48 62.5
HanXRQChr15g0486921 Helianthus annuus HOM05D000135 ORTHO05D000816 9.4e-08 60.8 48 56.2
Medtr6g023460 Medicago truncatula HOM05D000135 ORTHO05D000816 9.4e-08 60.8 48 60.4
SGA_v2.0_scaffold47G17571 Striga asiatica HOM05D000135 ORTHO05D000816 9.4e-08 60.8 47 57.4
SGA_v2.0_scaffold47G17572 Striga asiatica HOM05D000135 ORTHO05D000816 9.4e-08 60.8 48 56.2
Cpa.g.sc36.91 Carica papaya HOM05D000135 ORTHO05D000816 1.2e-07 60.5 42 66.7
Peaxi162Scf00700g00017 Petunia axillaris HOM05D000135 ORTHO05D000816 1.2e-07 60.5 47 59.6
Sabra16G0213700 Salix brachista HOM05D000135 ORTHO05D000816 1.2e-07 60.5 48 56.2
Sabra16G0213800 Salix brachista HOM05D000135 ORTHO05D000816 1.2e-07 60.5 48 56.2
Rhsim08G0044100 Rhododendron simsii HOM05D000135 ORTHO05D000816 1.6e-07 60.1 47 59.6
Actinidia05909 Actinidia chinensis HOM05D000135 ORTHO05D000816 2.1e-07 59.7 47 59.6
Lsat_1_v5_gn_9_1180 Lactuca sativa HOM05D000135 ORTHO05D000816 2.1e-07 59.7 46 56.5
VMungo0464G1988 Vigna mungo HOM05D000135 ORTHO05D000816 2.1e-07 59.7 48 60.4
Ca_28119_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000816 2.7e-07 59.3 47 59.6
COL.COLO4_12261 Corchorus olitorius HOM05D000135 ORTHO05D000816 2.7e-07 59.3 43 60.5
FAN02G0421 Fragaria x ananassa HOM05D000135 ORTHO05D000816 2.7e-07 59.3 48 64.6
HanXRQChr09g0256101 Helianthus annuus HOM05D000135 ORTHO05D000816 2.7e-07 59.3 45 57.8
Solyc11g071740.2 Solanum lycopersicum HOM05D000135 ORTHO05D000816 2.7e-07 59.3 42 64.3
Sopen11g029410 Solanum pennellii HOM05D000135 ORTHO05D000816 2.7e-07 59.3 42 64.3
PGSC0003DMG400040538 Solanum tuberosum HOM05D000135 ORTHO05D000816 2.7e-07 59.3 42 64.3
PGSC0003DMG400045603 Solanum tuberosum HOM05D000135 ORTHO05D000816 2.7e-07 59.3 42 64.3
Nitab4.5_0002498g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 3.6e-07 58.9 44 63.6
Oeu058772.1 Olea europaea HOM05D000135 ORTHO05D000816 3.6e-07 58.9 52 57.7
Potri.002G001400 Populus trichocarpa HOM05D000135 ORTHO05D000816 3.6e-07 58.9 47 53.2
Peaxi162Scf00259g00126 Petunia axillaris HOM05D000135 ORTHO05D000816 4.7e-07 58.5 44 61.4
Rhsim10G0007700 Rhododendron simsii HOM05D000135 ORTHO05D000816 4.7e-07 58.5 49 61.2
Rhsim10G0007900 Rhododendron simsii HOM05D000135 ORTHO05D000816 4.7e-07 58.5 49 61.2
TAR622G0218 Trochodendron aralioides HOM05D000135 ORTHO05D000816 4.7e-07 58.5 48 60.4
vmacro05944 Vaccinium macrocarpon HOM05D000135 ORTHO05D000816 4.7e-07 58.5 46 60.9
Atru.chr13.16 Acer truncatum HOM05D000135 ORTHO05D000816 6.1e-07 58.2 43 60.5
Eucgr.J02318 Eucalyptus grandis HOM05D000135 ORTHO05D000816 6.1e-07 58.2 47 57.4
Nitab4.5_0007815g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 6.1e-07 58.2 42 61.9
Sc07g0004160 Simmondsia chinensis HOM05D000135 ORTHO05D000816 6.1e-07 58.2 47 59.6
Nitab4.5_0002498g0070 Nicotiana tabacum HOM05D000135 ORTHO05D000816 8.0e-07 57.8 46 56.5
Peaxi162Scf00259g00018 Petunia axillaris HOM05D000135 ORTHO05D000816 8.0e-07 57.8 46 60.9
Psat1g085520 Pisum sativum HOM05D000135 ORTHO05D000816 8.0e-07 57.8 48 60.4
Psat3g176000 Pisum sativum HOM05D000135 ORTHO05D000816 8.0e-07 57.8 48 62.5
Potri.005G259900 Populus trichocarpa HOM05D000135 ORTHO05D000816 1.0e-06 57.4 44 54.5
QL02p016339 Quercus lobata HOM05D000135 ORTHO05D000816 1.0e-06 57.4 44 59.1
vmacro05943 Vaccinium macrocarpon HOM05D000135 ORTHO05D000816 1.0e-06 57.4 45 60.0
ClCG11G006990 Citrullus lanatus HOM05D000135 ORTHO05D000816 1.4e-06 57.0 47 53.2
Peaxi162Scf00098g00156 Petunia axillaris HOM05D000135 ORTHO05D000816 1.4e-06 57.0 44 59.1
PGSC0003DMG400002994 Solanum tuberosum HOM05D000135 ORTHO05D000816 1.4e-06 57.0 42 57.1
GSVIVG01008516001 Vitis vinifera HOM05D000135 ORTHO05D000816 1.4e-06 57.0 48 56.2
MBI01_g09380_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 1.8e-06 56.6 43 60.5
PGSC0003DMG400005909 Solanum tuberosum HOM05D000135 ORTHO05D000816 1.8e-06 56.6 46 54.3
TAR629G1517 Trochodendron aralioides HOM05D000135 ORTHO05D000816 1.8e-06 56.6 48 58.3
GSVIVG01013467001 Vitis vinifera HOM05D000135 ORTHO05D000816 1.8e-06 56.6 43 60.5
CAN.G1463.22 Capsicum annuum HOM05D000135 ORTHO05D000816 2.3e-06 56.2 42 59.5
MELO3C008204.2 Cucumis melo HOM05D000135 ORTHO05D000816 2.3e-06 56.2 47 51.1
CsaV3_2G034220 Cucumis sativus L. HOM05D000135 ORTHO05D000816 2.3e-06 56.2 47 51.1
Phvul.001G095600 Phaseolus vulgaris HOM05D000135 ORTHO05D000816 2.3e-06 56.2 47 59.6
PGSC0003DMG400002993 Solanum tuberosum HOM05D000135 ORTHO05D000816 2.3e-06 56.2 42 57.1
FvH4_5g26790 Fragaria vesca HOM05D000135 ORTHO05D000816 3.0e-06 55.8 45 57.8
FAN04G2622 Fragaria x ananassa HOM05D000135 ORTHO05D000816 3.0e-06 55.8 45 57.8
FAN08G1719 Fragaria x ananassa HOM05D000135 ORTHO05D000816 3.0e-06 55.8 45 57.8
FAN13G2467 Fragaria x ananassa HOM05D000135 ORTHO05D000816 3.0e-06 55.8 45 57.8
FAN18G1887 Fragaria x ananassa HOM05D000135 ORTHO05D000816 3.0e-06 55.8 45 57.8
MSTRG.3087 Avicennia marina HOM05D000135 ORTHO05D000816 4.0e-06 55.5 47 57.4
Sabra05G0201600 Salix brachista HOM05D000135 ORTHO05D000816 4.0e-06 55.5 44 54.5
Eucgr.B00127 Eucalyptus grandis HOM05D000135 ORTHO05D000816 5.2e-06 55.1 44 56.8
Lj2C97T3 Lonicera japonica HOM05D000135 ORTHO05D000816 5.2e-06 55.1 41 61.0
MBI03_g33916_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 5.2e-06 55.1 42 59.5
Sc09g0007590 Simmondsia chinensis HOM05D000135 ORTHO05D000816 5.2e-06 55.1 44 63.6
Sopen11g029420 Solanum pennellii HOM05D000135 ORTHO05D000816 5.2e-06 55.1 44 54.5
CAN.G742.5 Capsicum annuum HOM05D000135 ORTHO05D000816 6.7e-06 54.7 44 52.3
Nitab4.5_0000875g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000816 6.7e-06 54.7 46 54.3
Nitab4.5_0002183g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000816 6.7e-06 54.7 46 54.3
Prupe.5G000600 Prunus persica HOM05D000135 ORTHO05D000816 6.7e-06 54.7 43 62.8
PGR083G0560 Punica granatum HOM05D000135 ORTHO05D000816 6.7e-06 54.7 43 60.5
QL02p016392 Quercus lobata HOM05D000135 ORTHO05D000816 6.7e-06 54.7 43 58.1
RcHm_v2.0_Chr7g0217701 Rosa chinensis HOM05D000135 ORTHO05D000816 6.7e-06 54.7 45 55.6
Sopen06g030230 Solanum pennellii HOM05D000135 ORTHO05D000816 6.7e-06 54.7 46 52.2
PGSC0003DMG400013427 Solanum tuberosum HOM05D000135 ORTHO05D000816 6.7e-06 54.7 42 66.7
Duzib093G1260 Durio zibethinus HOM05D000135 ORTHO05D000816 8.8e-06 54.3 47 53.2
Migut.F00079 Erythranthe guttata HOM05D016915 ORTHO05D000816 8.8e-06 54.3 41 58.5
Lj2C97T5 Lonicera japonica HOM05D000135 ORTHO05D000816 8.8e-06 54.3 41 61.0
PSO170G5225 Papaver somniferum HOM05D031213 ORTHO05D000816 8.8e-06 54.3 41 63.4
Rhsim10G0007800 Rhododendron simsii HOM05D000135 ORTHO05D000816 8.8e-06 54.3 46 56.5
Solyc06g073830.1 Solanum lycopersicum HOM05D000135 ORTHO05D000816 8.8e-06 54.3 46 52.2
Solyc11g071760.3 Solanum lycopersicum HOM05D000135 ORTHO05D000816 8.8e-06 54.3 42 54.8
Sopen11g029430 Solanum pennellii HOM05D000135 ORTHO05D000816 8.8e-06 54.3 42 54.8


User provided reference genes

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