Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 2.6e-130 468.8 241 100.0
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 3.4e-74 282.3 243 61.7
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.7e-73 280.0 252 61.9
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 2.9e-73 279.3 242 62.4
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.9e-73 279.3 246 62.2
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 6.4e-73 278.1 246 61.8
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.4e-72 276.9 249 61.8
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.4e-72 276.9 246 61.4
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 1.6e-71 273.5 246 61.0
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.1e-71 273.1 249 59.0
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 7.8e-71 271.2 247 61.5
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 7.8e-71 271.2 249 60.6
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 2.3e-70 269.6 245 57.6
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 2.3e-70 269.6 241 60.6
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.0e-70 269.2 244 60.2
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.9e-70 268.9 241 60.2
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 5.1e-70 268.5 243 57.2
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 6.6e-70 268.1 241 60.6
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 8.7e-70 267.7 251 56.2
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 8.7e-70 267.7 241 58.9
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 8.7e-70 267.7 242 60.7
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.9e-69 266.5 244 57.8
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 9.6e-69 264.2 247 57.1
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 9.6e-69 264.2 242 56.2
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 9.6e-69 264.2 245 57.1
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.1e-68 263.1 246 58.9
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 8.1e-68 261.2 245 57.1
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 8.1e-68 261.2 241 57.7
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 8.1e-68 261.2 245 56.7
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.1e-67 260.8 242 56.2
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.1e-67 260.8 192 67.2
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.4e-67 260.4 252 57.5
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.8e-67 260.0 241 57.7
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 1.8e-67 260.0 242 56.6
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.1e-67 259.2 241 56.8
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 3.1e-67 259.2 240 57.9
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 4.0e-67 258.8 249 59.0
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 4.0e-67 258.8 244 58.6
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 4.0e-67 258.8 241 57.3
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 4.0e-67 258.8 251 57.8
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 9.0e-67 257.7 245 55.5
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-66 257.3 207 63.8
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.2e-66 257.3 246 56.9
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.5e-66 256.9 193 65.8
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 2.0e-66 256.5 246 55.3
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 2.0e-66 256.5 246 55.3
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.0e-66 256.5 242 57.9
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.0e-66 256.5 242 59.1
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.0e-66 256.5 242 59.1
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 2.6e-66 256.1 190 66.8
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.6e-66 256.1 245 55.5
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 4.4e-66 255.4 245 56.7
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 7.6e-66 254.6 178 70.2
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 9.9e-66 254.2 178 70.8
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.3e-65 253.8 245 55.5
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.3e-65 253.8 247 56.7
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 1.7e-65 253.4 239 57.3
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.7e-65 253.4 192 66.7
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 1.7e-65 253.4 250 55.6
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.7e-65 253.4 178 70.2
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.9e-65 252.7 178 69.1
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 2.9e-65 252.7 254 55.1
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 3.8e-65 252.3 192 66.1
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 3.8e-65 252.3 192 66.1
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 3.8e-65 252.3 256 55.1
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 6.4e-65 251.5 240 57.1
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 6.4e-65 251.5 178 69.7
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 8.4e-65 251.1 178 68.0
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.4e-64 250.4 178 69.7
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.9e-64 250.0 243 55.6
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.9e-64 250.0 237 54.9
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 2.4e-64 249.6 243 55.6
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 2.4e-64 249.6 243 55.6
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 2.4e-64 249.6 252 54.8
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 2.4e-64 249.6 241 56.4
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 4.2e-64 248.8 243 55.1
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 4.2e-64 248.8 247 54.3
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 9.3e-64 247.7 211 58.3
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 9.3e-64 247.7 211 58.3
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.3e-64 247.7 178 68.5
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.6e-63 246.9 242 55.0
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 2.7e-63 246.1 242 53.7
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 3.5e-63 245.7 255 51.8
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 4.6e-63 245.4 239 56.5
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 7.9e-63 244.6 232 57.3
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 1.0e-62 244.2 239 54.8
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 3.0e-62 242.7 237 52.7
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 3.9e-62 242.3 189 65.1
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 5.1e-62 241.9 254 51.6
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 5.1e-62 241.9 246 53.3
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 6.6e-62 241.5 249 52.2
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 6.6e-62 241.5 255 51.0
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 6.6e-62 241.5 244 54.5
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.1e-61 240.7 186 66.1
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.5e-61 240.4 187 62.0
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.5e-61 240.4 248 53.6
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.9e-61 240.0 246 53.7
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.9e-61 240.0 181 66.9
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 2.5e-61 239.6 240 52.5
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 3.3e-61 239.2 242 53.3
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 4.3e-61 238.8 242 53.3
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 2.1e-60 236.5 254 51.2
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.8e-60 236.1 246 53.3
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 2.8e-60 236.1 239 52.3
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 8.1e-60 234.6 254 52.8
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.1e-59 234.2 182 65.4
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.4e-59 233.8 246 52.8
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.4e-59 233.8 245 53.9
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.1e-59 232.6 255 51.0
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 5.3e-59 231.9 231 55.4
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 6.9e-59 231.5 163 69.9
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 6.9e-59 231.5 188 59.6
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 6.9e-59 231.5 250 51.6
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.5e-58 230.3 176 63.1
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.5e-58 230.3 249 51.8
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 4.5e-58 228.8 199 59.3
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 4.5e-58 228.8 245 52.2
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.3e-57 227.3 151 74.2
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 1.3e-57 227.3 239 53.6
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.7e-57 226.9 234 52.6
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.4e-56 223.8 180 62.8
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.9e-56 223.4 169 64.5
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.2e-56 222.6 147 74.1
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 3.2e-56 222.6 172 63.4
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 5.5e-56 221.9 172 62.8
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.0e-54 217.6 172 61.6
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.8e-54 216.9 223 52.9
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.8e-54 216.9 191 56.5
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.3e-54 216.5 230 52.2
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 2.5e-53 213.0 173 62.4
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.5e-53 213.0 163 65.0
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 7.4e-53 211.5 172 59.3
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 3.7e-52 209.1 249 49.8
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.8e-52 208.8 170 60.0
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.4e-51 207.2 173 60.7
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 2.9e-49 199.5 247 46.2
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.3e-48 194.5 163 62.0
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 6.0e-47 191.8 226 49.1
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 6.7e-46 188.3 166 61.4
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.3e-44 184.1 176 52.8
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-43 180.6 132 64.4
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.3e-40 167.9 147 61.2
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.1e-37 161.0 112 68.8
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.4e-35 153.3 172 47.1
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 2.5e-32 143.3 173 42.2
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 8.8e-30 134.8 180 43.9
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 3.7e-28 129.4 195 37.9
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 6.3e-28 128.6 161 44.7
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 8.2e-28 128.3 110 53.6
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 9.1e-27 124.8 155 40.6
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.1e-23 113.6 76 69.7
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 1.3e-17 94.4 86 59.3
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 1.6e-15 87.4 161 36.0
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 8.0e-15 85.1 87 49.4
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.0e-14 84.7 108 50.0
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 1.6e-07 60.8 78 42.3
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 2.7e-07 60.1 61 47.5
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 2.7e-07 60.1 61 47.5


User provided reference genes

Program Settings