Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 1.8e-207 725.7 363 100.0
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 8.9e-111 404.4 313 64.5
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 8.9e-111 404.4 313 64.9
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 2.0e-110 403.3 313 62.9
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 3.4e-110 402.5 313 64.2
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 1.6e-107 393.7 313 62.6
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 2.1e-107 393.3 315 61.0
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 2.3e-106 389.8 316 62.7
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 3.3e-105 386.0 315 58.7
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 3.3e-105 386.0 313 59.4
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 1.6e-104 383.6 313 62.6
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 2.8e-104 382.9 365 55.6
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 1.1e-103 380.9 313 60.4
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 4.0e-103 379.0 313 61.7
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 4.0e-103 379.0 313 59.4
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 5.2e-103 378.6 315 62.2
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 6.9e-103 378.3 313 62.0
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 1.2e-102 377.5 313 60.1
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 1.2e-102 377.5 313 59.4
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 1.5e-102 377.1 313 60.7
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 3.4e-102 375.9 313 59.7
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 3.4e-102 375.9 315 58.4
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 4.4e-102 375.6 328 58.5
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 9.9e-102 374.4 313 59.4
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 1.7e-101 373.6 313 61.0
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 2.2e-101 373.2 313 59.7
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 2.9e-101 372.9 315 59.7
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 3.8e-101 372.5 313 60.1
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 4.9e-101 372.1 315 59.7
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 4.9e-101 372.1 342 57.6
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 4.9e-101 372.1 342 57.6
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 1.4e-100 370.5 303 61.1
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 3.2e-100 369.4 315 58.7
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 3.2e-100 369.4 315 58.7
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 3.2e-100 369.4 313 59.1
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 3.2e-100 369.4 314 60.2
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 5.4e-100 368.6 315 58.4
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 7.1e-100 368.2 313 60.4
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 1.2e-99 367.5 348 56.0
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 3.5e-99 365.9 313 60.1
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 1.7e-98 363.6 313 57.8
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 3.9e-98 362.5 315 58.1
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 8.7e-98 361.3 316 57.3
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 1.1e-97 360.9 313 59.4
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 7.3e-97 358.2 324 56.5
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.1e-96 356.7 324 56.2
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 2.1e-96 356.7 343 55.1
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 2.1e-96 356.7 313 56.5
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 2.8e-96 356.3 343 54.5
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 1.4e-95 354.0 315 56.5
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 1.8e-95 353.6 313 55.9
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 2.6e-94 349.7 316 55.7
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 5.8e-94 348.6 274 63.1
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 7.6e-94 348.2 325 55.4
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 1.3e-93 347.4 386 49.2
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 3.8e-93 345.9 341 53.4
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 2.4e-92 343.2 314 55.4
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 3.2e-92 342.8 313 57.5
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 4.2e-92 342.4 318 54.4
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 4.2e-92 342.4 312 55.8
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 4.2e-92 342.4 312 55.8
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 1.2e-91 340.9 315 56.2
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.6e-91 340.5 341 52.5
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 1.6e-91 340.5 274 61.3
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 3.5e-91 339.3 312 54.8
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 3.5e-91 339.3 312 54.8
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 4.6e-91 339.0 428 43.9
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 6.0e-91 338.6 314 54.8
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 6.0e-91 338.6 313 53.7
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 3.0e-90 336.3 274 60.2
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 5.1e-90 335.5 318 54.4
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 6.7e-90 335.1 316 54.7
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 1.1e-89 334.3 315 55.9
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 2.5e-89 333.2 316 54.7
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 4.3e-89 332.4 315 54.9
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 4.3e-89 332.4 313 53.7
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 9.6e-89 331.3 318 52.8
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 4.8e-88 328.9 299 57.2
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 1.1e-87 327.8 276 59.1
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 1.4e-87 327.4 285 57.2
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 4.0e-87 325.9 340 50.3
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 4.0e-87 325.9 251 64.1
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 6.9e-87 325.1 319 54.2
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 5.8e-86 322.0 309 54.0
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 1.3e-82 310.8 315 51.4
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 2.3e-82 310.1 306 53.9
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 5.1e-74 282.3 331 53.2
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 1.5e-73 280.8 280 51.4
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 2.5e-73 280.0 270 52.2
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 3.3e-73 279.6 315 48.3
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 5.7e-73 278.9 309 47.6
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 1.6e-72 277.3 305 46.2
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 1.5e-70 270.8 313 47.9
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 7.7e-62 241.9 211 55.9
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 4.2e-60 236.1 261 47.5
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 3.8e-53 213.0 165 64.2
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.1e-52 211.5 179 58.7
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 1.2e-46 191.4 271 42.4
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 4.5e-46 189.5 182 51.6
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 2.7e-43 180.3 308 36.0
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 4.4e-41 172.9 151 56.3
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 5.7e-41 172.6 137 62.8
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 2.7e-38 163.7 147 55.1
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 2.2e-37 160.6 131 63.4
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 2.9e-37 160.2 309 34.0
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 1.2e-35 154.8 115 65.2
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 1.6e-35 154.5 154 53.2
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 3.0e-34 150.2 149 53.0
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.1e-28 131.7 109 58.7
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 6.3e-24 115.9 82 65.9
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.4e-23 114.0 91 60.4
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 8.9e-18 95.5 308 27.9
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 8.6e-13 79.0 153 30.7
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 2.0e-09 67.8 42 66.7


User provided reference genes

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