Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 1.5e-305 1052.0 522 100.0
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 2.5e-239 832.0 517 81.4
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 3.9e-232 808.1 515 78.4
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 3.1e-229 798.5 514 77.0
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 6.2e-222 774.2 516 74.8
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 1.3e-219 766.5 514 74.1
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 3.7e-219 765.0 514 74.7
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 2.1e-217 759.2 513 73.9
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 3.5e-217 758.4 513 73.1
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 7.8e-217 757.3 514 73.3
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 3.0e-216 755.4 514 72.8
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 6.6e-216 754.2 514 73.2
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.5e-215 753.1 513 72.3
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 1.6e-214 749.6 514 73.3
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.1e-214 749.2 553 68.7
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 8.1e-214 747.3 513 74.1
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 8.1e-214 747.3 514 73.9
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.1e-213 746.9 514 73.0
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 5.2e-213 744.6 516 71.3
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 1.5e-212 743.0 513 73.9
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.5e-212 743.0 514 73.0
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 2.0e-212 742.7 513 73.1
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 2.6e-212 742.3 513 72.5
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 5.8e-212 741.1 515 72.0
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 7.6e-212 740.7 519 71.9
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 9.9e-212 740.3 514 72.0
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 9.9e-212 740.3 515 71.8
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 1.3e-211 740.0 514 71.8
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 1.3e-211 740.0 513 71.9
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 1.3e-211 740.0 522 70.3
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 1.7e-211 739.6 514 71.8
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 1.7e-211 739.6 515 72.8
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 4.9e-211 738.0 514 71.4
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 6.4e-211 737.6 513 71.5
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 8.4e-211 737.3 515 71.8
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 8.4e-211 737.3 520 71.9
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 1.4e-210 736.5 515 71.8
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 1.4e-210 736.5 515 71.8
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 2.4e-210 735.7 516 72.1
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 2.4e-210 735.7 513 71.3
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 3.2e-210 735.3 514 71.6
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 4.1e-210 734.9 517 72.7
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 9.2e-210 733.8 514 70.8
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 9.2e-210 733.8 522 69.9
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.6e-209 733.0 510 72.2
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 2.1e-209 732.6 514 71.2
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 2.1e-209 732.6 514 72.0
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 2.7e-209 732.3 514 71.2
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 2.7e-209 732.3 515 70.5
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 2.7e-209 732.3 514 71.0
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 3.5e-209 731.9 514 72.0
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 6.0e-209 731.1 517 70.8
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 6.0e-209 731.1 522 70.9
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 6.0e-209 731.1 515 72.4
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 7.8e-209 730.7 514 72.0
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.0e-208 730.3 504 73.8
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 1.7e-208 729.6 513 71.9
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 2.3e-208 729.2 515 72.2
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 3.9e-208 728.4 513 70.6
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.9e-208 728.4 515 71.1
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 5.1e-208 728.0 515 70.1
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 6.6e-208 727.6 514 71.0
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 6.6e-208 727.6 488 77.0
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 1.1e-207 726.9 512 72.7
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.5e-207 726.5 514 71.8
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.9e-207 726.1 510 72.2
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.9e-207 726.1 517 70.4
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.3e-207 724.9 510 72.4
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 7.3e-207 724.2 514 71.0
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 3.6e-206 721.8 515 70.3
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 4.7e-206 721.5 552 67.0
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 4.7e-206 721.5 513 70.8
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.8e-205 719.5 514 71.0
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 2.4e-205 719.2 514 70.4
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 6.9e-205 717.6 529 68.8
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 1.5e-204 716.5 552 66.7
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 2.0e-204 716.1 512 70.9
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 2.0e-204 716.1 514 70.6
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 4.4e-204 714.9 461 78.5
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 9.9e-204 713.8 606 62.4
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.3e-203 713.4 481 72.6
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 2.2e-203 712.6 522 67.8
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 2.9e-203 712.2 514 70.2
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 4.9e-203 711.4 515 70.3
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 4.2e-202 708.4 519 69.2
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 4.2e-202 708.4 522 69.7
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 9.3e-202 707.2 513 68.8
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.0e-200 703.7 501 70.9
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 1.3e-200 703.4 514 66.3
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 2.5e-199 699.1 515 68.0
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.2e-196 690.3 514 68.3
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 3.4e-196 688.7 522 67.0
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 4.5e-196 688.3 516 66.9
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 5.8e-196 688.0 516 68.6
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 8.4e-195 684.1 482 71.4
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 1.1e-194 683.7 527 65.8
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.1e-194 683.7 514 67.7
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 4.2e-194 681.8 512 67.8
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 3.0e-192 675.6 514 66.0
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 3.9e-192 675.2 480 70.2
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 6.7e-192 674.5 572 62.4
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.1e-189 665.6 513 67.8
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 3.1e-189 665.6 464 71.8
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 2.0e-188 662.9 510 66.7
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.0e-188 662.9 513 67.6
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 2.6e-188 662.5 526 66.5
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 4.5e-188 661.8 509 65.6
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 2.9e-187 659.1 588 58.5
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.1e-186 657.1 514 66.0
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.4e-186 656.8 516 64.9
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.4e-186 656.8 514 66.0
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 7.1e-186 654.4 515 65.6
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 9.3e-186 654.1 513 63.9
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 1.6e-185 653.3 469 69.9
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 5.1e-184 648.3 522 65.9
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 5.1e-184 648.3 519 64.0
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 2.5e-183 646.0 463 68.9
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 9.6e-183 644.0 540 63.1
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 1.3e-182 643.7 459 70.6
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 4.8e-182 641.7 514 62.1
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.1e-178 630.6 529 63.3
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 2.6e-172 609.4 511 61.4
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 9.1e-165 584.3 404 72.5
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.0e-163 580.9 405 71.9
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 2.0e-151 540.0 545 52.7
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 2.4e-149 533.1 539 53.8
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 3.5e-148 529.3 487 58.5
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 7.2e-146 521.5 545 52.7
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 2.7e-140 503.1 427 61.1
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 2.1e-137 493.4 464 57.8
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 2.3e-128 463.4 473 54.5
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 1.2e-124 451.1 339 66.1
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 7.0e-117 425.2 281 74.7
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.1e-113 413.7 282 74.8
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 1.3e-110 404.4 289 72.7
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.7e-86 324.3 253 68.4
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 1.3e-83 314.7 261 62.1
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.0e-83 313.5 205 72.2
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 8.4e-78 295.4 254 62.2
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 1.0e-75 288.5 211 70.1
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 5.1e-75 286.2 519 38.5
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 4.3e-66 256.5 577 31.7
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.1e-52 211.1 399 34.8
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 7.9e-44 182.6 136 67.6
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.9e-38 164.1 190 49.5
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 2.1e-36 157.9 109 72.5
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.9e-35 153.7 123 67.5
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.6e-31 141.7 194 40.2
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 5.9e-31 139.8 107 62.6
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.1e-28 131.3 257 36.6
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.1e-28 129.8 257 36.2
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 1.8e-27 128.3 68 85.3
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.4e-24 117.9 63 88.9
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 3.7e-17 94.0 73 65.8
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 5.4e-16 90.1 178 28.7
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 7.2e-13 79.7 113 45.1
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 5.7e-10 70.1 86 46.5
PRCOL_00005868 Prasinoderma coloniale HOM05D000740 ORTHO05D007141 1.3e-09 68.9 121 34.7
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 2.2e-09 68.2 61 60.7
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 4.9e-09 67.0 118 33.9
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.1e-08 63.9 36 80.6
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 5.4e-08 63.5 147 32.0
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 1.6e-07 62.0 37 73.0


User provided reference genes

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