Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 5.9e-124 447.6 232 100.0
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.9e-74 283.1 202 75.2
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.7e-70 268.9 205 73.7
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.7e-70 268.9 205 73.7
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.4e-69 266.2 205 69.3
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 1.0e-67 260.8 208 68.8
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 1.1e-66 257.3 218 67.0
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.9e-66 256.5 202 67.3
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 3.3e-66 255.8 207 66.2
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 3.6e-65 252.3 205 65.9
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 8.1e-65 251.1 205 67.8
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.4e-64 250.4 212 67.0
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 3.1e-64 249.2 208 64.4
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 5.2e-64 248.4 206 67.0
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 1.2e-63 247.3 207 68.1
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-63 246.9 212 65.1
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-63 246.9 209 64.6
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 2.6e-63 246.1 217 67.3
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 3.4e-63 245.7 212 64.6
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.4e-63 245.7 212 64.6
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.4e-63 245.7 208 64.9
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.4e-63 245.4 208 64.9
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 9.9e-63 244.2 215 64.7
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 2.9e-62 242.7 208 63.5
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 2.9e-62 242.7 210 65.7
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 4.9e-62 241.9 213 63.4
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 8.4e-62 241.1 203 66.5
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 1.1e-61 240.7 205 65.4
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.4e-61 240.4 211 63.0
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.4e-61 239.6 206 63.6
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 7.1e-61 238.0 216 65.7
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 7.1e-61 238.0 203 62.1
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.2e-60 237.3 203 62.1
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 1.6e-60 236.9 216 63.4
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 2.1e-60 236.5 210 63.3
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.7e-60 236.1 217 59.4
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.6e-60 235.3 204 62.7
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 4.6e-60 235.3 204 62.7
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 7.8e-60 234.6 208 63.0
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 2.3e-59 233.0 230 58.7
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 2.3e-59 233.0 208 64.4
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 8.7e-59 231.1 204 62.3
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.1e-58 230.7 207 66.2
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 1.1e-58 230.7 197 64.0
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-58 230.3 199 64.8
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 1.9e-58 229.9 217 62.2
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 2.5e-58 229.6 218 61.5
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.5e-58 229.6 206 58.3
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.2e-57 227.3 211 60.2
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.2e-57 227.3 211 59.2
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 2.1e-57 226.5 221 62.9
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 2.8e-57 226.1 214 58.9
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 3.6e-57 225.7 202 61.9
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 4.7e-57 225.3 221 62.4
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 4.7e-57 225.3 208 58.2
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 6.2e-57 224.9 209 59.8
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 8.1e-57 224.6 217 58.1
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.4e-56 223.8 210 57.1
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.4e-56 223.8 222 61.3
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 2.4e-56 223.0 212 57.5
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 3.1e-56 222.6 206 64.6
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 4.0e-56 222.2 209 57.4
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 4.0e-56 222.2 203 57.1
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 4.0e-56 222.2 215 60.9
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 5.2e-56 221.9 196 59.7
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 5.2e-56 221.9 205 61.5
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 5.2e-56 221.9 201 62.2
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 6.9e-56 221.5 195 60.0
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 1.5e-55 220.3 210 59.0
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 2.6e-55 219.5 203 57.6
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 3.4e-55 219.2 245 53.5
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 4.4e-55 218.8 217 57.6
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 4.4e-55 218.8 208 58.2
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 4.4e-55 218.8 203 57.6
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 1.3e-54 217.2 196 58.7
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.7e-54 216.9 213 56.8
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 1.7e-54 216.9 210 55.7
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 1.7e-54 216.9 212 60.8
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.2e-54 216.5 227 55.9
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 3.8e-54 215.7 195 59.5
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 4.9e-54 215.3 207 57.0
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 4.9e-54 215.3 220 60.0
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 8.4e-54 214.5 217 58.1
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 1.9e-53 213.4 197 58.4
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.9e-53 213.4 216 57.4
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 4.2e-53 212.2 204 55.4
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.4e-53 211.8 184 67.4
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 9.3e-53 211.1 212 54.2
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 1.6e-52 210.3 206 54.4
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.1e-52 209.9 202 54.5
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 4.6e-52 208.8 206 55.8
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 4.6e-52 208.8 206 55.8
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 3.0e-51 206.1 210 59.0
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 3.9e-51 205.7 208 61.5
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.5e-50 203.8 204 55.9
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.5e-50 203.8 202 55.4
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 4.3e-50 202.2 156 68.6
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 5.6e-50 201.8 204 57.4
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 5.6e-50 201.8 202 55.9
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 9.6e-50 201.1 202 56.4
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 2.1e-49 199.9 239 54.4
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 2.8e-49 199.5 222 52.3
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 1.1e-48 197.6 216 51.4
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 9.0e-48 194.5 200 59.5
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.4e-47 192.6 158 68.4
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 9.9e-47 191.0 232 49.6
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.7e-46 190.3 205 52.7
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 4.9e-46 188.7 202 55.4
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 1.9e-45 186.8 208 49.0
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 2.4e-45 186.4 208 52.4
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 1.2e-44 184.1 152 67.1
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 2.1e-44 183.3 213 50.7
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 3.9e-43 179.1 204 52.9
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.1e-42 177.6 210 50.5
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 3.7e-41 172.6 190 51.6
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.0e-39 166.8 134 64.2
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 4.5e-39 165.6 192 50.5
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 1.3e-38 164.1 142 66.9
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 6.7e-35 151.8 169 52.1
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.1e-34 151.0 179 49.7
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 1.5e-34 150.6 219 46.1
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 4.3e-34 149.1 201 46.3
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 7.4e-34 148.3 144 56.2
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 8.2e-33 144.8 203 42.9
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 3.1e-32 142.9 158 45.6
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.5e-31 140.6 207 41.1
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.6e-31 139.8 212 44.8
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 5.8e-31 138.7 117 62.4
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 7.6e-31 138.3 119 58.0
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 7.6e-31 138.3 198 44.4
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 7.6e-31 138.3 215 39.5
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 1.3e-30 137.5 212 39.2
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 9.3e-29 131.3 115 52.2
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 7.9e-28 128.3 203 37.9
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 3.9e-27 125.9 104 55.8
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.4e-24 117.5 190 43.7
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 2.4e-24 116.7 102 59.8
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.1e-24 115.9 126 55.6
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 9.0e-24 114.8 97 52.6
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.4e-23 112.8 126 54.8
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.3e-22 110.9 82 56.1
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 8.5e-22 108.2 207 34.8
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.9e-21 107.1 137 41.6
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 5.5e-21 105.5 88 50.0
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 1.6e-20 104.0 110 44.5
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 1.0e-19 101.3 112 51.8
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.5e-18 96.7 93 44.1
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 7.4e-18 95.1 84 46.4
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 2.8e-17 93.2 109 53.2
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 6.3e-17 92.0 98 50.0
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 8.2e-17 91.7 192 39.6
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.8e-16 90.5 87 44.8
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 8.5e-14 81.6 172 38.4
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 1.6e-12 77.4 98 50.0
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.1e-10 71.2 113 38.9
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 7.4e-10 68.6 79 50.6
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 7.4e-10 68.6 70 55.7
Ah.00g000610 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.7e-06 57.4 76 48.7
CiPaw.05G236000 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.7e-06 57.4 74 45.9


User provided reference genes

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