Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014776 Daucus carota HOM05D004393 ORTHO05D004897 0.0e+00 2352.8 1304 100.0
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 4.5e-96 357.5 411 50.9
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 2.2e-95 355.1 407 51.1
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 1.1e-94 352.8 387 54.3
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 9.4e-94 349.7 614 39.9
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 2.1e-93 348.6 389 54.2
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 3.6e-93 347.8 389 52.2
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 2.3e-92 345.1 409 49.9
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 1.5e-91 342.4 409 47.9
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.5e-91 342.4 611 40.1
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 9.7e-91 339.7 415 48.0
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 2.2e-90 338.6 388 51.5
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 4.8e-90 337.4 416 49.3
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 6.3e-90 337.0 454 46.9
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 2.4e-89 335.1 414 49.3
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 5.9e-88 330.5 414 47.1
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 7.7e-88 330.1 417 46.5
Cfa018204 Carpinus fangiana HOM05D004393 ORTHO05D004897 1.3e-87 329.3 667 37.6
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 3.8e-87 327.8 653 37.2
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 5.0e-87 327.4 515 42.1
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 6.5e-87 327.0 409 49.1
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 7.2e-86 323.6 413 47.9
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 1.2e-85 322.8 485 43.9
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 2.1e-85 322.0 382 49.0
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 2.7e-85 321.6 395 49.1
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 4.7e-85 320.9 395 48.9
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 8.0e-85 320.1 432 46.5
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 1.0e-84 319.7 382 47.9
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 1.0e-84 319.7 391 49.4
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 4.0e-84 317.8 390 49.7
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 5.2e-84 317.4 433 45.5
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 6.7e-84 317.0 382 48.4
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 6.7e-84 317.0 400 50.0
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 2.6e-83 315.1 391 50.1
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 2.6e-83 315.1 396 47.0
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 2.6e-83 315.1 409 46.9
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 7.5e-83 313.5 393 49.6
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 6.3e-82 310.5 542 38.9
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 1.1e-81 309.7 415 47.5
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 1.1e-81 309.7 426 44.8
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.6e-80 305.8 612 37.7
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 4.5e-80 304.3 397 48.4
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 7.7e-80 303.5 455 43.3
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 1.0e-79 303.1 419 45.1
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 1.3e-79 302.8 502 40.6
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 1.1e-78 299.7 431 44.8
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 2.5e-78 298.5 424 46.7
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 4.2e-78 297.7 392 48.0
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.2e-77 296.2 402 45.0
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 2.1e-77 295.4 411 46.0
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 3.6e-77 294.7 407 47.7
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 3.6e-77 294.7 578 38.6
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 1.8e-76 292.4 1030 30.8
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 8.8e-76 290.0 414 44.9
PGSC0003DMG402026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 1.2e-75 289.7 577 38.0
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 2.6e-75 288.5 414 42.8
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 4.4e-75 287.7 382 45.8
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 4.4e-75 287.7 414 45.4
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 7.5e-75 287.0 540 39.4
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 9.8e-75 286.6 607 35.3
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 1.3e-74 286.2 408 46.8
Lj7C297T5 Lonicera japonica HOM05D004393 ORTHO05D004897 1.7e-74 285.8 303 54.8
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 3.1e-73 281.6 607 34.9
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 4.1e-73 281.2 394 44.9
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 5.9e-72 277.3 401 43.1
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 1.0e-71 276.6 645 33.5
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 6.5e-71 273.9 589 36.2
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.9e-70 272.3 588 35.2
PGSC0003DMG400009216 Solanum tuberosum HOM05D004393 ORTHO05D004897 1.9e-70 272.3 294 52.7
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 4.2e-70 271.2 462 39.2
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 9.4e-70 270.0 337 47.2
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 1.2e-69 269.6 397 43.3
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 4.7e-69 267.7 684 33.8
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 1.4e-68 266.2 448 40.6
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 1.8e-68 265.8 726 34.2
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 1.4e-65 256.1 413 43.3
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 3.1e-65 255.0 541 36.6
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 4.1e-65 254.6 412 43.2
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 4.1e-65 254.6 472 39.0
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 7.0e-65 253.8 318 49.1
CARHR033810 Cardamine hirsuta HOM05D004393 ORTHO05D004897 4.5e-64 251.1 387 41.9
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 7.7e-64 250.4 465 37.8
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 7.7e-64 250.4 289 50.2
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 3.8e-63 248.1 389 39.6
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 6.6e-63 247.3 278 50.0
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 5.6e-62 244.2 395 41.0
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 1.2e-61 243.0 398 40.5
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 2.8e-61 241.9 371 43.1
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 2.8e-61 241.9 553 36.0
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 2.8e-61 241.9 354 45.5
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 1.4e-60 239.6 400 41.5
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 1.8e-60 239.2 1443 23.4
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 6.8e-60 237.3 400 41.2
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 6.8e-60 237.3 326 42.3
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 2.0e-59 235.7 531 35.8
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 2.6e-59 235.3 394 41.4
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 3.4e-59 235.0 646 31.4
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 7.5e-59 233.8 391 39.9
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 9.8e-59 233.4 400 40.0
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 1.3e-58 233.0 391 39.6
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 1.7e-58 232.6 391 39.1
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 5.4e-57 227.6 391 39.1
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 5.4e-57 227.6 391 39.1
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 7.8e-56 223.8 398 38.7
CDE04G2403 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 1.5e-54 219.5 532 35.2
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 1.9e-54 219.2 484 35.1
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 4.3e-54 218.0 338 42.0
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 7.3e-54 217.2 404 36.9
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 2.8e-53 215.3 576 33.9
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 3.6e-53 214.9 449 35.9
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 4.0e-52 211.5 297 41.1
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 2.0e-51 209.1 489 33.7
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 7.5e-51 207.2 292 43.5
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 4.9e-50 204.5 274 44.5
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 7.8e-48 197.2 336 38.7
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 5.0e-47 194.5 257 44.0
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 6.6e-47 194.1 404 35.9
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 5.2e-44 184.5 315 39.4
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 6.8e-44 184.1 315 39.4
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 1.5e-43 183.0 268 42.9
BcaB04g17878 Brassica carinata HOM05D004393 ORTHO05D004897 5.8e-43 181.0 355 37.5
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 2.9e-42 178.7 258 41.5
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 8.3e-42 177.2 262 40.5
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 8.3e-42 177.2 262 40.5
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 2.1e-40 172.6 1396 23.5
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 3.5e-40 171.8 234 42.7
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 5.1e-39 167.9 213 44.1
TAR624G0853 Trochodendron aralioides HOM05D004393 ORTHO05D004897 6.6e-39 167.5 158 55.1
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 2.5e-38 165.6 386 32.1
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 5.6e-38 164.5 473 32.8
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 2.3e-31 142.5 366 31.7
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 1.9e-30 139.4 288 34.0
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 1.6e-29 136.3 195 41.0
Pp3c27_1110 Physcomitrium patens HOM05D004393 ORTHO05D004897 1.4e-28 133.3 238 37.8
AUR62012506 Chenopodium quinoa HOM05D004393 ORTHO05D004897 2.4e-28 132.5 270 35.9
Pp3c16_5970 Physcomitrium patens HOM05D043451 ORTHO05D004897 1.2e-27 130.2 279 38.0
Glyma.20G176566 Glycine max HOM05D004393 ORTHO05D004897 5.8e-27 127.9 275 36.0
Lalb_Chr24g0401061 Lupinus albus HOM05D004393 ORTHO05D004897 5.8e-27 127.9 209 39.2
Pp3c5_9820 Physcomitrium patens HOM05D004393 ORTHO05D004897 9.9e-27 127.1 270 33.3
Lj7A297T46 Lonicera japonica HOM05D004393 ORTHO05D004897 3.8e-26 125.2 168 45.2
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 1.7e-23 116.3 189 39.7
Dinv01093 Davidia involucrata HOM05D004393 ORTHO05D004897 4.3e-22 111.7 163 42.3
EL10Ac1g00069 Beta vulgaris HOM05D004393 ORTHO05D004897 5.6e-22 111.3 150 44.0
Peaxi162Scf00207g01617 Petunia axillaris HOM05D004393 ORTHO05D004897 9.0e-20 104.0 160 38.8
CDE12G0855 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 1.4e-17 96.7 120 46.7
TAR624G0562 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.9e-17 96.3 302 32.1
Peaxi162Scf00207g01618 Petunia axillaris HOM05D004393 ORTHO05D004897 1.2e-16 93.6 159 42.8
PGSC0003DMG401026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 4.6e-16 91.7 69 53.6
Lalb_Chr24g0401081 Lupinus albus HOM05D004393 ORTHO05D004897 1.3e-13 83.6 84 50.0
Sabra07G0062600 Salix brachista HOM05D004393 ORTHO05D004897 2.4e-12 79.3 81 44.4
PGR044G2736 Punica granatum HOM05D000582 ORTHO05D000456 9.9e-11 73.9 100 37.0
Eucgr.F02629 Eucalyptus grandis HOM05D004393 ORTHO05D004897 1.2e-08 67.0 126 39.7
Actinidia32880 Actinidia chinensis HOM05D004393 ORTHO05D004897 2.3e-07 62.8 139 39.6


User provided reference genes

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